FFCP PHASE1:Hg19::chr8:21990868..21990906,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55806|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5172|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000518377_5end|coexpression_cluster_id=C193|description=CAGE_peak_2_at_HR_5end|id=chr8:21990868..21990906,-|ontology_enrichment_celltype=CL:0000055!1.53e-14!180;CL:0000057!1.24e-12!75;CL:0002620!7.57e-08!23|ontology_enrichment_celltype_v019=CL:0002620;8.31e-08;23|ontology_enrichment_celltype_v019_2=CL:0000057,4.25e-10,76;CL:0002620,6.94e-08,23|ontology_enrichment_development_v019=UBERON:0006601;4.42e-07;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.79e-18!94;UBERON:0001016!4.79e-18!94;UBERON:0007023!4.31e-17!115;UBERON:0000475!5.96e-17!365;UBERON:0000924!8.96e-17!173;UBERON:0006601!8.96e-17!173;UBERON:0005743!1.19e-16!86;UBERON:0004121!1.85e-15!169;UBERON:0001017!4.10e-15!82;UBERON:0002346!1.10e-14!90;UBERON:0000955!1.52e-14!69;UBERON:0006238!1.52e-14!69;UBERON:0001049!1.50e-13!57;UBERON:0005068!1.50e-13!57;UBERON:0006241!1.50e-13!57;UBERON:0007135!1.50e-13!57;UBERON:0003075!2.90e-13!86;UBERON:0007284!2.90e-13!86;UBERON:0000033!8.99e-13!123;UBERON:0000153!1.27e-12!129;UBERON:0007811!1.27e-12!129;UBERON:0002616!6.48e-11!59;UBERON:0000481!9.03e-10!347;UBERON:0000064!2.81e-09!219;UBERON:0000468!3.82e-09!659;UBERON:0003080!6.53e-09!42;UBERON:0002780!8.60e-09!41;UBERON:0001890!8.60e-09!41;UBERON:0006240!8.60e-09!41;UBERON:0003056!1.86e-08!61;UBERON:0003102!1.98e-08!95;UBERON:0002097!2.23e-08!40;UBERON:0002199!4.70e-08!45;UBERON:0002416!4.70e-08!45;UBERON:0000062!5.45e-08!511;UBERON:0000063!2.53e-07!97;UBERON:0001950!7.00e-07!20|ontology_enrichment_uberon_v019=UBERON:0000073;2.42e-08;53!UBERON:0002616;2.42e-08;53!UBERON:0001950;8.56e-08;20!UBERON:0002780;3.79e-07;41!UBERON:0001890;3.79e-07;41!UBERON:0002097;4.69e-07;41!UBERON:0000955;6.27e-07;68|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.63e-18,171;UBERON:0000924,2.63e-18,171;UBERON:0006601,2.63e-18,171;UBERON:0001016,2.48e-16,89;UBERON:0002346,9.85e-16,86;UBERON:0010371,7.96e-15,104;UBERON:0003075,1.74e-14,82;UBERON:0007284,1.74e-14,82;UBERON:0001017,4.25e-14,81;UBERON:0000955,7.21e-14,68;UBERON:0006238,7.21e-14,68;UBERON:0000073,1.09e-13,53;UBERON:0002616,1.09e-13,53;UBERON:0001049,3.35e-13,56;UBERON:0005068,3.35e-13,56;UBERON:0006241,3.35e-13,56;UBERON:0007135,3.35e-13,56;UBERON:0011216,2.57e-12,223;UBERON:0007023,4.26e-12,114;UBERON:0010314,1.40e-11,132;UBERON:0002780,1.57e-09,41;UBERON:0001890,1.57e-09,41;UBERON:0003080,1.57e-09,41;UBERON:0006240,1.57e-09,41;UBERON:0003056,2.67e-09,61;UBERON:0002199,6.25e-09,46;UBERON:0002416,6.25e-09,46;UBERON:0002097,6.43e-09,41;UBERON:0003102,6.60e-08,99;UBERON:0001950,8.50e-08,20|phase1_expression=7.44881355009282,6.85121676451146,6.48390258841467,9.00659685178174,13.8557939272459,0,0,0,1.56711376919903,0,0,0,0,9.40624282496354,8.61633176892581,0,0,0,0,0.61560529038394,0.408001382488506,3.13454721478088,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0,0,0.383829398097213,0.309632246632152,0,1.204823675113,0.369754010166788,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,0,0.255725123687061,0.361439152384566,4.51204119572301,3.47631645505977,0.795285947051099,2.91980922181582,0,0,0.087834785693126,3.01251873644739,5.10013403609559,2.59549109949101,0.649094787309367,0.348259474598534,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.496971951695318,0.25326102332916,0.264818361626438,2.29469296599051,0.354668382198357,0.560677600142307,0,0.74000264525148,4.04574346019696,0.404132016209064,0.163461903113459,0,0,0.70296429550139,1.5608003841516,0.570471821544449,1.34503812496621,0.352303495931295,0.161872944368132,0,2.04154171254893,0.245668634623536,6.30287265172169,10.6920257155385,5.43987244412825,4.55080680969013,1.43723628363248,0,0.500474079487857,0.831192346452549,4.38977620880838,3.0648779579902,7.51190294532984,0.113432183160021,2.87023417102179,9.39652510801697,7.2056846394251,6.00182192168805,11.8510408624205,6.1833729610951,5.21127197728451,2.53164498361899,5.45647228902712,7.57301322732343,11.7823870262143,12.1234542614109,4.61512470271599,1.5112814734146,2.88253006927829,0,0,0,0,0,0,0,0,0,1.56449532329816,7.07565032012174,4.14404764057442,25.0758681137269,19.4907460050788,0.709840800239063,0.505754070234305,0.241011029883482,0.441175890929576,0.653638332277218,0.237270619111097,0.674156540800822,0.392442930250692,0.769494313892781,0,0,2.8810180793198,7.3504355692771,0,0,0,0,0.245976877086227,0,0,0,0,1.38882667737794,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.414656231081544,0.576479813667846,1.13618190083742,0,0.381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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55806 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5172 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000518377_5end | |||
|coexpression_cluster_id=C193 | |||
|description=CAGE_peak_2_at_HR_5end | |||
|id=chr8:21990868..21990906,- | |||
|ontology_enrichment_celltype=CL:0000055!1.53e-14!180;CL:0000057!1.24e-12!75;CL:0002620!7.57e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.31e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.25e-10,76;CL:0002620,6.94e-08,23 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.42e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.79e-18!94;UBERON:0001016!4.79e-18!94;UBERON:0007023!4.31e-17!115;UBERON:0000475!5.96e-17!365;UBERON:0000924!8.96e-17!173;UBERON:0006601!8.96e-17!173;UBERON:0005743!1.19e-16!86;UBERON:0004121!1.85e-15!169;UBERON:0001017!4.10e-15!82;UBERON:0002346!1.10e-14!90;UBERON:0000955!1.52e-14!69;UBERON:0006238!1.52e-14!69;UBERON:0001049!1.50e-13!57;UBERON:0005068!1.50e-13!57;UBERON:0006241!1.50e-13!57;UBERON:0007135!1.50e-13!57;UBERON:0003075!2.90e-13!86;UBERON:0007284!2.90e-13!86;UBERON:0000033!8.99e-13!123;UBERON:0000153!1.27e-12!129;UBERON:0007811!1.27e-12!129;UBERON:0002616!6.48e-11!59;UBERON:0000481!9.03e-10!347;UBERON:0000064!2.81e-09!219;UBERON:0000468!3.82e-09!659;UBERON:0003080!6.53e-09!42;UBERON:0002780!8.60e-09!41;UBERON:0001890!8.60e-09!41;UBERON:0006240!8.60e-09!41;UBERON:0003056!1.86e-08!61;UBERON:0003102!1.98e-08!95;UBERON:0002097!2.23e-08!40;UBERON:0002199!4.70e-08!45;UBERON:0002416!4.70e-08!45;UBERON:0000062!5.45e-08!511;UBERON:0000063!2.53e-07!97;UBERON:0001950!7.00e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.42e-08;53!UBERON:0002616;2.42e-08;53!UBERON:0001950;8.56e-08;20!UBERON:0002780;3.79e-07;41!UBERON:0001890;3.79e-07;41!UBERON:0002097;4.69e-07;41!UBERON:0000955;6.27e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.63e-18,171;UBERON:0000924,2.63e-18,171;UBERON:0006601,2.63e-18,171;UBERON:0001016,2.48e-16,89;UBERON:0002346,9.85e-16,86;UBERON:0010371,7.96e-15,104;UBERON:0003075,1.74e-14,82;UBERON:0007284,1.74e-14,82;UBERON:0001017,4.25e-14,81;UBERON:0000955,7.21e-14,68;UBERON:0006238,7.21e-14,68;UBERON:0000073,1.09e-13,53;UBERON:0002616,1.09e-13,53;UBERON:0001049,3.35e-13,56;UBERON:0005068,3.35e-13,56;UBERON:0006241,3.35e-13,56;UBERON:0007135,3.35e-13,56;UBERON:0011216,2.57e-12,223;UBERON:0007023,4.26e-12,114;UBERON:0010314,1.40e-11,132;UBERON:0002780,1.57e-09,41;UBERON:0001890,1.57e-09,41;UBERON:0003080,1.57e-09,41;UBERON:0006240,1.57e-09,41;UBERON:0003056,2.67e-09,61;UBERON:0002199,6.25e-09,46;UBERON:0002416,6.25e-09,46;UBERON:0002097,6.43e-09,41;UBERON:0003102,6.60e-08,99;UBERON:0001950,8.50e-08,20 | |||
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| |||
|short_description=p2@HR | |||
}} |
Revision as of 04:34, 14 September 2013
Short description: | p2@HR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_HR_5end |
Coexpression cluster: | C193_Mesenchymal_Adipocyte_mature_Cardiac_heart_CD14CD16_CD14 |
Association with transcript: | 0bp_to_ENST00000518377_5end |
EntrezGene: | HR |
HGNC: | 5172 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.25e-10 | 76 |
skin fibroblast | 6.94e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.63e-18 | 171 |
ectoderm | 2.63e-18 | 171 |
presumptive ectoderm | 2.63e-18 | 171 |
nervous system | 2.48e-16 | 89 |
neurectoderm | 9.85e-16 | 86 |
ecto-epithelium | 7.96e-15 | 104 |
neural plate | 1.74e-14 | 82 |
presumptive neural plate | 1.74e-14 | 82 |
central nervous system | 4.25e-14 | 81 |
brain | 7.21e-14 | 68 |
future brain | 7.21e-14 | 68 |
regional part of nervous system | 1.09e-13 | 53 |
regional part of brain | 1.09e-13 | 53 |
neural tube | 3.35e-13 | 56 |
neural rod | 3.35e-13 | 56 |
future spinal cord | 3.35e-13 | 56 |
neural keel | 3.35e-13 | 56 |
organ system subdivision | 2.57e-12 | 223 |
adult organism | 4.26e-12 | 114 |
structure with developmental contribution from neural crest | 1.40e-11 | 132 |
regional part of forebrain | 1.57e-09 | 41 |
forebrain | 1.57e-09 | 41 |
anterior neural tube | 1.57e-09 | 41 |
future forebrain | 1.57e-09 | 41 |
pre-chordal neural plate | 2.67e-09 | 61 |
integument | 6.25e-09 | 46 |
integumental system | 6.25e-09 | 46 |
skin of body | 6.43e-09 | 41 |
surface structure | 6.60e-08 | 99 |
neocortex | 8.50e-08 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.