FFCP PHASE1:Hg19::chr6:35480705..35480718,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7287|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12423|TSSclassifier=S|UniProt=O00294|association_with_transcript=0bp_to_ENST00000229771_5end|coexpression_cluster_id=C535|description=CAGE_peak_4_at_TULP1_5end|id=chr6:35480705..35480718,-|ontology_enrichment_celltype=CL:0002322!1.15e-41!5;CL:0002586!1.46e-25!3;CL:0000147!6.16e-21!14;CL:0000149!2.44e-19!4;CL:0000325!1.15e-09!39;CL:0000148!4.76e-08!10;CL:0000541!4.76e-08!10;CL:0000133!9.68e-08!59;CL:0000075!1.79e-07!27;CL:0000710!8.78e-07!20|ontology_enrichment_celltype_v019=CL:0000243;1.02e-07;15!CL:0000125;1.02e-07;15!CL:0000095;5.34e-07;17|ontology_enrichment_celltype_v019_2=CL:0000243,1.02e-07,15;CL:0000125,1.02e-07,15;CL:0000030,1.02e-07,15;CL:0000339,1.02e-07,15;CL:0000095,5.34e-07,17;CL:0000123,5.34e-07,17|ontology_enrichment_development_v019=UBERON:0003056;1.80e-38;3!UBERON:0006238;2.07e-11;10!CL:0000339;1.02e-07;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3093;1.53e-10;11!DOID:5409;1.96e-08;4|ontology_enrichment_disease_v019_2=DOID:3093,1.53e-10,11;DOID:5409,1.96e-08,4|ontology_enrichment_uberon=UBERON:0000966!4.95e-42!5;UBERON:0005388!4.95e-42!5;UBERON:0001802!4.95e-42!5;UBERON:0000970!1.04e-25!20;UBERON:0001781!1.46e-25!3;UBERON:0001782!1.46e-25!3;UBERON:0005424!1.46e-25!3;UBERON:0002104!1.93e-24!21;UBERON:0000020!3.13e-22!23;UBERON:0001032!2.90e-21!24;UBERON:0004456!2.90e-21!24;UBERON:0000019!9.94e-21!19;UBERON:0000047!9.94e-21!19;UBERON:0004088!9.94e-21!19;UBERON:0003072!9.94e-21!19;UBERON:0003071!9.94e-21!19;UBERON:0004128!9.94e-21!19;UBERON:0001456!1.09e-18!21;UBERON:0007625!1.47e-18!11;UBERON:0001905!3.16e-18!2;UBERON:0002757!3.16e-18!2;UBERON:0010134!3.16e-18!2;UBERON:0002784!3.16e-18!2;UBERON:0005408!3.16e-18!2;UBERON:0001899!3.16e-18!2;UBERON:0005085!2.47e-13!29;UBERON:0003056!1.21e-09!61;UBERON:0003296!1.43e-09!4;UBERON:0010133!1.43e-09!4;UBERON:0005743!4.79e-08!86;UBERON:0001444!9.39e-08!48;UBERON:0000073!3.73e-07!94;UBERON:0001016!3.73e-07!94|ontology_enrichment_uberon_v019=UBERON:0001905;1.50e-56;2!UBERON:0002757;1.50e-56;2!UBERON:0010134;1.50e-56;2!UBERON:0005408;1.50e-56;2!UBERON:0001899;1.50e-56;2!UBERON:0003296;6.47e-29;4!UBERON:0010133;6.47e-29;4!UBERON:0002784;6.47e-29;4!UBERON:0000966;1.44e-23;5!UBERON:0005388;1.44e-23;5!UBERON:0001802;1.44e-23;5!UBERON:0001894;5.13e-17;7!UBERON:0000970;1.84e-13;20!UBERON:0002104;7.43e-13;21!UBERON:0000020;8.40e-12;23!UBERON:0001032;2.43e-11;24!UBERON:0004456;2.43e-11;24!UBERON:0000019;6.19e-07;19!UBERON:0000047;6.19e-07;19!UBERON:0004088;6.19e-07;19!UBERON:0010230;6.19e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.13e-56,2;UBERON:0002757,1.13e-56,2;UBERON:0010134,1.13e-56,2;UBERON:0005408,1.13e-56,2;UBERON:0001899,1.13e-56,2;UBERON:0003296,5.61e-29,4;UBERON:0010133,5.61e-29,4;UBERON:0002784,5.61e-29,4;UBERON:0000966,8.63e-20,6;UBERON:0005388,8.63e-20,6;UBERON:0001802,8.63e-20,6;UBERON:0001894,4.73e-17,7;UBERON:0006222,4.73e-17,7;UBERON:0000970,7.73e-13,21;UBERON:0002104,7.73e-13,21;UBERON:0000020,2.52e-11,24;UBERON:0001032,2.52e-11,24;UBERON:0004456,2.52e-11,24;UBERON:0003056,9.25e-08,61;UBERON:0000955,5.84e-07,68;UBERON:0006238,5.84e-07,68|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.397589304964456,0.580969714347592,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97157629717171,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.275078873194468,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0168820971564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74991285114801,3.02655349996942,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,3.00201485541957,12.7991025503509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.58589565543461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@TULP1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7287 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12423 | |||
|TSSclassifier=S | |||
|UniProt=O00294 | |||
|association_with_transcript=0bp_to_ENST00000229771_5end | |||
|coexpression_cluster_id=C535 | |||
|description=CAGE_peak_4_at_TULP1_5end | |||
|id=chr6:35480705..35480718,- | |||
|ontology_enrichment_celltype=CL:0002322!1.15e-41!5;CL:0002586!1.46e-25!3;CL:0000147!6.16e-21!14;CL:0000149!2.44e-19!4;CL:0000325!1.15e-09!39;CL:0000148!4.76e-08!10;CL:0000541!4.76e-08!10;CL:0000133!9.68e-08!59;CL:0000075!1.79e-07!27;CL:0000710!8.78e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0000243;1.02e-07;15!CL:0000125;1.02e-07;15!CL:0000095;5.34e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.02e-07,15;CL:0000125,1.02e-07,15;CL:0000030,1.02e-07,15;CL:0000339,1.02e-07,15;CL:0000095,5.34e-07,17;CL:0000123,5.34e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.80e-38;3!UBERON:0006238;2.07e-11;10!CL:0000339;1.02e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;1.53e-10;11!DOID:5409;1.96e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.53e-10,11;DOID:5409,1.96e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!4.95e-42!5;UBERON:0005388!4.95e-42!5;UBERON:0001802!4.95e-42!5;UBERON:0000970!1.04e-25!20;UBERON:0001781!1.46e-25!3;UBERON:0001782!1.46e-25!3;UBERON:0005424!1.46e-25!3;UBERON:0002104!1.93e-24!21;UBERON:0000020!3.13e-22!23;UBERON:0001032!2.90e-21!24;UBERON:0004456!2.90e-21!24;UBERON:0000019!9.94e-21!19;UBERON:0000047!9.94e-21!19;UBERON:0004088!9.94e-21!19;UBERON:0003072!9.94e-21!19;UBERON:0003071!9.94e-21!19;UBERON:0004128!9.94e-21!19;UBERON:0001456!1.09e-18!21;UBERON:0007625!1.47e-18!11;UBERON:0001905!3.16e-18!2;UBERON:0002757!3.16e-18!2;UBERON:0010134!3.16e-18!2;UBERON:0002784!3.16e-18!2;UBERON:0005408!3.16e-18!2;UBERON:0001899!3.16e-18!2;UBERON:0005085!2.47e-13!29;UBERON:0003056!1.21e-09!61;UBERON:0003296!1.43e-09!4;UBERON:0010133!1.43e-09!4;UBERON:0005743!4.79e-08!86;UBERON:0001444!9.39e-08!48;UBERON:0000073!3.73e-07!94;UBERON:0001016!3.73e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.50e-56;2!UBERON:0002757;1.50e-56;2!UBERON:0010134;1.50e-56;2!UBERON:0005408;1.50e-56;2!UBERON:0001899;1.50e-56;2!UBERON:0003296;6.47e-29;4!UBERON:0010133;6.47e-29;4!UBERON:0002784;6.47e-29;4!UBERON:0000966;1.44e-23;5!UBERON:0005388;1.44e-23;5!UBERON:0001802;1.44e-23;5!UBERON:0001894;5.13e-17;7!UBERON:0000970;1.84e-13;20!UBERON:0002104;7.43e-13;21!UBERON:0000020;8.40e-12;23!UBERON:0001032;2.43e-11;24!UBERON:0004456;2.43e-11;24!UBERON:0000019;6.19e-07;19!UBERON:0000047;6.19e-07;19!UBERON:0004088;6.19e-07;19!UBERON:0010230;6.19e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.13e-56,2;UBERON:0002757,1.13e-56,2;UBERON:0010134,1.13e-56,2;UBERON:0005408,1.13e-56,2;UBERON:0001899,1.13e-56,2;UBERON:0003296,5.61e-29,4;UBERON:0010133,5.61e-29,4;UBERON:0002784,5.61e-29,4;UBERON:0000966,8.63e-20,6;UBERON:0005388,8.63e-20,6;UBERON:0001802,8.63e-20,6;UBERON:0001894,4.73e-17,7;UBERON:0006222,4.73e-17,7;UBERON:0000970,7.73e-13,21;UBERON:0002104,7.73e-13,21;UBERON:0000020,2.52e-11,24;UBERON:0001032,2.52e-11,24;UBERON:0004456,2.52e-11,24;UBERON:0003056,9.25e-08,61;UBERON:0000955,5.84e-07,68;UBERON:0006238,5.84e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.397589304964456,0.580969714347592,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97157629717171,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.275078873194468,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0168820971564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74991285114801,3.02655349996942,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,3.00201485541957,12.7991025503509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.58589565543461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@TULP1 | |||
}} |
Revision as of 20:41, 13 September 2013
Short description: | p4@TULP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_TULP1_5end |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | 0bp_to_ENST00000229771_5end |
EntrezGene: | TULP1 |
HGNC: | 12423 |
UniProt: | O00294 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.02e-07 | 15 |
glial cell | 1.02e-07 | 15 |
glioblast | 1.02e-07 | 15 |
glioblast (sensu Vertebrata) | 1.02e-07 | 15 |
neuron associated cell | 5.34e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.34e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.13e-56 | 2 |
regional part of epithalamus | 1.13e-56 | 2 |
secretory circumventricular organ | 1.13e-56 | 2 |
circumventricular organ | 1.13e-56 | 2 |
epithalamus | 1.13e-56 | 2 |
gland of diencephalon | 5.61e-29 | 4 |
neuroendocrine gland | 5.61e-29 | 4 |
regional part of diencephalon | 5.61e-29 | 4 |
retina | 8.63e-20 | 6 |
photoreceptor array | 8.63e-20 | 6 |
posterior segment of eyeball | 8.63e-20 | 6 |
diencephalon | 4.73e-17 | 7 |
future diencephalon | 4.73e-17 | 7 |
eye | 7.73e-13 | 21 |
visual system | 7.73e-13 | 21 |
sense organ | 2.52e-11 | 24 |
sensory system | 2.52e-11 | 24 |
entire sense organ system | 2.52e-11 | 24 |
pre-chordal neural plate | 9.25e-08 | 61 |
brain | 5.84e-07 | 68 |
future brain | 5.84e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.53e-10 | 11 |
lung small cell carcinoma | 1.96e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.