FFCP PHASE1:Hg19::chr6:56819494..56819509,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100652766,667|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1090|TSSclassifier=S|UniProt=Q5T0V7|association_with_transcript=-68bp_to_ENST00000449297_5end|coexpression_cluster_id=C2866|description=CAGE_peak_28_at_DST_5end|id=chr6:56819494..56819509,-|ontology_enrichment_celltype=CL:0000055!6.44e-15!180;CL:0000057!5.71e-14!75;CL:0002620!3.46e-13!23|ontology_enrichment_celltype_v019=CL:0002620;6.80e-23;23|ontology_enrichment_celltype_v019_2=CL:0002620,4.14e-23,23;CL:0000057,8.52e-17,76;CL:0000134,8.28e-07,354|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!8.10e-07!14|ontology_enrichment_disease_v019=DOID:17;1.70e-13;5!DOID:450;1.70e-13;5!DOID:66;1.70e-13;5!DOID:423;1.70e-13;5!DOID:0080000;1.70e-13;5!DOID:11722;1.70e-13;5!DOID:2394;4.81e-08;14|ontology_enrichment_disease_v019_2=DOID:17,1.66e-13,5;DOID:450,1.66e-13,5;DOID:66,1.66e-13,5;DOID:423,1.66e-13,5;DOID:0080000,1.66e-13,5;DOID:11722,1.66e-13,5;DOID:2394,5.95e-08,14|ontology_enrichment_uberon=UBERON:0001049!4.91e-13!57;UBERON:0005068!4.91e-13!57;UBERON:0006241!4.91e-13!57;UBERON:0007135!4.91e-13!57;UBERON:0001017!7.50e-13!82;UBERON:0000955!3.50e-12!69;UBERON:0006238!3.50e-12!69;UBERON:0005743!6.68e-12!86;UBERON:0000073!1.85e-11!94;UBERON:0001016!1.85e-11!94;UBERON:0002616!6.03e-11!59;UBERON:0003075!8.45e-10!86;UBERON:0007284!8.45e-10!86;UBERON:0000033!2.28e-09!123;UBERON:0000475!2.38e-09!365;UBERON:0002780!4.08e-09!41;UBERON:0001890!4.08e-09!41;UBERON:0006240!4.08e-09!41;UBERON:0002346!5.79e-09!90;UBERON:0002020!6.72e-09!34;UBERON:0003528!6.72e-09!34;UBERON:0003080!1.23e-08!42;UBERON:0001893!2.16e-08!34;UBERON:0000153!2.75e-08!129;UBERON:0007811!2.75e-08!129;UBERON:0002791!3.25e-08!33;UBERON:0001869!7.08e-08!32|ontology_enrichment_uberon_v019=UBERON:0002097;1.71e-09;41!UBERON:0002118;1.48e-08;5!UBERON:0002199;3.34e-07;46!UBERON:0002416;3.34e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0002097,5.30e-13,41;UBERON:0002199,3.80e-11,46;UBERON:0002416,3.80e-11,46;UBERON:0002118,3.60e-08,5;UBERON:0002384,5.70e-07,371|phase1_expression=0.363356758541113,0.642301571672949,0.704772020479856,0,0.893922188854576,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0.74259811776028,0,0,0.602694528023977,0,0,0.369363174230364,0,0.626909442956176,0.286235987131057,0.821246550437305,0.125542639594803,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.579386075843295,1.5905718941022,0.973269740605272,0.0945348171640679,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0.12663051166458,5.03154887090231,3.72887606973458,0.354668382198357,0,0,0.24666754841716,0.622422070799533,0.134710672069688,0.163461903113459,0,0.576175924479999,0,0,0,0.747243402759005,1.40921398372518,0.809364721840658,1.26405726032024,0.408308342509787,0.245668634623536,1.23990937410919,0,0.494533858557114,0,0.718618141816238,0.168336113954066,0.875829639103749,1.38532057742091,1.31693286264251,1.5324389789951,0.150238058906597,0.340296549480063,4.12596162084383,1.49490172172997,1.48352330811693,4.50136644126603,1.23663035086127,5.15281080091258,1.8611685633159,6.75105328965065,1.26668106709558,6.05841058185875,1.38074847963449,0.969876340912871,4.61512470271599,1.71278566986988,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,1.92972281457866,0,0.464367928031979,0,0.236613600079688,0,0,0,0.217879444092406,0.474541238222193,0,0.196221465125346,0.38474715694639,0,1.40241773803446,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0,0.646358578788889,0,0.845302752556,1.59562869950922,0,0.514414748524284,0,0,0.428933980974443,0,0,0.325736184293735,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0.239624855491583,0,0,0.434343920002738,0.61642896765115,0.179060963239896,0,0,0,0,1.27047312111232,1.30139853857622,0,0,0,0,0,0,0.49076596687656,0,0.542530047399471,0.831883446123229,1.42743191037729,0.315404830067869,1.17141414992713,0,0,0,0.664225598535437,0.553107505625109,1.91143951829782,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,3.83654933220156,0.280660094433074,0.768834895534206,0,0.160853921143607,0,0,0.532685175939381,1.47828880824856,0,1.04589340613963,0,0,0,0.229628896329213,0.364182336013434,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0,1.73981983154852,1.23764249880882,0,0,0,0.096670718292122,0.770243085573222,0.460511024178389,0.275673144969061,0.644521469209642,0.580066775656914,0.340906509664404,0.356128142586949,0,0,0.127612712494584,0,0,4.40737285562896,0,0,0,0.869932992075073,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100652766,667 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1090 | |||
|TSSclassifier=S | |||
|UniProt=Q5T0V7 | |||
|association_with_transcript=-68bp_to_ENST00000449297_5end | |||
|coexpression_cluster_id=C2866 | |||
|description=CAGE_peak_28_at_DST_5end | |||
|id=chr6:56819494..56819509,- | |||
|ontology_enrichment_celltype=CL:0000055!6.44e-15!180;CL:0000057!5.71e-14!75;CL:0002620!3.46e-13!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.80e-23;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.14e-23,23;CL:0000057,8.52e-17,76;CL:0000134,8.28e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!8.10e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;1.70e-13;5!DOID:450;1.70e-13;5!DOID:66;1.70e-13;5!DOID:423;1.70e-13;5!DOID:0080000;1.70e-13;5!DOID:11722;1.70e-13;5!DOID:2394;4.81e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.66e-13,5;DOID:450,1.66e-13,5;DOID:66,1.66e-13,5;DOID:423,1.66e-13,5;DOID:0080000,1.66e-13,5;DOID:11722,1.66e-13,5;DOID:2394,5.95e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.91e-13!57;UBERON:0005068!4.91e-13!57;UBERON:0006241!4.91e-13!57;UBERON:0007135!4.91e-13!57;UBERON:0001017!7.50e-13!82;UBERON:0000955!3.50e-12!69;UBERON:0006238!3.50e-12!69;UBERON:0005743!6.68e-12!86;UBERON:0000073!1.85e-11!94;UBERON:0001016!1.85e-11!94;UBERON:0002616!6.03e-11!59;UBERON:0003075!8.45e-10!86;UBERON:0007284!8.45e-10!86;UBERON:0000033!2.28e-09!123;UBERON:0000475!2.38e-09!365;UBERON:0002780!4.08e-09!41;UBERON:0001890!4.08e-09!41;UBERON:0006240!4.08e-09!41;UBERON:0002346!5.79e-09!90;UBERON:0002020!6.72e-09!34;UBERON:0003528!6.72e-09!34;UBERON:0003080!1.23e-08!42;UBERON:0001893!2.16e-08!34;UBERON:0000153!2.75e-08!129;UBERON:0007811!2.75e-08!129;UBERON:0002791!3.25e-08!33;UBERON:0001869!7.08e-08!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.71e-09;41!UBERON:0002118;1.48e-08;5!UBERON:0002199;3.34e-07;46!UBERON:0002416;3.34e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,5.30e-13,41;UBERON:0002199,3.80e-11,46;UBERON:0002416,3.80e-11,46;UBERON:0002118,3.60e-08,5;UBERON:0002384,5.70e-07,371 | |||
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| |||
|short_description=p28@DST | |||
}} |
Revision as of 21:31, 13 September 2013
Short description: | p28@DST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_28_at_DST_5end |
Coexpression cluster: | C2866_Fibroblast_Preadipocyte_rhabdomyosarcoma_Myoblast_mesenchymal_Smooth_liposarcoma |
Association with transcript: | -68bp_to_ENST00000449297_5end |
EntrezGene: | 100652766,667 |
HGNC: | 1090 |
UniProt: | Q5T0V7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.14e-23 | 23 |
fibroblast | 8.52e-17 | 76 |
mesenchymal cell | 8.28e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
skin of body | 5.30e-13 | 41 |
integument | 3.80e-11 | 46 |
integumental system | 3.80e-11 | 46 |
right ovary | 3.60e-08 | 5 |
connective tissue | 5.70e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.66e-13 | 5 |
myotonic disease | 1.66e-13 | 5 |
muscle tissue disease | 1.66e-13 | 5 |
myopathy | 1.66e-13 | 5 |
muscular disease | 1.66e-13 | 5 |
myotonic dystrophy | 1.66e-13 | 5 |
ovarian cancer | 5.95e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.