FFCP PHASE1:Mm9::chr3:28162127..28162136,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=665113|HGNC=|UniProt=E9Q617,P83510,E0CYV5,B9EKN8,B2RQ80,B2RY17|association_with_transcript=0bp_to_ENSMUST00000092952,ENSMUST00000159236,ENSMUST00000160934,NM_001163007,NM_001163008,NM_001163009,NM_026910,uc008otx.2,uc008oty.1,uc012cob.1,uc012coc.1,uc012cod.1_5end|description=CAGE_peak_4_at_Tnik_5end|id=chr3:28162127..28162136,+|ontology_enrichment_celltype=CL:0000540!3.69e-10!33;CL:0000047!3.69e-10!33;CL:0000031!3.69e-10!33;CL:0000404!3.69e-10!33;CL:0000117!1.15e-09!23;CL:0000337!1.15e-09!23;CL:0000221!5.85e-08!44;CL:0000133!5.85e-08!44;CL:0002319!6.56e-08!43;CL:0000393!4.95e-07!39;CL:0000211!4.95e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.15e-19,33;CL:0000047,1.15e-19,33;CL:0000031,1.15e-19,33;CL:0000404,1.15e-19,33;CL:0000117,2.75e-19,23;CL:0000337,2.75e-19,23;CL:0000393,4.13e-16,39;CL:0000211,4.13e-16,39;CL:0002319,2.72e-14,43;CL:0000221,6.87e-14,44;CL:0000133,6.87e-14,44;CL:0002610,2.69e-10,3;CL:0002612,1.22e-09,3;CL:0002321,1.76e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.14e-18!73;UBERON:0005743!6.14e-18!73;UBERON:0000073!2.43e-17!75;UBERON:0001016!2.43e-17!75;UBERON:0004121!3.75e-15!102;UBERON:0000924!3.75e-15!102;UBERON:0006601!3.75e-15!102;UBERON:0001049!1.18e-13!52;UBERON:0005068!1.18e-13!52;UBERON:0006241!1.18e-13!52;UBERON:0007135!1.18e-13!52;UBERON:0000033!4.97e-13!63;UBERON:0000955!1.69e-12!50;UBERON:0006238!1.69e-12!50;UBERON:0002346!3.45e-12!71;UBERON:0003075!3.45e-12!71;UBERON:0007284!3.45e-12!71;UBERON:0002616!4.22e-12!49;UBERON:0002020!1.72e-10!34;UBERON:0003056!3.20e-10!49;UBERON:0007811!4.10e-09!86;UBERON:0003080!7.86e-09!40;UBERON:0002780!2.83e-08!39;UBERON:0001890!2.83e-08!39;UBERON:0006240!2.83e-08!39;UBERON:0002791!1.12e-07!29;UBERON:0003528!1.12e-07!29;UBERON:0001893!1.12e-07!29;UBERON:0000153!1.31e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.82e-22,73;UBERON:0001016,1.52e-21,75;UBERON:0003076,2.78e-18,12;UBERON:0003057,2.78e-18,12;UBERON:0000073,6.03e-18,54;UBERON:0002240,1.45e-16,6;UBERON:0005174,1.45e-16,6;UBERON:0001137,1.45e-16,6;UBERON:0004121,6.49e-16,95;UBERON:0000924,6.49e-16,95;UBERON:0006601,6.49e-16,95;UBERON:0001049,1.92e-14,52;UBERON:0005068,1.92e-14,52;UBERON:0006241,1.92e-14,52;UBERON:0007135,1.92e-14,52;UBERON:0001948,2.86e-14,5;UBERON:0002315,2.86e-14,5;UBERON:0002346,5.12e-11,64;UBERON:0003075,5.12e-11,64;UBERON:0007284,5.12e-11,64;UBERON:0004684,2.69e-10,3;UBERON:0002275,2.69e-10,3;UBERON:0002020,4.94e-10,34;UBERON:0002257,1.22e-09,3;UBERON:0010371,3.43e-09,73;UBERON:0002616,6.12e-07,46;UBERON:0000955,9.63e-07,47;UBERON:0006238,9.63e-07,47|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.17008658030214,0,0,0.639969691173627,0,0.57423196411502,0.86152399231815,0.215471232685889,0.380046838912748,0,0.443461021310609,0,0,0,0,0.166234645358492,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,0,0,0.336093799142464,0.257259436035947,0,0,1.21389876515759,1.05798195854407,0.633831403506179,0,0,0,0,0,0.299600110518405,0.768436610643109,0.933206510776299,1.35005938331691,0.210324961351382,1.14260393761521,1.10434270475807,0.61245399607477,0.191690942036473,0.919218786610021,2.20231761998777,1.40456071893706,2.15049146558741,0.923204014111357,2.01272815925301,0,0.558365998002762,0,1.98637722109853,2.06240009831567,1.28134512719193,1.3047961207771,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.11418387971906,0,0,0,0.304465478312141,0,0.60289056221049,0,0.125666591329675,0,0.289198713839823,0,0,0.220841518460394,0,0,2.04946557908083,3.14170060220183,0.510914110417183,0,0,0,1.64769703345305,0.457500602818626,0.502617408451458,0.347648640384553,0.511430914660661,1.0389402227978,0.648965052271031,0.101839363850316,0.124406970610093,0,0.841767423545896,0.390361328888111,0,0.360124259610698,0.452114453507145,0.340182495756639,0.512454881139399,0.468508622798644,0.517406741478031,0,0,0.351902248327898,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0.720248245844059,0.473489471170421,0,0.154267112887378,0.232533944750408,0.268273401399619,0,0.493679549740441,0,0.405344047729279,0.292399974850665,0,0.268412837520744,0.841159794256509,0.514523061896422,0,0,0,0,0.515469845288373,0.80673409849337,1.11189021922435,0.190225626112559,0.949058123089023,0.329397909448022,0.754005626400808,0.994782360205754,0.38992817423824,0,0,0,0.189667900953082,0.114248512609729,0,0.407302655690628,0.193952487167626,0.210407459670956,0.126473074248515,0,0.31399745568275,0,0,0,0,0,0,0.241177159752417,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0,0.339490171550376,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0.630540576424764,0.221464689648775,0.159454768657487,0.491589944147214,0,0.144649058581512,0,0,0.491764273019036,0.275936746304732,1.12385412991454,0.703270119553219,0,0.252470927204373,0,0,0.646270193198397,0.716906393857656,0.445597348164788,1.13230612315533,1.21443210502468,1.75353514746787,0.395287777946524,0.642642632843614,0.141940085208269,0,0.162886959353576,0.329940245945071,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0,0.258717367565509,0,0.532020700926821,0.178368817602071,0.658196082408484,0.608929898229199,0,0.42366414172764,0,0.16488625294148,0,0.0603129249281559,0,0.164140899745061,0,1.11255181206306,0,0.206386867963223,0.185194527369712,0,0,0.228778173206523,0,0,0,0,0.158167996790568,0.203319467126849,0.648032044930808,0.836353184057875,0.218362563746178,0.134864346384821,0.330613822901344,1.57053565190418,0.259229946583586,0,0,0.149516546043979,0.330916980914195,0.194451188344048,0.129159823477731,0.337912250981556,0.117357238645754,0.2604087696879,0.209718688851422,0,0.288030006257865,0.316011120628178,0,0.308132871494482,0.51968329191118,0.179026695667481,0.79472541912506,0.360586348559907,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0.0974578807397524,0.384847366561318,0.350630706544707,0.453460767230423,0.221985953374065,0.269141569828427,0,0.19318959403219,0.187682475451182,0.549454872801795,0,1.50471631210609,1.12950368523413,0.460325236507177,1.14579102687879,0.515559547031063,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0,0.51776031175182,0.103787347584177,0.798049746802062,0.512200817262403,0.486213434136588,0.419226325255965,0.183843508450014,0.44449345560323,0,0.64183841918363,0,0.760437899670719,0.188626341386076,0.468207537349412,0.448176066834085,0.402048282689293,1.42888107384922,0.115884325944855,0.578727661391115,0,0.441596760403192,0.342869252385415,0.354951612318675,0,0.726732083161643,0.846984423737976,0.676916863133412,0.73171189149109,0,0.407412341537585,1.68342681497322,0.237270036248348,0.197008964751127,0,0,0.385813221962283,0,0,0.214871054048298,0.382576664137687,0.220591419119515,0|short_description=p4@Tnik}} | ||
|EntrezGene=665113 | |||
|HGNC= | |||
|UniProt=E9Q617,P83510,E0CYV5,B9EKN8,B2RQ80,B2RY17 | |||
|association_with_transcript=0bp_to_ENSMUST00000092952,ENSMUST00000159236,ENSMUST00000160934,NM_001163007,NM_001163008,NM_001163009,NM_026910,uc008otx.2,uc008oty.1,uc012cob.1,uc012coc.1,uc012cod.1_5end | |||
|description=CAGE_peak_4_at_Tnik_5end | |||
|id=chr3:28162127..28162136,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.69e-10!33;CL:0000047!3.69e-10!33;CL:0000031!3.69e-10!33;CL:0000404!3.69e-10!33;CL:0000117!1.15e-09!23;CL:0000337!1.15e-09!23;CL:0000221!5.85e-08!44;CL:0000133!5.85e-08!44;CL:0002319!6.56e-08!43;CL:0000393!4.95e-07!39;CL:0000211!4.95e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.15e-19,33;CL:0000047,1.15e-19,33;CL:0000031,1.15e-19,33;CL:0000404,1.15e-19,33;CL:0000117,2.75e-19,23;CL:0000337,2.75e-19,23;CL:0000393,4.13e-16,39;CL:0000211,4.13e-16,39;CL:0002319,2.72e-14,43;CL:0000221,6.87e-14,44;CL:0000133,6.87e-14,44;CL:0002610,2.69e-10,3;CL:0002612,1.22e-09,3;CL:0002321,1.76e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.14e-18!73;UBERON:0005743!6.14e-18!73;UBERON:0000073!2.43e-17!75;UBERON:0001016!2.43e-17!75;UBERON:0004121!3.75e-15!102;UBERON:0000924!3.75e-15!102;UBERON:0006601!3.75e-15!102;UBERON:0001049!1.18e-13!52;UBERON:0005068!1.18e-13!52;UBERON:0006241!1.18e-13!52;UBERON:0007135!1.18e-13!52;UBERON:0000033!4.97e-13!63;UBERON:0000955!1.69e-12!50;UBERON:0006238!1.69e-12!50;UBERON:0002346!3.45e-12!71;UBERON:0003075!3.45e-12!71;UBERON:0007284!3.45e-12!71;UBERON:0002616!4.22e-12!49;UBERON:0002020!1.72e-10!34;UBERON:0003056!3.20e-10!49;UBERON:0007811!4.10e-09!86;UBERON:0003080!7.86e-09!40;UBERON:0002780!2.83e-08!39;UBERON:0001890!2.83e-08!39;UBERON:0006240!2.83e-08!39;UBERON:0002791!1.12e-07!29;UBERON:0003528!1.12e-07!29;UBERON:0001893!1.12e-07!29;UBERON:0000153!1.31e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.82e-22,73;UBERON:0001016,1.52e-21,75;UBERON:0003076,2.78e-18,12;UBERON:0003057,2.78e-18,12;UBERON:0000073,6.03e-18,54;UBERON:0002240,1.45e-16,6;UBERON:0005174,1.45e-16,6;UBERON:0001137,1.45e-16,6;UBERON:0004121,6.49e-16,95;UBERON:0000924,6.49e-16,95;UBERON:0006601,6.49e-16,95;UBERON:0001049,1.92e-14,52;UBERON:0005068,1.92e-14,52;UBERON:0006241,1.92e-14,52;UBERON:0007135,1.92e-14,52;UBERON:0001948,2.86e-14,5;UBERON:0002315,2.86e-14,5;UBERON:0002346,5.12e-11,64;UBERON:0003075,5.12e-11,64;UBERON:0007284,5.12e-11,64;UBERON:0004684,2.69e-10,3;UBERON:0002275,2.69e-10,3;UBERON:0002020,4.94e-10,34;UBERON:0002257,1.22e-09,3;UBERON:0010371,3.43e-09,73;UBERON:0002616,6.12e-07,46;UBERON:0000955,9.63e-07,47;UBERON:0006238,9.63e-07,47 | |||
|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.17008658030214,0,0,0.639969691173627,0,0.57423196411502,0.86152399231815,0.215471232685889,0.380046838912748,0,0.443461021310609,0,0,0,0,0.166234645358492,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,0,0,0.336093799142464,0.257259436035947,0,0,1.21389876515759,1.05798195854407,0.633831403506179,0,0,0,0,0,0.299600110518405,0.768436610643109,0.933206510776299,1.35005938331691,0.210324961351382,1.14260393761521,1.10434270475807,0.61245399607477,0.191690942036473,0.919218786610021,2.20231761998777,1.40456071893706,2.15049146558741,0.923204014111357,2.01272815925301,0,0.558365998002762,0,1.98637722109853,2.06240009831567,1.28134512719193,1.3047961207771,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.11418387971906,0,0,0,0.304465478312141,0,0.60289056221049,0,0.125666591329675,0,0.289198713839823,0,0,0.220841518460394,0,0,2.04946557908083,3.14170060220183,0.510914110417183,0,0,0,1.64769703345305,0.457500602818626,0.502617408451458,0.347648640384553,0.511430914660661,1.0389402227978,0.648965052271031,0.101839363850316,0.124406970610093,0,0.841767423545896,0.390361328888111,0,0.360124259610698,0.452114453507145,0.340182495756639,0.512454881139399,0.468508622798644,0.517406741478031,0,0,0.351902248327898,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0.720248245844059,0.473489471170421,0,0.154267112887378,0.232533944750408,0.268273401399619,0,0.493679549740441,0,0.405344047729279,0.292399974850665,0,0.268412837520744,0.841159794256509,0.514523061896422,0,0,0,0,0.515469845288373,0.80673409849337,1.11189021922435,0.190225626112559,0.949058123089023,0.329397909448022,0.754005626400808,0.994782360205754,0.38992817423824,0,0,0,0.189667900953082,0.114248512609729,0,0.407302655690628,0.193952487167626,0.210407459670956,0.126473074248515,0,0.31399745568275,0,0,0,0,0,0,0.241177159752417,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0,0.339490171550376,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0.630540576424764,0.221464689648775,0.159454768657487,0.491589944147214,0,0.144649058581512,0,0,0.491764273019036,0.275936746304732,1.12385412991454,0.703270119553219,0,0.252470927204373,0,0,0.646270193198397,0.716906393857656,0.445597348164788,1.13230612315533,1.21443210502468,1.75353514746787,0.395287777946524,0.642642632843614,0.141940085208269,0,0.162886959353576,0.329940245945071,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0,0.258717367565509,0,0.532020700926821,0.178368817602071,0.658196082408484,0.608929898229199,0,0.42366414172764,0,0.16488625294148,0,0.0603129249281559,0,0.164140899745061,0,1.11255181206306,0,0.206386867963223,0.185194527369712,0,0,0.228778173206523,0,0,0,0,0.158167996790568,0.203319467126849,0.648032044930808,0.836353184057875,0.218362563746178,0.134864346384821,0.330613822901344,1.57053565190418,0.259229946583586,0,0,0.149516546043979,0.330916980914195,0.194451188344048,0.129159823477731,0.337912250981556,0.117357238645754,0.2604087696879,0.209718688851422,0,0.288030006257865,0.316011120628178,0,0.308132871494482,0.51968329191118,0.179026695667481,0.79472541912506,0.360586348559907,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0.0974578807397524,0.384847366561318,0.350630706544707,0.453460767230423,0.221985953374065,0.269141569828427,0,0.19318959403219,0.187682475451182,0.549454872801795,0,1.50471631210609,1.12950368523413,0.460325236507177,1.14579102687879,0.515559547031063,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0,0.51776031175182,0.103787347584177,0.798049746802062,0.512200817262403,0.486213434136588,0.419226325255965,0.183843508450014,0.44449345560323,0,0.64183841918363,0,0.760437899670719,0.188626341386076,0.468207537349412,0.448176066834085,0.402048282689293,1.42888107384922,0.115884325944855,0.578727661391115,0,0.441596760403192,0.342869252385415,0.354951612318675,0,0.726732083161643,0.846984423737976,0.676916863133412,0.73171189149109,0,0.407412341537585,1.68342681497322,0.237270036248348,0.197008964751127,0,0,0.385813221962283,0,0,0.214871054048298,0.382576664137687,0.220591419119515,0 | |||
|short_description=p4@Tnik | |||
}} |
Revision as of 02:03, 14 September 2013
Short description: | p4@Tnik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tnik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000092952, ENSMUST00000159236, ENSMUST00000160934, NM_001163007, NM_001163008, NM_001163009, NM_026910, uc008otx.2, uc008oty.1, uc012cob.1, uc012coc.1, uc012cod.1_5end |
EntrezGene: | Tnik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.15e-19 | 33 |
neuronal stem cell | 1.15e-19 | 33 |
neuroblast | 1.15e-19 | 33 |
electrically signaling cell | 1.15e-19 | 33 |
CNS neuron (sensu Vertebrata) | 2.75e-19 | 23 |
neuroblast (sensu Vertebrata) | 2.75e-19 | 23 |
electrically responsive cell | 4.13e-16 | 39 |
electrically active cell | 4.13e-16 | 39 |
neural cell | 2.72e-14 | 43 |
ectodermal cell | 6.87e-14 | 44 |
neurectodermal cell | 6.87e-14 | 44 |
raphe nuclei neuron | 2.69e-10 | 3 |
neuron of the ventral spinal cord | 1.22e-09 | 3 |
embryonic cell | 1.76e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.82e-22 | 73 |
nervous system | 1.52e-21 | 75 |
posterior neural tube | 2.78e-18 | 12 |
chordal neural plate | 2.78e-18 | 12 |
regional part of nervous system | 6.03e-18 | 54 |
spinal cord | 1.45e-16 | 6 |
dorsal region element | 1.45e-16 | 6 |
dorsum | 1.45e-16 | 6 |
ectoderm-derived structure | 6.49e-16 | 95 |
ectoderm | 6.49e-16 | 95 |
presumptive ectoderm | 6.49e-16 | 95 |
neural tube | 1.92e-14 | 52 |
neural rod | 1.92e-14 | 52 |
future spinal cord | 1.92e-14 | 52 |
neural keel | 1.92e-14 | 52 |
regional part of spinal cord | 2.86e-14 | 5 |
gray matter of spinal cord | 2.86e-14 | 5 |
neurectoderm | 5.12e-11 | 64 |
neural plate | 5.12e-11 | 64 |
presumptive neural plate | 5.12e-11 | 64 |
raphe nuclei | 2.69e-10 | 3 |
reticular formation | 2.69e-10 | 3 |
gray matter | 4.94e-10 | 34 |
ventral horn of spinal cord | 1.22e-09 | 3 |
ecto-epithelium | 3.43e-09 | 73 |
regional part of brain | 6.12e-07 | 46 |
brain | 9.63e-07 | 47 |
future brain | 9.63e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.