FFCP PHASE1:Mm9::chr4:115726430..115726454,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72181|HGNC=|UniProt=Q9CZ57|association_with_transcript=26bp_to_ENSMUST00000030475,NM_028142,uc008ufu.2_5end|description=CAGE_peak_2_at_Nsun4_5end|id=chr4:115726430..115726454,-|ontology_enrichment_celltype=CL:0000791!4.52e-07!9;CL:0000789!4.52e-07!9;CL:0002420!4.52e-07!9;CL:0002419!4.52e-07!9;CL:0000790!4.52e-07!9|ontology_enrichment_celltype_v019_2=CL:0000791,4.51e-07,9;CL:0000789,4.51e-07,9;CL:0002420,4.51e-07,9;CL:0002419,4.51e-07,9;CL:0000790,4.51e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005911!2.52e-13!69;UBERON:0001007!2.97e-12!128;UBERON:0001555!2.97e-12!128;UBERON:0007026!2.97e-12!128;UBERON:0004119!1.40e-11!130;UBERON:0000925!1.40e-11!130;UBERON:0006595!1.40e-11!130;UBERON:0004921!1.89e-11!126;UBERON:0004185!1.89e-11!126;UBERON:0009569!1.14e-09!66;UBERON:0001041!6.12e-09!92;UBERON:0001048!1.30e-08!147;UBERON:0000065!1.33e-08!41;UBERON:0001004!2.42e-08!42;UBERON:0003104!5.22e-08!131;UBERON:0009142!5.22e-08!131;UBERON:0003929!1.07e-07!55;UBERON:0005057!1.27e-07!51;UBERON:0000077!1.54e-07!97;UBERON:0002048!1.60e-07!14;UBERON:0000117!1.60e-07!14;UBERON:0000171!1.60e-07!14;UBERON:0000170!1.60e-07!14;UBERON:0005597!1.60e-07!14;UBERON:0000118!1.60e-07!14;UBERON:0005178!2.62e-07!17;UBERON:0005181!2.62e-07!17;UBERON:0002224!2.62e-07!17;UBERON:0000915!2.62e-07!17;UBERON:0008947!2.62e-07!17;UBERON:0003258!2.62e-07!17;UBERON:0000490!2.72e-07!66;UBERON:0002368!2.89e-07!60;UBERON:0005153!9.73e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.80e-14,116;UBERON:0001555,1.80e-14,116;UBERON:0007026,1.80e-14,116;UBERON:0004119,1.11e-13,118;UBERON:0000925,1.11e-13,118;UBERON:0006595,1.11e-13,118;UBERON:0004921,1.36e-13,114;UBERON:0005911,2.31e-13,69;UBERON:0001041,2.64e-11,80;UBERON:0001048,9.56e-10,134;UBERON:0009569,1.14e-09,66;UBERON:0000065,1.22e-08,41;UBERON:0001004,2.23e-08,42;UBERON:0003929,9.98e-08,55;UBERON:0002048,1.59e-07,14;UBERON:0000117,1.59e-07,14;UBERON:0000171,1.59e-07,14;UBERON:0000170,1.59e-07,14;UBERON:0005597,1.59e-07,14;UBERON:0000118,1.59e-07,14;UBERON:0000490,2.55e-07,66;UBERON:0005178,2.62e-07,17;UBERON:0005181,2.62e-07,17;UBERON:0002224,2.62e-07,17;UBERON:0000915,2.62e-07,17;UBERON:0008947,2.62e-07,17;UBERON:0003258,2.62e-07,17;UBERON:0002368,2.71e-07,60;UBERON:0005177,2.71e-07,79;UBERON:0005153,9.72e-07,17|phase1_expression=3.84357233051505,3.83872948403297,5.91499011206397,7.56160528267075,2.50447864973174,4.19698179779725,3.73780224952841,9.42600261123507,12.1078301050433,15.4482587372516,10.2730780935303,6.38177271962691,8.56003649656029,8.39235863222375,1.33243904726265,2.02475267389826,2.79824751251259,4.73193248037357,4.2505474417779,4.66828616977833,3.91199134694921,2.87943758482567,3.91799683708403,6.71968175732308,6.65286915094793,5.7423196411502,5.1691439539089,6.03319451520489,2.28028103347649,2.26827116783938,4.21287970245079,0.635030673459631,1.84519436275371,0,2.59966457776147,1.99481574430191,2.6542016314108,3.76678467663217,3.1253413780952,2.09409497589519,4.70585190424811,2.04913645487534,7.2826552954673,2.89562681343828,1.82478476195126,3.85448179539531,1.56478268869608,2.61630187656536,7.46933021297204,4.27745777963423,4.19959264876088,4.31257693094915,7.88578248471361,21.7608642603403,14.1159395639835,4.11615097657515,4.87106847895886,6.70373719960675,0.809265843438391,2.11596391708813,0.633831403506179,1.69422266034566,3.55717918444456,1.7997994345628,0.988866362566974,1.4209602298922,1.49800055259202,1.53687322128622,1.03689612308478,1.35005938331691,1.89292465216244,2.85650984403804,1.54607978666129,1.10241719293459,1.0543001812006,0,0,1.27687338085188,2.91852413186863,0.923204014111357,1.55528994124096,2.08365348222704,3.07101298901519,2.25105044012672,2.90316670775939,0.589257170947335,1.70846016958924,1.67759501242771,4.16494063332512,3.32514864469856,5.50742528533188,6.0229671388697,6.11974200336975,11.3337670243942,6.49776417447669,5.82434953226536,5.75822122540183,3.91989741929533,2.07828803682295,2.47337702157238,3.80277233397037,5.13305909657271,0,0,3.89683873820185,4.81383744402687,3.53867111510348,4.45317130904334,9.58070169494535,5.34391700633369,3.64319186208885,5.48037860961854,1.84492397804847,4.06951129492081,4.46837087115678,5.27799683584637,4.20231445148436,4.19338135067744,0,3.23533699894818,3.5334642953663,3.87900202508178,3.72783522436244,2.92780797011547,1.46612694769419,3.57639877292028,2.15667224110656,1.19980546198682,2.92261522268049,2.54644086988199,1.37250180845588,0.502617408451458,3.12883776346098,1.02286182932132,1.45451631191692,2.27137768294861,2.95334155165917,3.23458123586242,1.76905930903572,4.41927897361595,3.77349284591841,2.98872735763515,2.52086981727489,2.56198190320716,2.9255694635071,3.58718416797579,1.78033276663485,4.39795730256327,2.15567992932842,1.51284864134255,1.75951124163949,3.06874025398605,5.28289773528636,3.48252166522167,2.46938563689532,2.9855140022774,1.40442637462647,1.80143534980301,2.84163499395593,3.72826390563903,7.035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| ||
|EntrezGene=72181 | |||
|HGNC= | |||
|UniProt=Q9CZ57 | |||
|association_with_transcript=26bp_to_ENSMUST00000030475,NM_028142,uc008ufu.2_5end | |||
|description=CAGE_peak_2_at_Nsun4_5end | |||
|id=chr4:115726430..115726454,- | |||
|ontology_enrichment_celltype=CL:0000791!4.52e-07!9;CL:0000789!4.52e-07!9;CL:0002420!4.52e-07!9;CL:0002419!4.52e-07!9;CL:0000790!4.52e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.51e-07,9;CL:0000789,4.51e-07,9;CL:0002420,4.51e-07,9;CL:0002419,4.51e-07,9;CL:0000790,4.51e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005911!2.52e-13!69;UBERON:0001007!2.97e-12!128;UBERON:0001555!2.97e-12!128;UBERON:0007026!2.97e-12!128;UBERON:0004119!1.40e-11!130;UBERON:0000925!1.40e-11!130;UBERON:0006595!1.40e-11!130;UBERON:0004921!1.89e-11!126;UBERON:0004185!1.89e-11!126;UBERON:0009569!1.14e-09!66;UBERON:0001041!6.12e-09!92;UBERON:0001048!1.30e-08!147;UBERON:0000065!1.33e-08!41;UBERON:0001004!2.42e-08!42;UBERON:0003104!5.22e-08!131;UBERON:0009142!5.22e-08!131;UBERON:0003929!1.07e-07!55;UBERON:0005057!1.27e-07!51;UBERON:0000077!1.54e-07!97;UBERON:0002048!1.60e-07!14;UBERON:0000117!1.60e-07!14;UBERON:0000171!1.60e-07!14;UBERON:0000170!1.60e-07!14;UBERON:0005597!1.60e-07!14;UBERON:0000118!1.60e-07!14;UBERON:0005178!2.62e-07!17;UBERON:0005181!2.62e-07!17;UBERON:0002224!2.62e-07!17;UBERON:0000915!2.62e-07!17;UBERON:0008947!2.62e-07!17;UBERON:0003258!2.62e-07!17;UBERON:0000490!2.72e-07!66;UBERON:0002368!2.89e-07!60;UBERON:0005153!9.73e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.80e-14,116;UBERON:0001555,1.80e-14,116;UBERON:0007026,1.80e-14,116;UBERON:0004119,1.11e-13,118;UBERON:0000925,1.11e-13,118;UBERON:0006595,1.11e-13,118;UBERON:0004921,1.36e-13,114;UBERON:0005911,2.31e-13,69;UBERON:0001041,2.64e-11,80;UBERON:0001048,9.56e-10,134;UBERON:0009569,1.14e-09,66;UBERON:0000065,1.22e-08,41;UBERON:0001004,2.23e-08,42;UBERON:0003929,9.98e-08,55;UBERON:0002048,1.59e-07,14;UBERON:0000117,1.59e-07,14;UBERON:0000171,1.59e-07,14;UBERON:0000170,1.59e-07,14;UBERON:0005597,1.59e-07,14;UBERON:0000118,1.59e-07,14;UBERON:0000490,2.55e-07,66;UBERON:0005178,2.62e-07,17;UBERON:0005181,2.62e-07,17;UBERON:0002224,2.62e-07,17;UBERON:0000915,2.62e-07,17;UBERON:0008947,2.62e-07,17;UBERON:0003258,2.62e-07,17;UBERON:0002368,2.71e-07,60;UBERON:0005177,2.71e-07,79;UBERON:0005153,9.72e-07,17 | |||
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| |||
|short_description=p2@Nsun4 | |||
}} |
Revision as of 03:30, 14 September 2013
Short description: | p2@Nsun4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nsun4_5end |
Coexpression cluster: | NA |
Association with transcript: | 26bp_to_ENSMUST00000030475, NM_028142, uc008ufu.2_5end |
EntrezGene: | Nsun4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.51e-07 | 9 |
alpha-beta T cell | 4.51e-07 | 9 |
immature T cell | 4.51e-07 | 9 |
mature T cell | 4.51e-07 | 9 |
immature alpha-beta T cell | 4.51e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
digestive system | 1.80e-14 | 116 |
digestive tract | 1.80e-14 | 116 |
primitive gut | 1.80e-14 | 116 |
endoderm-derived structure | 1.11e-13 | 118 |
endoderm | 1.11e-13 | 118 |
presumptive endoderm | 1.11e-13 | 118 |
subdivision of digestive tract | 1.36e-13 | 114 |
endo-epithelium | 2.31e-13 | 69 |
foregut | 2.64e-11 | 80 |
primordium | 9.56e-10 | 134 |
subdivision of trunk | 1.14e-09 | 66 |
respiratory tract | 1.22e-08 | 41 |
respiratory system | 2.23e-08 | 42 |
gut epithelium | 9.98e-08 | 55 |
lung | 1.59e-07 | 14 |
respiratory tube | 1.59e-07 | 14 |
respiration organ | 1.59e-07 | 14 |
pair of lungs | 1.59e-07 | 14 |
lung primordium | 1.59e-07 | 14 |
lung bud | 1.59e-07 | 14 |
unilaminar epithelium | 2.55e-07 | 66 |
thoracic cavity element | 2.62e-07 | 17 |
thoracic segment organ | 2.62e-07 | 17 |
thoracic cavity | 2.62e-07 | 17 |
thoracic segment of trunk | 2.62e-07 | 17 |
respiratory primordium | 2.62e-07 | 17 |
endoderm of foregut | 2.62e-07 | 17 |
endocrine gland | 2.71e-07 | 60 |
trunk region element | 2.71e-07 | 79 |
epithelial bud | 9.72e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.