FFCP PHASE1:Hg19::chr6:21666633..21666681,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=401237|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=28245|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end|coexpression_cluster_id=C724|description=CAGE_peak_1_at_LINC00340_5end|id=chr6:21666633..21666681,+|ontology_enrichment_celltype=CL:0000115!2.92e-13!35;CL:0002139!7.29e-12!24;CL:0002078!7.35e-10!44;CL:0000222!9.63e-10!119;CL:0000393!2.94e-09!60;CL:0000211!2.94e-09!60;CL:0000071!3.54e-08!18;CL:0002546!3.54e-08!18;CL:0000183!2.22e-07!59;CL:0000047!5.92e-07!8|ontology_enrichment_celltype_v019=CL:0002139;5.91e-15;24!CL:0000115;7.22e-15;36!CL:0000071;6.10e-10;18!CL:0002078;2.42e-09;45!CL:0000540;1.59e-07;6!CL:0000404;1.59e-07;6!CL:0002138;7.10e-07;6!CL:0002319;9.38e-07;25|ontology_enrichment_celltype_v019_2=CL:0000115,2.99e-17,36;CL:0002139,5.75e-15,24;CL:0002078,4.06e-14,45;CL:0000071,5.91e-10,18;CL:0002546,5.91e-10,18;CL:0000222,3.98e-09,121;CL:0000047,5.34e-09,8;CL:0000213,1.52e-08,58;CL:0000215,1.52e-08,58;CL:0000540,1.68e-07,6;CL:0000031,1.68e-07,6;CL:0000404,1.68e-07,6;CL:0005020,7.17e-07,6;CL:0002138,7.17e-07,6;CL:0005022,7.17e-07,6;CL:0002319,8.64e-07,25|ontology_enrichment_development_v019=CL:0002546;6.10e-10;18!CL:0000031;1.59e-07;6!CL:0005022;7.10e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004111!1.42e-23!241;UBERON:0000477!7.86e-23!286;UBERON:0000025!4.46e-22!194;UBERON:0002049!7.44e-19!79;UBERON:0007798!7.44e-19!79;UBERON:0001009!1.84e-18!113;UBERON:0000119!5.07e-18!312;UBERON:0004535!5.67e-18!110;UBERON:0000483!8.16e-18!309;UBERON:0000055!9.23e-16!69;UBERON:0003914!2.56e-15!118;UBERON:0004872!1.42e-14!84;UBERON:0001981!3.80e-14!60;UBERON:0007500!3.80e-14!60;UBERON:0004537!3.80e-14!60;UBERON:0006965!3.80e-14!60;UBERON:0007023!1.39e-12!115;UBERON:0005743!2.27e-12!86;UBERON:0001017!4.88e-12!82;UBERON:0003103!2.33e-11!69;UBERON:0000073!3.27e-11!94;UBERON:0001016!3.27e-11!94;UBERON:0000481!5.46e-11!347;UBERON:0000922!5.97e-11!612;UBERON:0003075!1.37e-10!86;UBERON:0007284!1.37e-10!86;UBERON:0000467!4.86e-10!625;UBERON:0000480!6.83e-10!626;UBERON:0000468!7.57e-10!659;UBERON:0002346!1.13e-09!90;UBERON:0001637!1.44e-09!42;UBERON:0003509!1.44e-09!42;UBERON:0004572!1.44e-09!42;UBERON:0004573!5.08e-09!33;UBERON:0004571!5.08e-09!33;UBERON:0002050!1.00e-08!605;UBERON:0005423!1.00e-08!605;UBERON:0000923!2.23e-08!604;UBERON:0005291!2.23e-08!604;UBERON:0006598!2.23e-08!604;UBERON:0002532!2.23e-08!604;UBERON:0001049!2.29e-08!57;UBERON:0005068!2.29e-08!57;UBERON:0006241!2.29e-08!57;UBERON:0007135!2.29e-08!57;UBERON:0000153!3.22e-08!129;UBERON:0007811!3.22e-08!129;UBERON:0001986!3.54e-08!18;UBERON:0004638!3.54e-08!18;UBERON:0004852!3.54e-08!18;UBERON:0003056!7.31e-08!61;UBERON:0002616!1.18e-07!59;UBERON:0000955!2.28e-07!69;UBERON:0006238!2.28e-07!69;UBERON:0004121!2.54e-07!169;UBERON:0000033!2.57e-07!123;UBERON:0000924!7.20e-07!173;UBERON:0006601!7.20e-07!173|ontology_enrichment_uberon_v019=UBERON:0000922;2.16e-14;49!UBERON:0004573;7.61e-11;33!UBERON:0004571;7.61e-11;33!UBERON:0004638;6.10e-10;18!UBERON:0001986;6.10e-10;18!UBERON:0004852;6.10e-10;18!UBERON:0001637;2.30e-09;42!UBERON:0003509;2.30e-09;42!UBERON:0004572;2.30e-09;42!UBERON:0000055;2.79e-09;65!UBERON:0003914;6.80e-09;74!UBERON:0007500;1.61e-08;56!UBERON:0001981;1.61e-08;56!UBERON:0004537;1.61e-08;56!UBERON:0002049;2.43e-08;75!UBERON:0007798;2.43e-08;75!UBERON:0000487;2.46e-08;22!UBERON:0006914;5.26e-08;25|ontology_enrichment_uberon_v019_2=UBERON:0002049,7.59e-22,78;UBERON:0007798,7.59e-22,78;UBERON:0000055,2.86e-20,68;UBERON:0004535,9.20e-20,109;UBERON:0001009,2.03e-19,112;UBERON:0004111,2.66e-18,240;UBERON:0007500,1.92e-17,59;UBERON:0001981,1.92e-17,59;UBERON:0004537,1.92e-17,59;UBERON:0006965,1.92e-17,59;UBERON:0003914,1.16e-16,117;UBERON:0000025,1.18e-15,192;UBERON:0004872,2.03e-15,83;UBERON:0000119,7.78e-12,309;UBERON:0000483,8.24e-12,306;UBERON:0004573,1.48e-11,33;UBERON:0004571,1.48e-11,33;UBERON:0001637,7.03e-11,42;UBERON:0003509,7.03e-11,42;UBERON:0004572,7.03e-11,42;UBERON:0003103,3.81e-10,68;UBERON:0004638,5.91e-10,18;UBERON:0001986,5.91e-10,18;UBERON:0004852,5.91e-10,18;UBERON:0000922,8.00e-10,592;UBERON:0000487,2.29e-08,22;UBERON:0006914,5.01e-08,25;UBERON:0005423,8.04e-08,581;UBERON:0002050,7.76e-07,564;UBERON:0006555,9.17e-07,16;UBERON:0004819,9.17e-07,16;UBERON:0000923,9.68e-07,560;UBERON:0010316,9.68e-07,560;UBERON:0005291,9.68e-07,560;UBERON:0006598,9.68e-07,560;UBERON:0010317,9.68e-07,560;UBERON:0002532,9.68e-07,560|phase1_expression=0,0,0,0,0,0,0,0,0,2.7030733015166,6.28021051175185,0,0,0.37129905888014,0,5.3786011716142,6.02694528023977,2.92124036154949,3.41552959153355,2.70866327768933,0.204000691244253,3.76145665773705,9.15955158819382,9.17058647988324,11.8010081219115,0,0.328402357799783,0.0787107813136792,0,0,0.928896739896456,0,0,0,0,0,8.51441274071057,0.553995408531877,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0.3447456807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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=401237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | |||
|coexpression_cluster_id=C724 | |||
|description=CAGE_peak_1_at_LINC00340_5end | |||
|id=chr6:21666633..21666681,+ | |||
|ontology_enrichment_celltype=CL:0000115!2.92e-13!35;CL:0002139!7.29e-12!24;CL:0002078!7.35e-10!44;CL:0000222!9.63e-10!119;CL:0000393!2.94e-09!60;CL:0000211!2.94e-09!60;CL:0000071!3.54e-08!18;CL:0002546!3.54e-08!18;CL:0000183!2.22e-07!59;CL:0000047!5.92e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.91e-15;24!CL:0000115;7.22e-15;36!CL:0000071;6.10e-10;18!CL:0002078;2.42e-09;45!CL:0000540;1.59e-07;6!CL:0000404;1.59e-07;6!CL:0002138;7.10e-07;6!CL:0002319;9.38e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.99e-17,36;CL:0002139,5.75e-15,24;CL:0002078,4.06e-14,45;CL:0000071,5.91e-10,18;CL:0002546,5.91e-10,18;CL:0000222,3.98e-09,121;CL:0000047,5.34e-09,8;CL:0000213,1.52e-08,58;CL:0000215,1.52e-08,58;CL:0000540,1.68e-07,6;CL:0000031,1.68e-07,6;CL:0000404,1.68e-07,6;CL:0005020,7.17e-07,6;CL:0002138,7.17e-07,6;CL:0005022,7.17e-07,6;CL:0002319,8.64e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002546;6.10e-10;18!CL:0000031;1.59e-07;6!CL:0005022;7.10e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p1@LINC00340 | |||
}} |
Revision as of 19:36, 13 September 2013
Short description: | p1@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LINC00340_5end |
Coexpression cluster: | C724_transitionalcell_parietal_occipital_duodenum_temporal_non_CD34 |
Association with transcript: | 0bp_to_NR_015410, uc003ndj.2, uc011djj.1_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.99e-17 | 36 |
endothelial cell of vascular tree | 5.75e-15 | 24 |
meso-epithelial cell | 4.06e-14 | 45 |
blood vessel endothelial cell | 5.91e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.91e-10 | 18 |
mesodermal cell | 3.98e-09 | 121 |
neuronal stem cell | 5.34e-09 | 8 |
lining cell | 1.52e-08 | 58 |
barrier cell | 1.52e-08 | 58 |
neuron | 1.68e-07 | 6 |
neuroblast | 1.68e-07 | 6 |
electrically signaling cell | 1.68e-07 | 6 |
lymphangioblast | 7.17e-07 | 6 |
endothelial cell of lymphatic vessel | 7.17e-07 | 6 |
vascular lymphangioblast | 7.17e-07 | 6 |
neural cell | 8.64e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.