FFCP PHASE1:Hg19::chr6:31544299..31544311,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7124|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=11892|TSSclassifier=S|UniProt=|association_with_transcript=7bp_to_uc003nuj.2_5end|coexpression_cluster_id=C0|description=CAGE_peak_7_at_TNF_5end|id=chr6:31544299..31544311,+|ontology_enrichment_celltype=CL:0000738!1.14e-47!140;CL:0002031!1.23e-45!124;CL:0002087!1.84e-43!119;CL:0002057!2.20e-43!42;CL:0000037!4.94e-42!172;CL:0000566!4.94e-42!172;CL:0002032!2.15e-40!165;CL:0000837!2.15e-40!165;CL:0000860!5.08e-40!45;CL:0000988!4.77e-39!182;CL:0000557!1.52e-38!71;CL:0002009!2.54e-37!65;CL:0000766!1.77e-35!76;CL:0000839!6.11e-34!70;CL:0002194!2.89e-33!63;CL:0000576!2.89e-33!63;CL:0000040!2.89e-33!63;CL:0000559!2.89e-33!63;CL:0000763!3.75e-30!112;CL:0000049!3.75e-30!112;CL:0000134!1.30e-14!358;CL:0002320!4.33e-14!365;CL:0000219!2.97e-12!390;CL:0000048!4.60e-10!430;CL:0000723!9.40e-10!436;CL:0000838!1.43e-09!52;CL:0000034!2.36e-09!444;CL:0000542!2.51e-09!53;CL:0000051!2.51e-09!53;CL:0000840!2.08e-08!5;CL:0001029!2.08e-08!5;CL:0001014!1.78e-07!2;CL:0001016!1.78e-07!2;CL:0000063!7.38e-07!578|ontology_enrichment_celltype_v019=CL:0000860;1.03e-73;33!CL:0002057;1.03e-73;33!CL:0000473;1.73e-56;39!CL:0000234;1.73e-56;39!CL:0000576;2.18e-30;48!CL:0000766;1.05e-21;69!CL:0002087;1.89e-14;104!CL:0000763;1.37e-13;100|ontology_enrichment_celltype_v019_2=CL:0000860,8.30e-62,42;CL:0002057,8.30e-62,42;CL:0000473,7.85e-61,48;CL:0000234,7.85e-61,48;CL:0002009,2.07e-52,61;CL:0002194,2.99e-48,59;CL:0000576,2.99e-48,59;CL:0000040,2.99e-48,59;CL:0000559,2.99e-48,59;CL:0000557,1.34e-47,67;CL:0000839,5.48e-43,66;CL:0000766,2.80e-39,72;CL:0000763,7.31e-29,108;CL:0000049,7.31e-29,108;CL:0002031,8.97e-26,120;CL:0002087,6.75e-24,115;CL:0000738,1.71e-22,136;CL:0002032,1.17e-18,161;CL:0000837,1.17e-18,161;CL:0000037,8.73e-18,168;CL:0000988,9.16e-17,177;CL:0000134,3.98e-07,354;CL:0002320,6.16e-07,361|ontology_enrichment_development_v019=CL:0002057;1.37e-43;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.73e-33!80;UBERON:0001474!2.15e-30!86;UBERON:0002390!6.95e-30!102;UBERON:0003061!6.95e-30!102;UBERON:0002193!2.04e-26!112;UBERON:0004765!2.14e-26!101;UBERON:0001434!2.14e-26!101;UBERON:0002405!3.98e-22!115;UBERON:0002384!2.23e-13!375;UBERON:0002204!1.14e-12!167;UBERON:0003081!1.61e-09!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.79e-42,76;UBERON:0001474,1.33e-38,82;UBERON:0004765,5.14e-35,90;UBERON:0002405,7.93e-34,93;UBERON:0002390,5.25e-32,98;UBERON:0003061,5.25e-32,98;UBERON:0001434,2.50e-31,100;UBERON:0002193,7.31e-29,108;UBERON:0002204,6.62e-18,167;UBERON:0003081,2.57e-14,203;UBERON:0000926,2.45e-08,315;UBERON:0004120,2.45e-08,315;UBERON:0006603,2.45e-08,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0,0.0787107813136792,0,0,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.145398238779565,0,0,0.232429036905685,0.822335776043652,1.85823822537062,5.46615545412086,2.30544635876191,3.07426898855161,32.0613483085055,20.0100251910986,13.5426486594342,0,0.545812300115692,0.224723484445085,79.8878959088056,34.6603349242181,55.6223299445166,0,0,0,6.96502172708602,5.10646702222026,6.22822248995575,0,0,0.434377689410233,2.42159801053347,2.94622108790052,6.64571013625857,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.616804496998528,0,0,0,0,0.557052284425868,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0.492663237895943,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.112085143993527,0.394061520403854,0.215627574859517,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0.687010689511529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,1.05499032264014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7124 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11892 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=7bp_to_uc003nuj.2_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_7_at_TNF_5end | |||
|id=chr6:31544299..31544311,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.14e-47!140;CL:0002031!1.23e-45!124;CL:0002087!1.84e-43!119;CL:0002057!2.20e-43!42;CL:0000037!4.94e-42!172;CL:0000566!4.94e-42!172;CL:0002032!2.15e-40!165;CL:0000837!2.15e-40!165;CL:0000860!5.08e-40!45;CL:0000988!4.77e-39!182;CL:0000557!1.52e-38!71;CL:0002009!2.54e-37!65;CL:0000766!1.77e-35!76;CL:0000839!6.11e-34!70;CL:0002194!2.89e-33!63;CL:0000576!2.89e-33!63;CL:0000040!2.89e-33!63;CL:0000559!2.89e-33!63;CL:0000763!3.75e-30!112;CL:0000049!3.75e-30!112;CL:0000134!1.30e-14!358;CL:0002320!4.33e-14!365;CL:0000219!2.97e-12!390;CL:0000048!4.60e-10!430;CL:0000723!9.40e-10!436;CL:0000838!1.43e-09!52;CL:0000034!2.36e-09!444;CL:0000542!2.51e-09!53;CL:0000051!2.51e-09!53;CL:0000840!2.08e-08!5;CL:0001029!2.08e-08!5;CL:0001014!1.78e-07!2;CL:0001016!1.78e-07!2;CL:0000063!7.38e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.03e-73;33!CL:0002057;1.03e-73;33!CL:0000473;1.73e-56;39!CL:0000234;1.73e-56;39!CL:0000576;2.18e-30;48!CL:0000766;1.05e-21;69!CL:0002087;1.89e-14;104!CL:0000763;1.37e-13;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.30e-62,42;CL:0002057,8.30e-62,42;CL:0000473,7.85e-61,48;CL:0000234,7.85e-61,48;CL:0002009,2.07e-52,61;CL:0002194,2.99e-48,59;CL:0000576,2.99e-48,59;CL:0000040,2.99e-48,59;CL:0000559,2.99e-48,59;CL:0000557,1.34e-47,67;CL:0000839,5.48e-43,66;CL:0000766,2.80e-39,72;CL:0000763,7.31e-29,108;CL:0000049,7.31e-29,108;CL:0002031,8.97e-26,120;CL:0002087,6.75e-24,115;CL:0000738,1.71e-22,136;CL:0002032,1.17e-18,161;CL:0000837,1.17e-18,161;CL:0000037,8.73e-18,168;CL:0000988,9.16e-17,177;CL:0000134,3.98e-07,354;CL:0002320,6.16e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.37e-43;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.73e-33!80;UBERON:0001474!2.15e-30!86;UBERON:0002390!6.95e-30!102;UBERON:0003061!6.95e-30!102;UBERON:0002193!2.04e-26!112;UBERON:0004765!2.14e-26!101;UBERON:0001434!2.14e-26!101;UBERON:0002405!3.98e-22!115;UBERON:0002384!2.23e-13!375;UBERON:0002204!1.14e-12!167;UBERON:0003081!1.61e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.79e-42,76;UBERON:0001474,1.33e-38,82;UBERON:0004765,5.14e-35,90;UBERON:0002405,7.93e-34,93;UBERON:0002390,5.25e-32,98;UBERON:0003061,5.25e-32,98;UBERON:0001434,2.50e-31,100;UBERON:0002193,7.31e-29,108;UBERON:0002204,6.62e-18,167;UBERON:0003081,2.57e-14,203;UBERON:0000926,2.45e-08,315;UBERON:0004120,2.45e-08,315;UBERON:0006603,2.45e-08,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0,0.0787107813136792,0,0,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.145398238779565,0,0,0.232429036905685,0.822335776043652,1.85823822537062,5.46615545412086,2.30544635876191,3.07426898855161,32.0613483085055,20.0100251910986,13.5426486594342,0,0.545812300115692,0.224723484445085,79.8878959088056,34.6603349242181,55.6223299445166,0,0,0,6.96502172708602,5.10646702222026,6.22822248995575,0,0,0.434377689410233,2.42159801053347,2.94622108790052,6.64571013625857,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.616804496998528,0,0,0,0,0.557052284425868,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0.492663237895943,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.112085143993527,0.394061520403854,0.215627574859517,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0.687010689511529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,1.05499032264014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,2.32140586367385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p7@TNF | |||
}} |
Revision as of 20:12, 13 September 2013
Short description: | p7@TNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_TNF_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 7bp_to_uc003nuj.2_5end |
EntrezGene: | TNF |
HGNC: | 11892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.30e-62 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.30e-62 | 42 |
defensive cell | 7.85e-61 | 48 |
phagocyte | 7.85e-61 | 48 |
macrophage dendritic cell progenitor | 2.07e-52 | 61 |
monopoietic cell | 2.99e-48 | 59 |
monocyte | 2.99e-48 | 59 |
monoblast | 2.99e-48 | 59 |
promonocyte | 2.99e-48 | 59 |
granulocyte monocyte progenitor cell | 1.34e-47 | 67 |
myeloid lineage restricted progenitor cell | 5.48e-43 | 66 |
myeloid leukocyte | 2.80e-39 | 72 |
myeloid cell | 7.31e-29 | 108 |
common myeloid progenitor | 7.31e-29 | 108 |
hematopoietic lineage restricted progenitor cell | 8.97e-26 | 120 |
nongranular leukocyte | 6.75e-24 | 115 |
leukocyte | 1.71e-22 | 136 |
hematopoietic oligopotent progenitor cell | 1.17e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-18 | 161 |
hematopoietic stem cell | 8.73e-18 | 168 |
hematopoietic cell | 9.16e-17 | 177 |
mesenchymal cell | 3.98e-07 | 354 |
connective tissue cell | 6.16e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.79e-42 | 76 |
bone element | 1.33e-38 | 82 |
skeletal element | 5.14e-35 | 90 |
immune system | 7.93e-34 | 93 |
hematopoietic system | 5.25e-32 | 98 |
blood island | 5.25e-32 | 98 |
skeletal system | 2.50e-31 | 100 |
hemolymphoid system | 7.31e-29 | 108 |
musculoskeletal system | 6.62e-18 | 167 |
lateral plate mesoderm | 2.57e-14 | 203 |
mesoderm | 2.45e-08 | 315 |
mesoderm-derived structure | 2.45e-08 | 315 |
presumptive mesoderm | 2.45e-08 | 315 |
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