FFCP PHASE1:Mm9::chr2:22477994..22478007,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14417|HGNC=|MCL_coexpression_id=745|UniProt=P48320,Q548L4,Q3URJ3|association_with_transcript=147bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end|description=CAGE_peak_4_at_Gad2_5end|id=chr2:22477994..22478007,+|ontology_enrichment_celltype=CL:0000117!1.86e-21!23;CL:0000337!1.86e-21!23;CL:0000540!3.56e-13!33;CL:0000047!3.56e-13!33;CL:0000031!3.56e-13!33;CL:0000404!3.56e-13!33;CL:0000393!7.61e-10!39;CL:0000211!7.61e-10!39;CL:0002319!1.16e-09!43;CL:0000221!3.02e-09!44;CL:0000133!3.02e-09!44;CL:0000055!3.69e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.14e-28,23;CL:0000337,7.14e-28,23;CL:0000540,3.85e-17,33;CL:0000047,3.85e-17,33;CL:0000031,3.85e-17,33;CL:0000404,3.85e-17,33;CL:0000393,2.14e-13,39;CL:0000211,2.14e-13,39;CL:0002319,1.67e-11,43;CL:0000221,4.37e-11,44;CL:0000133,4.37e-11,44;CL:0002609,5.87e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.97e-31!63;UBERON:0001049!7.13e-31!52;UBERON:0005068!7.13e-31!52;UBERON:0006241!7.13e-31!52;UBERON:0007135!7.13e-31!52;UBERON:0000955!4.51e-30!50;UBERON:0006238!4.51e-30!50;UBERON:0002616!6.00e-29!49;UBERON:0001017!3.40e-28!73;UBERON:0005743!3.40e-28!73;UBERON:0000073!5.64e-28!75;UBERON:0001016!5.64e-28!75;UBERON:0002346!8.46e-28!71;UBERON:0003075!8.46e-28!71;UBERON:0007284!8.46e-28!71;UBERON:0002020!1.89e-26!34;UBERON:0003056!5.39e-26!49;UBERON:0004121!2.91e-23!102;UBERON:0000924!2.91e-23!102;UBERON:0006601!2.91e-23!102;UBERON:0003080!5.84e-23!40;UBERON:0002791!2.48e-22!29;UBERON:0003528!2.48e-22!29;UBERON:0001893!2.48e-22!29;UBERON:0002780!6.29e-22!39;UBERON:0001890!6.29e-22!39;UBERON:0006240!6.29e-22!39;UBERON:0007811!6.79e-18!86;UBERON:0000153!6.77e-15!94;UBERON:0000956!1.48e-14!21;UBERON:0001869!1.48e-14!21;UBERON:0000203!1.48e-14!21;UBERON:0002619!6.98e-12!17;UBERON:0002021!1.82e-09!10;UBERON:0000411!1.82e-09!10;UBERON:0001950!1.82e-09!10;UBERON:0002420!4.36e-09!8;UBERON:0007245!4.36e-09!8;UBERON:0010009!4.36e-09!8;UBERON:0010011!4.36e-09!8;UBERON:0000454!4.36e-09!8;UBERON:0003076!3.15e-08!12;UBERON:0003057!3.15e-08!12;UBERON:0002298!8.49e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.57e-39,54;UBERON:0002346,2.33e-36,64;UBERON:0003075,2.33e-36,64;UBERON:0007284,2.33e-36,64;UBERON:0001049,1.19e-35,52;UBERON:0005068,1.19e-35,52;UBERON:0006241,1.19e-35,52;UBERON:0007135,1.19e-35,52;UBERON:0002020,6.47e-35,34;UBERON:0001017,1.01e-33,73;UBERON:0001016,1.97e-32,75;UBERON:0000955,1.52e-30,47;UBERON:0006238,1.52e-30,47;UBERON:0004121,2.86e-30,95;UBERON:0000924,2.86e-30,95;UBERON:0006601,2.86e-30,95;UBERON:0010371,3.99e-30,73;UBERON:0003056,1.35e-29,49;UBERON:0003528,1.89e-29,29;UBERON:0002791,1.89e-29,29;UBERON:0001893,1.89e-29,29;UBERON:0002616,3.71e-29,46;UBERON:0003080,1.06e-26,40;UBERON:0002780,2.22e-25,39;UBERON:0001890,2.22e-25,39;UBERON:0006240,2.22e-25,39;UBERON:0010314,5.13e-21,92;UBERON:0000956,4.04e-19,21;UBERON:0001869,4.04e-19,21;UBERON:0000203,4.04e-19,21;UBERON:0002619,1.40e-15,17;UBERON:0002021,5.22e-12,10;UBERON:0000411,5.22e-12,10;UBERON:0001950,5.22e-12,10;UBERON:0002420,1.66e-11,8;UBERON:0007245,1.66e-11,8;UBERON:0010009,1.66e-11,8;UBERON:0010011,1.66e-11,8;UBERON:0000454,1.66e-11,8;UBERON:0000025,1.28e-09,114;UBERON:0004111,4.58e-09,122;UBERON:0003076,4.72e-09,12;UBERON:0003057,4.72e-09,12;UBERON:0000369,5.29e-08,5;UBERON:0002435,5.29e-08,5;UBERON:0000204,5.29e-08,5;UBERON:0010082,5.29e-08,5;UBERON:0002240,2.19e-07,6;UBERON:0005174,2.19e-07,6;UBERON:0001137,2.19e-07,6|phase1_expression=0.160148847104794,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0,0,0,0,0,0,0,0,0,5.66486090406874,6.87688273053643,7.60597684207415,0,0,0,0,0,0,0,1.34796496001021,2.43010688997043,2.10324961351382,3.71346279724945,4.19650227808066,23.2732518508413,26.8367318851062,21.1420320920305,8.8092704799511,8.55505165170758,13.3637683932932,8.04506355154182,7.04454855738554,9.37644067002168,8.65467296904281,5.06486349028512,8.55670187550137,5.59794312399969,5.12538050876771,6.33758115806022,0,0.377857800533928,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0.608930956624282,0,0,0,0,0,0,0,0,0,0,0,5.27005434620785,3.35114730901528,0,0,0,0,12.1330417917906,14.1825186873774,11.9371634507221,7.64827008846016,6.13717097592793,11.2205544062162,12.4925772562173,0,0,0,0,0,1.60931473103431,3.78130472591233,2.26057226753573,4.49040894398764,3.45907044769094,1.87403449119458,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.51898840548794,2.98423375899925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81651769963376,6.79827782234778,0,0,0,0,0,0,0,0,0,0,0,14.1381379225595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.540183282093931,0,0,0,0.178368817602071,0,0.304464949114599,0,0,0,0,0,0,0,0,0,4.07935664423121,0,0,0,0,0,0,0,0.139951452323658,0,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| ||
|EntrezGene=14417 | |||
|HGNC= | |||
|MCL_coexpression_id=745 | |||
|UniProt=P48320,Q548L4,Q3URJ3 | |||
|association_with_transcript=147bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end | |||
|description=CAGE_peak_4_at_Gad2_5end | |||
|id=chr2:22477994..22478007,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.86e-21!23;CL:0000337!1.86e-21!23;CL:0000540!3.56e-13!33;CL:0000047!3.56e-13!33;CL:0000031!3.56e-13!33;CL:0000404!3.56e-13!33;CL:0000393!7.61e-10!39;CL:0000211!7.61e-10!39;CL:0002319!1.16e-09!43;CL:0000221!3.02e-09!44;CL:0000133!3.02e-09!44;CL:0000055!3.69e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.14e-28,23;CL:0000337,7.14e-28,23;CL:0000540,3.85e-17,33;CL:0000047,3.85e-17,33;CL:0000031,3.85e-17,33;CL:0000404,3.85e-17,33;CL:0000393,2.14e-13,39;CL:0000211,2.14e-13,39;CL:0002319,1.67e-11,43;CL:0000221,4.37e-11,44;CL:0000133,4.37e-11,44;CL:0002609,5.87e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.97e-31!63;UBERON:0001049!7.13e-31!52;UBERON:0005068!7.13e-31!52;UBERON:0006241!7.13e-31!52;UBERON:0007135!7.13e-31!52;UBERON:0000955!4.51e-30!50;UBERON:0006238!4.51e-30!50;UBERON:0002616!6.00e-29!49;UBERON:0001017!3.40e-28!73;UBERON:0005743!3.40e-28!73;UBERON:0000073!5.64e-28!75;UBERON:0001016!5.64e-28!75;UBERON:0002346!8.46e-28!71;UBERON:0003075!8.46e-28!71;UBERON:0007284!8.46e-28!71;UBERON:0002020!1.89e-26!34;UBERON:0003056!5.39e-26!49;UBERON:0004121!2.91e-23!102;UBERON:0000924!2.91e-23!102;UBERON:0006601!2.91e-23!102;UBERON:0003080!5.84e-23!40;UBERON:0002791!2.48e-22!29;UBERON:0003528!2.48e-22!29;UBERON:0001893!2.48e-22!29;UBERON:0002780!6.29e-22!39;UBERON:0001890!6.29e-22!39;UBERON:0006240!6.29e-22!39;UBERON:0007811!6.79e-18!86;UBERON:0000153!6.77e-15!94;UBERON:0000956!1.48e-14!21;UBERON:0001869!1.48e-14!21;UBERON:0000203!1.48e-14!21;UBERON:0002619!6.98e-12!17;UBERON:0002021!1.82e-09!10;UBERON:0000411!1.82e-09!10;UBERON:0001950!1.82e-09!10;UBERON:0002420!4.36e-09!8;UBERON:0007245!4.36e-09!8;UBERON:0010009!4.36e-09!8;UBERON:0010011!4.36e-09!8;UBERON:0000454!4.36e-09!8;UBERON:0003076!3.15e-08!12;UBERON:0003057!3.15e-08!12;UBERON:0002298!8.49e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.57e-39,54;UBERON:0002346,2.33e-36,64;UBERON:0003075,2.33e-36,64;UBERON:0007284,2.33e-36,64;UBERON:0001049,1.19e-35,52;UBERON:0005068,1.19e-35,52;UBERON:0006241,1.19e-35,52;UBERON:0007135,1.19e-35,52;UBERON:0002020,6.47e-35,34;UBERON:0001017,1.01e-33,73;UBERON:0001016,1.97e-32,75;UBERON:0000955,1.52e-30,47;UBERON:0006238,1.52e-30,47;UBERON:0004121,2.86e-30,95;UBERON:0000924,2.86e-30,95;UBERON:0006601,2.86e-30,95;UBERON:0010371,3.99e-30,73;UBERON:0003056,1.35e-29,49;UBERON:0003528,1.89e-29,29;UBERON:0002791,1.89e-29,29;UBERON:0001893,1.89e-29,29;UBERON:0002616,3.71e-29,46;UBERON:0003080,1.06e-26,40;UBERON:0002780,2.22e-25,39;UBERON:0001890,2.22e-25,39;UBERON:0006240,2.22e-25,39;UBERON:0010314,5.13e-21,92;UBERON:0000956,4.04e-19,21;UBERON:0001869,4.04e-19,21;UBERON:0000203,4.04e-19,21;UBERON:0002619,1.40e-15,17;UBERON:0002021,5.22e-12,10;UBERON:0000411,5.22e-12,10;UBERON:0001950,5.22e-12,10;UBERON:0002420,1.66e-11,8;UBERON:0007245,1.66e-11,8;UBERON:0010009,1.66e-11,8;UBERON:0010011,1.66e-11,8;UBERON:0000454,1.66e-11,8;UBERON:0000025,1.28e-09,114;UBERON:0004111,4.58e-09,122;UBERON:0003076,4.72e-09,12;UBERON:0003057,4.72e-09,12;UBERON:0000369,5.29e-08,5;UBERON:0002435,5.29e-08,5;UBERON:0000204,5.29e-08,5;UBERON:0010082,5.29e-08,5;UBERON:0002240,2.19e-07,6;UBERON:0005174,2.19e-07,6;UBERON:0001137,2.19e-07,6 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78590909317247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0,0,0,0,0,0,0,0,0,0,5.66486090406874,6.87688273053643,7.60597684207415,0,0,0,0,0,0,0,1.34796496001021,2.43010688997043,2.10324961351382,3.71346279724945,4.19650227808066,23.2732518508413,26.8367318851062,21.1420320920305,8.8092704799511,8.55505165170758,13.3637683932932,8.04506355154182,7.04454855738554,9.37644067002168,8.65467296904281,5.06486349028512,8.55670187550137,5.59794312399969,5.12538050876771,6.33758115806022,0,0.377857800533928,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0.608930956624282,0,0,0,0,0,0,0,0,0,0,0,5.27005434620785,3.35114730901528,0,0,0,0,12.1330417917906,14.1825186873774,11.9371634507221,7.64827008846016,6.13717097592793,11.2205544062162,12.4925772562173,0,0,0,0,0,1.60931473103431,3.78130472591233,2.26057226753573,4.49040894398764,3.45907044769094,1.87403449119458,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.51898840548794,2.98423375899925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81651769963376,6.79827782234778,0,0,0,0,0,0,0,0,0,0,0,14.1381379225595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.540183282093931,0,0,0,0.178368817602071,0,0.304464949114599,0,0,0,0,0,0,0,0,0,4.07935664423121,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.5424468089548,6.7770221114048,7.82552902062201,8.02053718815155,6.35856774671644,6.85082519770642,5.2877572817279,4.05013500139084,4.95353323546643,3.17199686288943,4.65984280576638,0.31136204275253,2.79317411380722,1.87806966329548,1.21553358534147,0.419226325255965,1.47074806760011,0.888986911206461,1.64828045791115,0.64183841918363,1.26348605881899,0.50695859978048,1.13175804831646,0.655490552289177,1.21647789569252,1.43588672389033,0.952587382566147,1.15884325944855,0.38581844092741,0,1.17759136107518,1.02860775715625,0.532427418478012,0.715308569841963,1.16277133305863,0.282328141245992,0.676916863133412,1.46342378298218,0.263069711437843,0.679020569229309,0,0.474540072496697,0.985044823755635,2.04615521584845,0.77468420592983,0.192906610981141,2.99772693525535,1.40358965067245,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p4@Gad2 | |||
}} |
Revision as of 23:21, 13 September 2013
Short description: | p4@Gad2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gad2_5end |
Coexpression cluster: | MCL_coexpression_mm9:745 |
Association with transcript: | 147bp_to_NM_008078, uc008ini.1, uc008inj.1, uc008ink.1_5end |
EntrezGene: | Gad2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.14e-28 | 23 |
neuroblast (sensu Vertebrata) | 7.14e-28 | 23 |
neuron | 3.85e-17 | 33 |
neuronal stem cell | 3.85e-17 | 33 |
neuroblast | 3.85e-17 | 33 |
electrically signaling cell | 3.85e-17 | 33 |
electrically responsive cell | 2.14e-13 | 39 |
electrically active cell | 2.14e-13 | 39 |
neural cell | 1.67e-11 | 43 |
ectodermal cell | 4.37e-11 | 44 |
neurectodermal cell | 4.37e-11 | 44 |
neuron of cerebral cortex | 5.87e-08 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.