FFCP PHASE1:Hg19::chr7:103630356..103630384,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5649|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9957|TSSclassifier=S|UniProt=P78509,F8WF74|association_with_transcript=-393bp_to_ENST00000343529,ENST00000424685,ENST00000424828,ENST00000428762,ENST00000448171,NM_005045,NM_173054,uc003vca.2,uc010liz.2_5end|coexpression_cluster_id=C11|description=CAGE_peak_7_at_RELN_5end|id=chr7:103630356..103630384,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000222;3.16e-29;1!CL:0000346;1.09e-10;3!CL:1000428;1.09e-10;3!CL:0002559;6.39e-07;5|ontology_enrichment_celltype_v019_2=CL:0000346,9.90e-11,3;CL:1000428,9.90e-11,3;CL:0002559,6.04e-07,5|ontology_enrichment_development_v019=UBERON:0006215;2.28e-85;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.72e-17!57;UBERON:0005068!2.72e-17!57;UBERON:0006241!2.72e-17!57;UBERON:0007135!2.72e-17!57;UBERON:0003075!2.55e-15!86;UBERON:0007284!2.55e-15!86;UBERON:0005743!5.94e-15!86;UBERON:0002616!1.20e-14!59;UBERON:0000955!1.45e-14!69;UBERON:0006238!1.45e-14!69;UBERON:0002346!2.22e-14!90;UBERON:0001017!2.25e-14!82;UBERON:0000073!2.47e-14!94;UBERON:0001016!2.47e-14!94;UBERON:0003076!2.64e-13!15;UBERON:0003057!2.64e-13!15;UBERON:0004733!5.73e-13!12;UBERON:0002028!5.73e-13!12;UBERON:0007277!5.73e-13!12;UBERON:0004732!6.92e-12!13;UBERON:0001950!1.82e-10!20;UBERON:0004121!2.70e-10!169;UBERON:0007023!4.68e-10!115;UBERON:0000924!6.78e-10!173;UBERON:0006601!6.78e-10!173;UBERON:0002037!1.27e-09!6;UBERON:0006215!1.27e-09!6;UBERON:0002619!2.04e-09!22;UBERON:0002680!2.13e-09!9;UBERON:0001895!2.13e-09!9;UBERON:0010092!2.13e-09!9;UBERON:0000033!9.57e-09!123;UBERON:0001893!1.66e-08!34;UBERON:0002780!3.12e-08!41;UBERON:0001890!3.12e-08!41;UBERON:0006240!3.12e-08!41;UBERON:0000956!3.81e-08!25;UBERON:0000203!3.81e-08!25;UBERON:0000025!3.91e-08!194;UBERON:0000153!4.29e-08!129;UBERON:0007811!4.29e-08!129;UBERON:0003056!5.19e-08!61;UBERON:0003080!5.52e-08!42;UBERON:0004111!8.98e-08!241;UBERON:0000477!1.07e-07!286;UBERON:0001869!1.71e-07!32;UBERON:0002791!2.74e-07!33;UBERON:0002020!5.00e-07!34;UBERON:0003528!5.00e-07!34|ontology_enrichment_uberon_v019=UBERON:0002037;3.16e-43;6!UBERON:0002680;3.84e-29;9!UBERON:0001895;3.84e-29;9!UBERON:0004733;4.42e-22;12!UBERON:0002028;4.42e-22;12!UBERON:0004732;1.90e-20;13!UBERON:0001905;1.78e-15;2!UBERON:0002757;1.78e-15;2!UBERON:0010134;1.78e-15;2!UBERON:0005408;1.78e-15;2!UBERON:0001899;1.78e-15;2!UBERON:0000412;1.09e-10;3!UBERON:0001992;1.09e-10;3!UBERON:0003296;2.11e-08;4!UBERON:0010133;2.11e-08;4!UBERON:0002784;2.11e-08;4!UBERON:0000073;5.52e-08;53!UBERON:0002616;5.52e-08;53!UBERON:0002073;6.39e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.16e-43,6;UBERON:0006215,3.16e-43,6;UBERON:0002680,3.84e-29,9;UBERON:0001895,3.84e-29,9;UBERON:0010092,3.84e-29,9;UBERON:0004733,4.42e-22,12;UBERON:0002028,4.42e-22,12;UBERON:0007277,4.42e-22,12;UBERON:0004732,1.90e-20,13;UBERON:0003076,7.82e-18,15;UBERON:0003057,7.82e-18,15;UBERON:0001905,1.78e-15,2;UBERON:0002757,1.78e-15,2;UBERON:0010134,1.78e-15,2;UBERON:0005408,1.78e-15,2;UBERON:0001899,1.78e-15,2;UBERON:0000073,1.76e-13,53;UBERON:0002616,1.76e-13,53;UBERON:0001049,8.65e-13,56;UBERON:0005068,8.65e-13,56;UBERON:0006241,8.65e-13,56;UBERON:0007135,8.65e-13,56;UBERON:0000412,9.90e-11,3;UBERON:0001992,9.90e-11,3;UBERON:0000955,1.78e-10,68;UBERON:0006238,1.78e-10,68;UBERON:0010371,5.90e-10,104;UBERON:0001017,7.02e-09,81;UBERON:0003075,7.02e-09,82;UBERON:0007284,7.02e-09,82;UBERON:0002346,1.75e-08,86;UBERON:0003296,2.11e-08,4;UBERON:0010133,2.11e-08,4;UBERON:0002784,2.11e-08,4;UBERON:0001016,4.90e-08,89;UBERON:0010314,6.84e-08,132;UBERON:0002073,6.04e-07,5;UBERON:0005086,6.04e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.263504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.976248230192678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.577465791044295,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5649 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9957 | |||
|TSSclassifier=S | |||
|UniProt=P78509,F8WF74 | |||
|association_with_transcript=-393bp_to_ENST00000343529,ENST00000424685,ENST00000424828,ENST00000428762,ENST00000448171,NM_005045,NM_173054,uc003vca.2,uc010liz.2_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_7_at_RELN_5end | |||
|id=chr7:103630356..103630384,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000222;3.16e-29;1!CL:0000346;1.09e-10;3!CL:1000428;1.09e-10;3!CL:0002559;6.39e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,9.90e-11,3;CL:1000428,9.90e-11,3;CL:0002559,6.04e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.28e-85;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.72e-17!57;UBERON:0005068!2.72e-17!57;UBERON:0006241!2.72e-17!57;UBERON:0007135!2.72e-17!57;UBERON:0003075!2.55e-15!86;UBERON:0007284!2.55e-15!86;UBERON:0005743!5.94e-15!86;UBERON:0002616!1.20e-14!59;UBERON:0000955!1.45e-14!69;UBERON:0006238!1.45e-14!69;UBERON:0002346!2.22e-14!90;UBERON:0001017!2.25e-14!82;UBERON:0000073!2.47e-14!94;UBERON:0001016!2.47e-14!94;UBERON:0003076!2.64e-13!15;UBERON:0003057!2.64e-13!15;UBERON:0004733!5.73e-13!12;UBERON:0002028!5.73e-13!12;UBERON:0007277!5.73e-13!12;UBERON:0004732!6.92e-12!13;UBERON:0001950!1.82e-10!20;UBERON:0004121!2.70e-10!169;UBERON:0007023!4.68e-10!115;UBERON:0000924!6.78e-10!173;UBERON:0006601!6.78e-10!173;UBERON:0002037!1.27e-09!6;UBERON:0006215!1.27e-09!6;UBERON:0002619!2.04e-09!22;UBERON:0002680!2.13e-09!9;UBERON:0001895!2.13e-09!9;UBERON:0010092!2.13e-09!9;UBERON:0000033!9.57e-09!123;UBERON:0001893!1.66e-08!34;UBERON:0002780!3.12e-08!41;UBERON:0001890!3.12e-08!41;UBERON:0006240!3.12e-08!41;UBERON:0000956!3.81e-08!25;UBERON:0000203!3.81e-08!25;UBERON:0000025!3.91e-08!194;UBERON:0000153!4.29e-08!129;UBERON:0007811!4.29e-08!129;UBERON:0003056!5.19e-08!61;UBERON:0003080!5.52e-08!42;UBERON:0004111!8.98e-08!241;UBERON:0000477!1.07e-07!286;UBERON:0001869!1.71e-07!32;UBERON:0002791!2.74e-07!33;UBERON:0002020!5.00e-07!34;UBERON:0003528!5.00e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;3.16e-43;6!UBERON:0002680;3.84e-29;9!UBERON:0001895;3.84e-29;9!UBERON:0004733;4.42e-22;12!UBERON:0002028;4.42e-22;12!UBERON:0004732;1.90e-20;13!UBERON:0001905;1.78e-15;2!UBERON:0002757;1.78e-15;2!UBERON:0010134;1.78e-15;2!UBERON:0005408;1.78e-15;2!UBERON:0001899;1.78e-15;2!UBERON:0000412;1.09e-10;3!UBERON:0001992;1.09e-10;3!UBERON:0003296;2.11e-08;4!UBERON:0010133;2.11e-08;4!UBERON:0002784;2.11e-08;4!UBERON:0000073;5.52e-08;53!UBERON:0002616;5.52e-08;53!UBERON:0002073;6.39e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.16e-43,6;UBERON:0006215,3.16e-43,6;UBERON:0002680,3.84e-29,9;UBERON:0001895,3.84e-29,9;UBERON:0010092,3.84e-29,9;UBERON:0004733,4.42e-22,12;UBERON:0002028,4.42e-22,12;UBERON:0007277,4.42e-22,12;UBERON:0004732,1.90e-20,13;UBERON:0003076,7.82e-18,15;UBERON:0003057,7.82e-18,15;UBERON:0001905,1.78e-15,2;UBERON:0002757,1.78e-15,2;UBERON:0010134,1.78e-15,2;UBERON:0005408,1.78e-15,2;UBERON:0001899,1.78e-15,2;UBERON:0000073,1.76e-13,53;UBERON:0002616,1.76e-13,53;UBERON:0001049,8.65e-13,56;UBERON:0005068,8.65e-13,56;UBERON:0006241,8.65e-13,56;UBERON:0007135,8.65e-13,56;UBERON:0000412,9.90e-11,3;UBERON:0001992,9.90e-11,3;UBERON:0000955,1.78e-10,68;UBERON:0006238,1.78e-10,68;UBERON:0010371,5.90e-10,104;UBERON:0001017,7.02e-09,81;UBERON:0003075,7.02e-09,82;UBERON:0007284,7.02e-09,82;UBERON:0002346,1.75e-08,86;UBERON:0003296,2.11e-08,4;UBERON:0010133,2.11e-08,4;UBERON:0002784,2.11e-08,4;UBERON:0001016,4.90e-08,89;UBERON:0010314,6.84e-08,132;UBERON:0002073,6.04e-07,5;UBERON:0005086,6.04e-07,5 | |||
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|short_description=p7@RELN | |||
}} |
Revision as of 22:29, 13 September 2013
Short description: | p7@RELN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_RELN_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -393bp_to_ENST00000343529, ENST00000424685, ENST00000424828, ENST00000428762, ENST00000448171, NM_005045, NM_173054, uc003vca.2, uc010liz.2_5end |
EntrezGene: | RELN |
HGNC: | 9957 |
UniProt: | P78509F8WF74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 9.90e-11 | 3 |
stem cell of epidermis | 9.90e-11 | 3 |
hair follicle cell | 6.04e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.