FFCP PHASE1:Mm9::chr5:116995859..116995889,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=408|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:116995859..116995889,-|id=chr5:116995859..116995889,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.26e-22!63;UBERON:0003056!1.26e-20!49;UBERON:0002346!1.20e-18!71;UBERON:0003075!1.20e-18!71;UBERON:0007284!1.20e-18!71;UBERON:0000955!3.45e-16!50;UBERON:0006238!3.45e-16!50;UBERON:0004121!1.34e-15!102;UBERON:0000924!1.34e-15!102;UBERON:0006601!1.34e-15!102;UBERON:0002616!3.01e-15!49;UBERON:0001017!7.58e-15!73;UBERON:0005743!7.58e-15!73;UBERON:0000073!3.40e-14!75;UBERON:0001016!3.40e-14!75;UBERON:0003080!6.31e-14!40;UBERON:0007811!1.67e-13!86;UBERON:0002780!3.63e-13!39;UBERON:0001890!3.63e-13!39;UBERON:0006240!3.63e-13!39;UBERON:0001049!1.10e-12!52;UBERON:0005068!1.10e-12!52;UBERON:0006241!1.10e-12!52;UBERON:0007135!1.10e-12!52;UBERON:0000153!1.66e-11!94;UBERON:0002791!1.76e-11!29;UBERON:0003528!1.76e-11!29;UBERON:0001893!1.76e-11!29;UBERON:0002021!4.54e-10!10;UBERON:0000411!4.54e-10!10;UBERON:0001950!4.54e-10!10;UBERON:0000956!1.04e-09!21;UBERON:0001869!1.04e-09!21;UBERON:0000203!1.04e-09!21;UBERON:0002020!4.29e-09!34;UBERON:0000970!3.06e-08!9;UBERON:0000019!3.06e-08!9;UBERON:0000047!3.06e-08!9;UBERON:0004088!3.06e-08!9;UBERON:0002104!3.06e-08!9;UBERON:0001456!3.06e-08!9;UBERON:0003072!3.06e-08!9;UBERON:0003071!3.06e-08!9;UBERON:0004128!3.06e-08!9;UBERON:0002619!8.29e-08!17;UBERON:0000020!2.81e-07!12;UBERON:0001032!2.81e-07!12;UBERON:0004456!2.81e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0002021,3.00e-22,10;UBERON:0000411,3.00e-22,10;UBERON:0001950,3.00e-22,10;UBERON:0000970,7.89e-16,9;UBERON:0000019,7.89e-16,9;UBERON:0000047,7.89e-16,9;UBERON:0010312,7.89e-16,9;UBERON:0004088,7.89e-16,9;UBERON:0002104,7.89e-16,9;UBERON:0001456,7.89e-16,9;UBERON:0003072,7.89e-16,9;UBERON:0004128,7.89e-16,9;UBERON:0003071,7.89e-16,9;UBERON:0003056,4.22e-14,49;UBERON:0002346,2.86e-13,64;UBERON:0003075,2.86e-13,64;UBERON:0007284,2.86e-13,64;UBERON:0002619,3.67e-13,17;UBERON:0001444,5.03e-13,11;UBERON:0000020,5.70e-12,12;UBERON:0001032,5.70e-12,12;UBERON:0004456,5.70e-12,12;UBERON:0010371,1.42e-11,73;UBERON:0000033,4.46e-11,13;UBERON:0005085,4.46e-11,13;UBERON:0000956,1.12e-10,21;UBERON:0001869,1.12e-10,21;UBERON:0000203,1.12e-10,21;UBERON:0010314,4.56e-09,92;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0003528,9.59e-08,29;UBERON:0002791,9.59e-08,29;UBERON:0001893,9.59e-08,29|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0,0,0.122490799214954,0,0,0,0.255374676170375,0,0,0.274462930807229,0,0,0.56276261003168,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0.878342391034642,0.209446706813455,0,0,0,0,0.149790639404823,0.915001205637253,0.376963056338593,0.173824320192276,0.511430914660661,0,0.162241263067758,0,0,0,0.210441855886474,0.260240885925407,0,0,1.05493372485001,1.08858398642125,3.20284300712124,0.843315521037559,1.03481348295606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514523061896422,0,0,0,0.232236671860439,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35163505977661,0,0,0,1.17131623288992,0.215423397732799,0,0,0.283076530788832,0,0.876767573733936,0.395287777946524,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0,0.129358683782755,0,0.177340233642274,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25900737046827,0.460325236507177,1.71868654031819,0.515559547031063,0,1.5107877947794,0,1.80128481289688,0.453142408984205,1.03552062350364,0.103787347584177,0,0,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0,0,0.463537303779422,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0.365855945745545,0.263069711437843,0.407412341537585,0.561142271657738,0,0.197008964751127,0,0.464810523557898,0,0,0,0,0.191288332068843,0,0|short_description=p@chr5:116995859..116995889,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=408 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:116995859..116995889,- | |||
|id=chr5:116995859..116995889,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.26e-22!63;UBERON:0003056!1.26e-20!49;UBERON:0002346!1.20e-18!71;UBERON:0003075!1.20e-18!71;UBERON:0007284!1.20e-18!71;UBERON:0000955!3.45e-16!50;UBERON:0006238!3.45e-16!50;UBERON:0004121!1.34e-15!102;UBERON:0000924!1.34e-15!102;UBERON:0006601!1.34e-15!102;UBERON:0002616!3.01e-15!49;UBERON:0001017!7.58e-15!73;UBERON:0005743!7.58e-15!73;UBERON:0000073!3.40e-14!75;UBERON:0001016!3.40e-14!75;UBERON:0003080!6.31e-14!40;UBERON:0007811!1.67e-13!86;UBERON:0002780!3.63e-13!39;UBERON:0001890!3.63e-13!39;UBERON:0006240!3.63e-13!39;UBERON:0001049!1.10e-12!52;UBERON:0005068!1.10e-12!52;UBERON:0006241!1.10e-12!52;UBERON:0007135!1.10e-12!52;UBERON:0000153!1.66e-11!94;UBERON:0002791!1.76e-11!29;UBERON:0003528!1.76e-11!29;UBERON:0001893!1.76e-11!29;UBERON:0002021!4.54e-10!10;UBERON:0000411!4.54e-10!10;UBERON:0001950!4.54e-10!10;UBERON:0000956!1.04e-09!21;UBERON:0001869!1.04e-09!21;UBERON:0000203!1.04e-09!21;UBERON:0002020!4.29e-09!34;UBERON:0000970!3.06e-08!9;UBERON:0000019!3.06e-08!9;UBERON:0000047!3.06e-08!9;UBERON:0004088!3.06e-08!9;UBERON:0002104!3.06e-08!9;UBERON:0001456!3.06e-08!9;UBERON:0003072!3.06e-08!9;UBERON:0003071!3.06e-08!9;UBERON:0004128!3.06e-08!9;UBERON:0002619!8.29e-08!17;UBERON:0000020!2.81e-07!12;UBERON:0001032!2.81e-07!12;UBERON:0004456!2.81e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,3.00e-22,10;UBERON:0000411,3.00e-22,10;UBERON:0001950,3.00e-22,10;UBERON:0000970,7.89e-16,9;UBERON:0000019,7.89e-16,9;UBERON:0000047,7.89e-16,9;UBERON:0010312,7.89e-16,9;UBERON:0004088,7.89e-16,9;UBERON:0002104,7.89e-16,9;UBERON:0001456,7.89e-16,9;UBERON:0003072,7.89e-16,9;UBERON:0004128,7.89e-16,9;UBERON:0003071,7.89e-16,9;UBERON:0003056,4.22e-14,49;UBERON:0002346,2.86e-13,64;UBERON:0003075,2.86e-13,64;UBERON:0007284,2.86e-13,64;UBERON:0002619,3.67e-13,17;UBERON:0001444,5.03e-13,11;UBERON:0000020,5.70e-12,12;UBERON:0001032,5.70e-12,12;UBERON:0004456,5.70e-12,12;UBERON:0010371,1.42e-11,73;UBERON:0000033,4.46e-11,13;UBERON:0005085,4.46e-11,13;UBERON:0000956,1.12e-10,21;UBERON:0001869,1.12e-10,21;UBERON:0000203,1.12e-10,21;UBERON:0010314,4.56e-09,92;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0003528,9.59e-08,29;UBERON:0002791,9.59e-08,29;UBERON:0001893,9.59e-08,29 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207379224616955,0,0.210324961351382,0,0,0.122490799214954,0,0,0,0.255374676170375,0,0,0.274462930807229,0,0,0.56276261003168,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0.878342391034642,0.209446706813455,0,0,0,0,0.149790639404823,0.915001205637253,0.376963056338593,0.173824320192276,0.511430914660661,0,0.162241263067758,0,0,0,0.210441855886474,0.260240885925407,0,0,1.05493372485001,1.08858398642125,3.20284300712124,0.843315521037559,1.03481348295606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514523061896422,0,0,0,0.232236671860439,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35163505977661,0,0,0,1.17131623288992,0.215423397732799,0,0,0.283076530788832,0,0.876767573733936,0.395287777946524,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0,0.129358683782755,0,0.177340233642274,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25900737046827,0.460325236507177,1.71868654031819,0.515559547031063,0,1.5107877947794,0,1.80128481289688,0.453142408984205,1.03552062350364,0.103787347584177,0,0,0,0,0,0.222246727801615,0,0,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0,0,0.463537303779422,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0.188218760830661,0.0846146078916765,0.365855945745545,0.263069711437843,0.407412341537585,0.561142271657738,0,0.197008964751127,0,0.464810523557898,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p@chr5:116995859..116995889,- | |||
}} |
Revision as of 06:09, 14 September 2013
Short description: | p@chr5:116995859..116995889, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:116995859..116995889, - |
Coexpression cluster: | MCL_coexpression_mm9:408 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 3.00e-22 | 10 |
visual cortex | 3.00e-22 | 10 |
neocortex | 3.00e-22 | 10 |
eye | 7.89e-16 | 9 |
camera-type eye | 7.89e-16 | 9 |
simple eye | 7.89e-16 | 9 |
immature eye | 7.89e-16 | 9 |
ocular region | 7.89e-16 | 9 |
visual system | 7.89e-16 | 9 |
face | 7.89e-16 | 9 |
optic cup | 7.89e-16 | 9 |
optic vesicle | 7.89e-16 | 9 |
eye primordium | 7.89e-16 | 9 |
pre-chordal neural plate | 4.22e-14 | 49 |
neurectoderm | 2.86e-13 | 64 |
neural plate | 2.86e-13 | 64 |
presumptive neural plate | 2.86e-13 | 64 |
regional part of cerebral cortex | 3.67e-13 | 17 |
subdivision of head | 5.03e-13 | 11 |
sense organ | 5.70e-12 | 12 |
sensory system | 5.70e-12 | 12 |
entire sense organ system | 5.70e-12 | 12 |
ecto-epithelium | 1.42e-11 | 73 |
head | 4.46e-11 | 13 |
ectodermal placode | 4.46e-11 | 13 |
cerebral cortex | 1.12e-10 | 21 |
cerebral hemisphere | 1.12e-10 | 21 |
pallium | 1.12e-10 | 21 |
structure with developmental contribution from neural crest | 4.56e-09 | 92 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
brain grey matter | 9.59e-08 | 29 |
regional part of telencephalon | 9.59e-08 | 29 |
telencephalon | 9.59e-08 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.