FFCP PHASE1:Hg19::chr6:130536707..130536763,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=154075|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21574|TSSclassifier=S|UniProt=E9PR45|association_with_transcript=23bp_to_ENST00000532763_5end|coexpression_cluster_id=C98|description=CAGE_peak_2_at_SAMD3_5end|id=chr6:130536707..130536763,-|ontology_enrichment_celltype=CL:0000738!1.10e-27!140;CL:0002087!5.77e-25!119;CL:0000791!1.67e-20!18;CL:0000789!1.67e-20!18;CL:0002420!1.67e-20!18;CL:0002419!1.67e-20!18;CL:0000790!1.67e-20!18;CL:0002031!1.72e-20!124;CL:0000037!3.20e-19!172;CL:0000566!3.20e-19!172;CL:0000084!2.37e-17!25;CL:0000827!2.37e-17!25;CL:0000988!8.03e-17!182;CL:0002032!3.96e-16!165;CL:0000837!3.96e-16!165;CL:0002057!1.14e-14!42;CL:0000625!1.31e-14!11;CL:0000766!2.16e-14!76;CL:0000860!4.74e-13!45;CL:0002194!4.79e-12!63;CL:0000576!4.79e-12!63;CL:0000040!4.79e-12!63;CL:0000559!4.79e-12!63;CL:0002009!2.39e-11!65;CL:0000838!2.65e-11!52;CL:0000542!6.51e-11!53;CL:0000051!6.51e-11!53;CL:0000839!1.97e-10!70;CL:0000557!3.89e-10!71;CL:0000763!6.01e-07!112;CL:0000049!6.01e-07!112|ontology_enrichment_celltype_v019=CL:0000791;1.54e-30;18!CL:0000789;1.54e-30;18!CL:0002419;1.54e-30;18!CL:0000625;5.78e-26;11!CL:0000084;1.21e-20;25!CL:0000094;1.17e-09;8!CL:0000623;2.46e-08;3!CL:0000767;5.18e-08;3!CL:0000226;8.45e-08;3!CL:0000842;8.45e-08;3!CL:0002087;1.91e-07;104!CL:0002619;6.24e-07;3!CL:0000081;8.51e-07;11|ontology_enrichment_celltype_v019_2=CL:0000791,1.62e-30,18;CL:0000789,1.62e-30,18;CL:0002420,1.62e-30,18;CL:0002419,1.62e-30,18;CL:0000790,1.62e-30,18;CL:0000625,5.98e-26,11;CL:0000738,1.32e-21,136;CL:0000084,1.25e-20,25;CL:0000827,1.25e-20,25;CL:0002087,3.44e-18,115;CL:0000037,3.92e-15,168;CL:0000988,9.38e-14,177;CL:0002031,1.35e-13,120;CL:0000838,6.97e-13,52;CL:0000542,1.56e-12,53;CL:0000051,1.56e-12,53;CL:0002032,1.70e-12,161;CL:0000837,1.70e-12,161;CL:0000094,1.11e-09,8;CL:0000623,2.41e-08,3;CL:0000825,2.41e-08,3;CL:0000767,5.07e-08,3;CL:0000766,5.82e-08,72;CL:0000226,8.57e-08,3;CL:0000842,8.57e-08,3;CL:0002619,4.55e-07,3;CL:0000081,8.21e-07,11|ontology_enrichment_development_v019=CL:0000790;1.54e-30;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.92e-23!115;UBERON:0002390!6.00e-19!102;UBERON:0003061!6.00e-19!102;UBERON:0002193!1.43e-16!112;UBERON:0000178!3.22e-11!15;UBERON:0000179!3.22e-11!15;UBERON:0000463!3.22e-11!15;UBERON:0002371!1.96e-08!80;UBERON:0002405!1.62e-07!115;UBERON:0001474!3.65e-07!86|ontology_enrichment_uberon_v019=UBERON:0000178;7.27e-21;15!UBERON:0000179;7.27e-21;15!UBERON:0000463;7.27e-21;15!UBERON:0002390;1.64e-13;32!UBERON:0002193;4.31e-08;42!UBERON:0004177;5.58e-07;5!UBERON:0005057;5.58e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.40e-21,15;UBERON:0000179,7.40e-21,15;UBERON:0000463,7.40e-21,15;UBERON:0002390,7.63e-16,98;UBERON:0003061,7.63e-16,98;UBERON:0002193,1.34e-14,108;UBERON:0004177,1.08e-10,7;UBERON:0005057,1.08e-10,7;UBERON:0002370,6.80e-09,4;UBERON:0005058,6.80e-09,4;UBERON:0009113,6.80e-09,4;UBERON:0003295,6.80e-09,4;UBERON:0005562,6.80e-09,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.164201178899891,0.550975469195755,14.5544782434094,84.0586381832896,9.75341576891279,0,0,0,0,0,0.293600439334847,11.0799081706375,6.21687787157439,8.46342395791822,1.79132379391939,7.77344798445551,2.83333124397605,0.581592955118259,0.377875943688809,0,1.85943229524548,0,0.309706370895104,0.863077176966451,0.512321413058201,0.236482229888585,1.37898272294647,0.645484683583826,1.35426486594342,1.12945403725563,1.09162460023138,0,1.53041946185451,1.28371610830437,0,0.659702600373432,0.598390972864896,0.852449501065388,0.580418477257168,1.70215567407342,0.622822248995575,0.75374599577023,1.0429658368404,0.217188844705117,0.605399502633369,0.736555271975129,0.632924774881769,0,0.212604299965044,0,0,0,0,0,0.19891667719909,0,0,0.546138611262131,0,0,0,0,0,0,0,1.17447437874188,0,0,6.72610275577843,0,1.37696839079683,4.71612915298998,0.822405995998037,1.67186495390678,0.32592226663359,0.946895611469467,0,3.7879555340959,2.3568472597987,2.21533894583621,1.35401931882508,0.512365278902701,1.1705341280389,4.60426132890293,1.93445012450094,7.82468331484642,4.15202376853769,9.09638815505025,4.18142095219907,9.29136610120043,8.81407135284419,10.9960782554442,26.5670676620478,38.8649805475398,70.9680964703496,57.0271226669025,70.3185806093199,83.191297250372,67.4625923382668,58.9575357589602,68.1536237444469,31.8538654295077,26.2091391867837,13.1790207533347,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.654895377488563,0,0,0.324547393654683,0,0,1.19245312152671,2.28797964312051,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.464775771478074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=154075 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21574 | |||
|TSSclassifier=S | |||
|UniProt=E9PR45 | |||
|association_with_transcript=23bp_to_ENST00000532763_5end | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_2_at_SAMD3_5end | |||
|id=chr6:130536707..130536763,- | |||
|ontology_enrichment_celltype=CL:0000738!1.10e-27!140;CL:0002087!5.77e-25!119;CL:0000791!1.67e-20!18;CL:0000789!1.67e-20!18;CL:0002420!1.67e-20!18;CL:0002419!1.67e-20!18;CL:0000790!1.67e-20!18;CL:0002031!1.72e-20!124;CL:0000037!3.20e-19!172;CL:0000566!3.20e-19!172;CL:0000084!2.37e-17!25;CL:0000827!2.37e-17!25;CL:0000988!8.03e-17!182;CL:0002032!3.96e-16!165;CL:0000837!3.96e-16!165;CL:0002057!1.14e-14!42;CL:0000625!1.31e-14!11;CL:0000766!2.16e-14!76;CL:0000860!4.74e-13!45;CL:0002194!4.79e-12!63;CL:0000576!4.79e-12!63;CL:0000040!4.79e-12!63;CL:0000559!4.79e-12!63;CL:0002009!2.39e-11!65;CL:0000838!2.65e-11!52;CL:0000542!6.51e-11!53;CL:0000051!6.51e-11!53;CL:0000839!1.97e-10!70;CL:0000557!3.89e-10!71;CL:0000763!6.01e-07!112;CL:0000049!6.01e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.54e-30;18!CL:0000789;1.54e-30;18!CL:0002419;1.54e-30;18!CL:0000625;5.78e-26;11!CL:0000084;1.21e-20;25!CL:0000094;1.17e-09;8!CL:0000623;2.46e-08;3!CL:0000767;5.18e-08;3!CL:0000226;8.45e-08;3!CL:0000842;8.45e-08;3!CL:0002087;1.91e-07;104!CL:0002619;6.24e-07;3!CL:0000081;8.51e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.62e-30,18;CL:0000789,1.62e-30,18;CL:0002420,1.62e-30,18;CL:0002419,1.62e-30,18;CL:0000790,1.62e-30,18;CL:0000625,5.98e-26,11;CL:0000738,1.32e-21,136;CL:0000084,1.25e-20,25;CL:0000827,1.25e-20,25;CL:0002087,3.44e-18,115;CL:0000037,3.92e-15,168;CL:0000988,9.38e-14,177;CL:0002031,1.35e-13,120;CL:0000838,6.97e-13,52;CL:0000542,1.56e-12,53;CL:0000051,1.56e-12,53;CL:0002032,1.70e-12,161;CL:0000837,1.70e-12,161;CL:0000094,1.11e-09,8;CL:0000623,2.41e-08,3;CL:0000825,2.41e-08,3;CL:0000767,5.07e-08,3;CL:0000766,5.82e-08,72;CL:0000226,8.57e-08,3;CL:0000842,8.57e-08,3;CL:0002619,4.55e-07,3;CL:0000081,8.21e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.54e-30;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.92e-23!115;UBERON:0002390!6.00e-19!102;UBERON:0003061!6.00e-19!102;UBERON:0002193!1.43e-16!112;UBERON:0000178!3.22e-11!15;UBERON:0000179!3.22e-11!15;UBERON:0000463!3.22e-11!15;UBERON:0002371!1.96e-08!80;UBERON:0002405!1.62e-07!115;UBERON:0001474!3.65e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.27e-21;15!UBERON:0000179;7.27e-21;15!UBERON:0000463;7.27e-21;15!UBERON:0002390;1.64e-13;32!UBERON:0002193;4.31e-08;42!UBERON:0004177;5.58e-07;5!UBERON:0005057;5.58e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.40e-21,15;UBERON:0000179,7.40e-21,15;UBERON:0000463,7.40e-21,15;UBERON:0002390,7.63e-16,98;UBERON:0003061,7.63e-16,98;UBERON:0002193,1.34e-14,108;UBERON:0004177,1.08e-10,7;UBERON:0005057,1.08e-10,7;UBERON:0002370,6.80e-09,4;UBERON:0005058,6.80e-09,4;UBERON:0009113,6.80e-09,4;UBERON:0003295,6.80e-09,4;UBERON:0005562,6.80e-09,4 | |||
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| |||
|short_description=p2@SAMD3 | |||
}} |
Revision as of 17:56, 13 September 2013
Short description: | p2@SAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SAMD3_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | 23bp_to_ENST00000532763_5end |
EntrezGene: | SAMD3 |
HGNC: | 21574 |
UniProt: | E9PR45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.62e-30 | 18 |
alpha-beta T cell | 1.62e-30 | 18 |
immature T cell | 1.62e-30 | 18 |
mature T cell | 1.62e-30 | 18 |
immature alpha-beta T cell | 1.62e-30 | 18 |
CD8-positive, alpha-beta T cell | 5.98e-26 | 11 |
leukocyte | 1.32e-21 | 136 |
T cell | 1.25e-20 | 25 |
pro-T cell | 1.25e-20 | 25 |
nongranular leukocyte | 3.44e-18 | 115 |
hematopoietic stem cell | 3.92e-15 | 168 |
hematopoietic cell | 9.38e-14 | 177 |
hematopoietic lineage restricted progenitor cell | 1.35e-13 | 120 |
lymphoid lineage restricted progenitor cell | 6.97e-13 | 52 |
lymphocyte | 1.56e-12 | 53 |
common lymphoid progenitor | 1.56e-12 | 53 |
hematopoietic oligopotent progenitor cell | 1.70e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.70e-12 | 161 |
granulocyte | 1.11e-09 | 8 |
natural killer cell | 2.41e-08 | 3 |
pro-NK cell | 2.41e-08 | 3 |
basophil | 5.07e-08 | 3 |
myeloid leukocyte | 5.82e-08 | 72 |
single nucleate cell | 8.57e-08 | 3 |
mononuclear cell | 8.57e-08 | 3 |
adult endothelial progenitor cell | 4.55e-07 | 3 |
blood cell | 8.21e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 7.40e-21 | 15 |
haemolymphatic fluid | 7.40e-21 | 15 |
organism substance | 7.40e-21 | 15 |
hematopoietic system | 7.63e-16 | 98 |
blood island | 7.63e-16 | 98 |
hemolymphoid system | 1.34e-14 | 108 |
hemopoietic organ | 1.08e-10 | 7 |
immune organ | 1.08e-10 | 7 |
thymus | 6.80e-09 | 4 |
hemolymphoid system gland | 6.80e-09 | 4 |
thymic region | 6.80e-09 | 4 |
pharyngeal gland | 6.80e-09 | 4 |
thymus primordium | 6.80e-09 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.