FFCP PHASE1:Hg19::chr8:62627359..62627372,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100616484|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=41833|TSSclassifier=S|UniProt=|association_with_transcript=12bp_to_NR_039680_5end|coexpression_cluster_id=C0|description=CAGE_peak_3_at_MIR4470_5end|id=chr8:62627359..62627372,+|ontology_enrichment_celltype=CL:0000860!9.51e-40!45;CL:0002057!1.09e-36!42;CL:0002009!5.39e-32!65;CL:0002194!1.22e-31!63;CL:0000576!1.22e-31!63;CL:0000040!1.22e-31!63;CL:0000559!1.22e-31!63;CL:0000766!3.97e-28!76;CL:0000557!5.72e-28!71;CL:0000839!5.95e-27!70;CL:0002087!1.41e-23!119;CL:0000738!3.85e-23!140;CL:0002031!4.47e-20!124;CL:0000763!1.32e-18!112;CL:0000049!1.32e-18!112;CL:0000037!3.71e-18!172;CL:0000566!3.71e-18!172;CL:0000988!4.93e-16!182;CL:0002032!9.67e-16!165;CL:0000837!9.67e-16!165;CL:0002320!1.33e-12!365;CL:0000134!2.23e-12!358;CL:0000219!4.81e-12!390;CL:0000048!1.98e-11!430;CL:0000723!2.64e-11!436;CL:0000034!1.46e-10!444;CL:0002371!3.06e-07!591|ontology_enrichment_celltype_v019=CL:0000860;4.81e-129;33!CL:0002057;4.81e-129;33!CL:0000473;1.95e-94;39!CL:0000234;1.95e-94;39!CL:0000576;7.51e-64;48!CL:0000766;5.08e-38;69!CL:0000763;2.58e-19;100!CL:0002087;1.22e-15;104!CL:0000738;3.95e-11;136|ontology_enrichment_celltype_v019_2=CL:0000860,6.98e-119,42;CL:0002057,6.98e-119,42;CL:0000473,1.97e-110,48;CL:0000234,1.97e-110,48;CL:0002194,3.14e-87,59;CL:0000576,3.14e-87,59;CL:0000040,3.14e-87,59;CL:0000559,3.14e-87,59;CL:0002009,3.10e-84,61;CL:0000839,1.57e-77,66;CL:0000557,2.63e-76,67;CL:0000766,1.80e-75,72;CL:0000763,1.19e-48,108;CL:0000049,1.19e-48,108;CL:0002087,2.26e-42,115;CL:0002031,2.21e-40,120;CL:0000738,1.62e-37,136;CL:0002032,8.05e-31,161;CL:0000837,8.05e-31,161;CL:0000037,2.67e-29,168;CL:0000988,1.61e-27,177;CL:0000134,8.48e-13,354;CL:0002320,1.98e-12,361;CL:0000219,3.95e-11,386;CL:0000048,1.94e-10,427;CL:0000723,3.31e-10,433;CL:0000034,6.61e-10,441|ontology_enrichment_development_v019=CL:0002057;7.00e-86;42!CL:0000049;1.11e-15;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.22e-28!80;UBERON:0001474!3.05e-25!86;UBERON:0002390!5.40e-24!102;UBERON:0003061!5.40e-24!102;UBERON:0004765!2.90e-22!101;UBERON:0001434!2.90e-22!101;UBERON:0002193!3.87e-21!112;UBERON:0002405!5.47e-19!115;UBERON:0002204!5.48e-14!167;UBERON:0002384!1.56e-11!375;UBERON:0003081!5.69e-09!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.96e-67,76;UBERON:0001474,1.71e-61,82;UBERON:0004765,1.38e-55,90;UBERON:0002405,1.24e-53,93;UBERON:0002390,1.24e-50,98;UBERON:0003061,1.24e-50,98;UBERON:0001434,1.62e-49,100;UBERON:0002193,1.84e-45,108;UBERON:0002204,1.69e-29,167;UBERON:0003081,3.03e-23,203;UBERON:0000926,3.85e-15,315;UBERON:0004120,3.85e-15,315;UBERON:0006603,3.85e-15,315;UBERON:0002384,6.31e-12,371|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0,0,0,0.0821005894499457,0,0,0,0.309632246632152,0,0,0.369754010166788,0,0,0.293600439334847,0.553995408531877,1.20326668482085,0.651032612147555,0,0,0,3.19876125315042,0,2.18325655069035,5.81072592264212,4.11167888021826,6.19412741790207,15.8230815777183,7.68482119587302,17.9726494715325,17.9267753983042,9.68227025375739,14.8969135253776,3.38836211176688,3.27487380069415,6.51698104890745,11.3251040177234,12.8371610830437,6.39337125799041,1.64925650093358,3.78980949481101,2.98357325372886,10.7377418292576,9.64554881974938,13.7020894779026,10.0499466102697,4.69334626578181,12.5969529928968,15.1349875658342,11.7848843516021,18.9877432464531,0,0.212604299965044,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0.593146252648242,0.267540828089713,0,0,0,0.34362744548263,0,0,0,0,0.301150238155546,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0.722878304769133,0.50133791063589,0,0,0.486634870302636,0.189069634328136,0,0,0.0654895377488563,0,0,0.324547393654683,0,0,0.715471872916026,0,0.74291500265913,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0.949265659568129,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0.277064115484183,0,0.30648779579902,0,0,0,0.213557388818567,0,0,0.206105058476878,0,0,0,0.0974370051611986,0,0.184099797284599,0,0,0.10075209822764,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0.464367928031979,0,0,0.337169380156203,0,0.441175890929576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,0.749007023947182,0,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100616484 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=41833 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=12bp_to_NR_039680_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_3_at_MIR4470_5end | |||
|id=chr8:62627359..62627372,+ | |||
|ontology_enrichment_celltype=CL:0000860!9.51e-40!45;CL:0002057!1.09e-36!42;CL:0002009!5.39e-32!65;CL:0002194!1.22e-31!63;CL:0000576!1.22e-31!63;CL:0000040!1.22e-31!63;CL:0000559!1.22e-31!63;CL:0000766!3.97e-28!76;CL:0000557!5.72e-28!71;CL:0000839!5.95e-27!70;CL:0002087!1.41e-23!119;CL:0000738!3.85e-23!140;CL:0002031!4.47e-20!124;CL:0000763!1.32e-18!112;CL:0000049!1.32e-18!112;CL:0000037!3.71e-18!172;CL:0000566!3.71e-18!172;CL:0000988!4.93e-16!182;CL:0002032!9.67e-16!165;CL:0000837!9.67e-16!165;CL:0002320!1.33e-12!365;CL:0000134!2.23e-12!358;CL:0000219!4.81e-12!390;CL:0000048!1.98e-11!430;CL:0000723!2.64e-11!436;CL:0000034!1.46e-10!444;CL:0002371!3.06e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.81e-129;33!CL:0002057;4.81e-129;33!CL:0000473;1.95e-94;39!CL:0000234;1.95e-94;39!CL:0000576;7.51e-64;48!CL:0000766;5.08e-38;69!CL:0000763;2.58e-19;100!CL:0002087;1.22e-15;104!CL:0000738;3.95e-11;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.98e-119,42;CL:0002057,6.98e-119,42;CL:0000473,1.97e-110,48;CL:0000234,1.97e-110,48;CL:0002194,3.14e-87,59;CL:0000576,3.14e-87,59;CL:0000040,3.14e-87,59;CL:0000559,3.14e-87,59;CL:0002009,3.10e-84,61;CL:0000839,1.57e-77,66;CL:0000557,2.63e-76,67;CL:0000766,1.80e-75,72;CL:0000763,1.19e-48,108;CL:0000049,1.19e-48,108;CL:0002087,2.26e-42,115;CL:0002031,2.21e-40,120;CL:0000738,1.62e-37,136;CL:0002032,8.05e-31,161;CL:0000837,8.05e-31,161;CL:0000037,2.67e-29,168;CL:0000988,1.61e-27,177;CL:0000134,8.48e-13,354;CL:0002320,1.98e-12,361;CL:0000219,3.95e-11,386;CL:0000048,1.94e-10,427;CL:0000723,3.31e-10,433;CL:0000034,6.61e-10,441 | |||
|ontology_enrichment_development_v019=CL:0002057;7.00e-86;42!CL:0000049;1.11e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.22e-28!80;UBERON:0001474!3.05e-25!86;UBERON:0002390!5.40e-24!102;UBERON:0003061!5.40e-24!102;UBERON:0004765!2.90e-22!101;UBERON:0001434!2.90e-22!101;UBERON:0002193!3.87e-21!112;UBERON:0002405!5.47e-19!115;UBERON:0002204!5.48e-14!167;UBERON:0002384!1.56e-11!375;UBERON:0003081!5.69e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.96e-67,76;UBERON:0001474,1.71e-61,82;UBERON:0004765,1.38e-55,90;UBERON:0002405,1.24e-53,93;UBERON:0002390,1.24e-50,98;UBERON:0003061,1.24e-50,98;UBERON:0001434,1.62e-49,100;UBERON:0002193,1.84e-45,108;UBERON:0002204,1.69e-29,167;UBERON:0003081,3.03e-23,203;UBERON:0000926,3.85e-15,315;UBERON:0004120,3.85e-15,315;UBERON:0006603,3.85e-15,315;UBERON:0002384,6.31e-12,371 | |||
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|short_description=p3@MIR4470 | |||
}} |
Revision as of 05:44, 14 September 2013
Short description: | p3@MIR4470 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_MIR4470_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 12bp_to_NR_039680_5end |
EntrezGene: | MIR4470 |
HGNC: | 41833 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.98e-119 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.98e-119 | 42 |
defensive cell | 1.97e-110 | 48 |
phagocyte | 1.97e-110 | 48 |
monopoietic cell | 3.14e-87 | 59 |
monocyte | 3.14e-87 | 59 |
monoblast | 3.14e-87 | 59 |
promonocyte | 3.14e-87 | 59 |
macrophage dendritic cell progenitor | 3.10e-84 | 61 |
myeloid lineage restricted progenitor cell | 1.57e-77 | 66 |
granulocyte monocyte progenitor cell | 2.63e-76 | 67 |
myeloid leukocyte | 1.80e-75 | 72 |
myeloid cell | 1.19e-48 | 108 |
common myeloid progenitor | 1.19e-48 | 108 |
nongranular leukocyte | 2.26e-42 | 115 |
hematopoietic lineage restricted progenitor cell | 2.21e-40 | 120 |
leukocyte | 1.62e-37 | 136 |
hematopoietic oligopotent progenitor cell | 8.05e-31 | 161 |
hematopoietic multipotent progenitor cell | 8.05e-31 | 161 |
hematopoietic stem cell | 2.67e-29 | 168 |
hematopoietic cell | 1.61e-27 | 177 |
mesenchymal cell | 8.48e-13 | 354 |
connective tissue cell | 1.98e-12 | 361 |
motile cell | 3.95e-11 | 386 |
multi fate stem cell | 1.94e-10 | 427 |
somatic stem cell | 3.31e-10 | 433 |
stem cell | 6.61e-10 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.96e-67 | 76 |
bone element | 1.71e-61 | 82 |
skeletal element | 1.38e-55 | 90 |
immune system | 1.24e-53 | 93 |
hematopoietic system | 1.24e-50 | 98 |
blood island | 1.24e-50 | 98 |
skeletal system | 1.62e-49 | 100 |
hemolymphoid system | 1.84e-45 | 108 |
musculoskeletal system | 1.69e-29 | 167 |
lateral plate mesoderm | 3.03e-23 | 203 |
mesoderm | 3.85e-15 | 315 |
mesoderm-derived structure | 3.85e-15 | 315 |
presumptive mesoderm | 3.85e-15 | 315 |
connective tissue | 6.31e-12 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.