FFCP PHASE1:Hg19::chr6:125540724..125540736,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7164|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12006|TSSclassifier=N|UniProt=|association_with_transcript=-254bp_to_ENST00000524679_5end|coexpression_cluster_id=C42|description=CAGE_peak_12_at_TPD52L1_5end|id=chr6:125540724..125540736,+|ontology_enrichment_celltype=CL:0000064!1.52e-13!3;CL:0005012!1.52e-13!3;CL:0000067!1.52e-13!3;CL:0002304!1.52e-13!3|ontology_enrichment_celltype_v019=CL:0000342;6.72e-26;1!CL:0002565;6.72e-26;1!CL:0002586;1.74e-09;3!CL:0000147;5.36e-08;14!CL:0000306;1.98e-07;4!CL:0002222;1.98e-07;4!CL:0000149;1.98e-07;4!CL:0002224;1.98e-07;4|ontology_enrichment_celltype_v019_2=CL:0000342,5.93e-26,1;CL:0002565,5.93e-26,1;CL:0002586,1.67e-09,3;CL:0000147,5.18e-08,14;CL:0000149,1.92e-07,4;CL:0000306,2.04e-07,4;CL:0002222,2.04e-07,4;CL:0002224,2.04e-07,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3119;4.11e-08;14!DOID:5409;1.31e-07;4|ontology_enrichment_disease_v019_2=DOID:3119,4.04e-08,14;DOID:5409,1.31e-07,4|ontology_enrichment_uberon=UBERON:0002298!7.31e-25!8;UBERON:0007625!8.90e-24!11;UBERON:0003075!1.62e-21!86;UBERON:0007284!1.62e-21!86;UBERON:0002346!2.57e-20!90;UBERON:0000970!1.78e-19!20;UBERON:0002104!1.88e-18!21;UBERON:0000488!1.03e-17!4;UBERON:0000033!1.73e-17!123;UBERON:0000019!9.08e-17!19;UBERON:0000047!9.08e-17!19;UBERON:0004088!9.08e-17!19;UBERON:0003072!9.08e-17!19;UBERON:0003071!9.08e-17!19;UBERON:0004128!9.08e-17!19;UBERON:0000020!1.13e-16!23;UBERON:0000153!2.15e-16!129;UBERON:0007811!2.15e-16!129;UBERON:0001032!6.80e-16!24;UBERON:0004456!6.80e-16!24;UBERON:0003056!3.41e-15!61;UBERON:0001456!5.20e-15!21;UBERON:0005743!1.01e-13!86;UBERON:0001896!1.34e-13!3;UBERON:0005290!1.34e-13!3;UBERON:0010096!1.34e-13!3;UBERON:0001778!1.52e-13!3;UBERON:0001775!1.52e-13!3;UBERON:0006331!2.86e-13!3;UBERON:0007023!4.46e-13!115;UBERON:0000988!6.30e-13!3;UBERON:0003076!9.77e-13!15;UBERON:0003057!9.77e-13!15;UBERON:0001049!2.98e-12!57;UBERON:0005068!2.98e-12!57;UBERON:0006241!2.98e-12!57;UBERON:0007135!2.98e-12!57;UBERON:0004733!4.50e-12!12;UBERON:0002028!4.50e-12!12;UBERON:0007277!4.50e-12!12;UBERON:0004121!4.62e-12!169;UBERON:0000073!5.09e-12!94;UBERON:0001016!5.09e-12!94;UBERON:0002203!7.79e-12!6;UBERON:0001768!7.79e-12!6;UBERON:0000924!1.22e-11!173;UBERON:0006601!1.22e-11!173;UBERON:0004732!4.28e-11!13;UBERON:0000955!7.18e-11!69;UBERON:0006238!7.18e-11!69;UBERON:0001801!1.75e-10!14;UBERON:0005085!2.08e-10!29;UBERON:0002616!4.21e-10!59;UBERON:0000063!6.04e-10!97;UBERON:0001017!6.26e-10!82;UBERON:0002148!1.81e-09!2;UBERON:0009662!1.81e-09!2;UBERON:0000966!2.20e-08!5;UBERON:0005388!2.20e-08!5;UBERON:0001802!2.20e-08!5;UBERON:0000062!8.43e-08!511;UBERON:0002308!1.85e-07!9;UBERON:0000125!1.85e-07!9;UBERON:0001444!6.01e-07!48|ontology_enrichment_uberon_v019=UBERON:0002506;6.72e-26;1!UBERON:0001769;6.72e-26;1!UBERON:0007625;1.02e-20;11!UBERON:0000019;2.56e-12;19!UBERON:0000047;2.56e-12;19!UBERON:0004088;2.56e-12;19!UBERON:0010230;2.56e-12;19!UBERON:0000970;9.76e-12;20!UBERON:0002104;3.28e-11;21!UBERON:0001456;3.28e-11;21!UBERON:0000020;2.70e-10;23!UBERON:0001032;6.80e-10;24!UBERON:0004456;6.80e-10;24!UBERON:0001781;1.74e-09;3!UBERON:0001782;1.74e-09;3!UBERON:0010371;4.82e-08;31!UBERON:0001801;5.36e-08;14!UBERON:0001052;1.54e-07;4!UBERON:0000488;1.75e-07;4!UBERON:0010077;1.98e-07;4!UBERON:0005389;1.98e-07;4!UBERON:0000484;1.98e-07;4!UBERON:0000965;1.98e-07;4!UBERON:0001803;1.98e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0002506,5.93e-26,1;UBERON:0001769,5.93e-26,1;UBERON:0007625,9.82e-21,11;UBERON:0000019,9.59e-12,20;UBERON:0000047,9.59e-12,20;UBERON:0010312,9.59e-12,20;UBERON:0004088,9.59e-12,20;UBERON:0010230,9.59e-12,20;UBERON:0003072,9.59e-12,20;UBERON:0004128,9.59e-12,20;UBERON:0003071,9.59e-12,20;UBERON:0000970,3.22e-11,21;UBERON:0002104,3.22e-11,21;UBERON:0001456,9.70e-11,22;UBERON:0000020,6.69e-10,24;UBERON:0001032,6.69e-10,24;UBERON:0004456,6.69e-10,24;UBERON:0001782,1.67e-09,3;UBERON:0005424,1.67e-09,3;UBERON:0001801,5.36e-08,14;UBERON:0005085,8.28e-08,31;UBERON:0001052,1.49e-07,4;UBERON:0000488,1.69e-07,4;UBERON:0001781,1.92e-07,4;UBERON:0010077,2.04e-07,4;UBERON:0005389,2.04e-07,4;UBERON:0000484,2.04e-07,4;UBERON:0002546,2.04e-07,4;UBERON:0000965,2.04e-07,4;UBERON:0001803,2.04e-07,4;UBERON:0003073,2.04e-07,4;UBERON:0005426,2.04e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945348171640679,0.443458794925128,0.263504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,2.74508496477641,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7164 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12006 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-254bp_to_ENST00000524679_5end | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_12_at_TPD52L1_5end | |||
|id=chr6:125540724..125540736,+ | |||
|ontology_enrichment_celltype=CL:0000064!1.52e-13!3;CL:0005012!1.52e-13!3;CL:0000067!1.52e-13!3;CL:0002304!1.52e-13!3 | |||
|ontology_enrichment_celltype_v019=CL:0000342;6.72e-26;1!CL:0002565;6.72e-26;1!CL:0002586;1.74e-09;3!CL:0000147;5.36e-08;14!CL:0000306;1.98e-07;4!CL:0002222;1.98e-07;4!CL:0000149;1.98e-07;4!CL:0002224;1.98e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000342,5.93e-26,1;CL:0002565,5.93e-26,1;CL:0002586,1.67e-09,3;CL:0000147,5.18e-08,14;CL:0000149,1.92e-07,4;CL:0000306,2.04e-07,4;CL:0002222,2.04e-07,4;CL:0002224,2.04e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;4.11e-08;14!DOID:5409;1.31e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,4.04e-08,14;DOID:5409,1.31e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002298!7.31e-25!8;UBERON:0007625!8.90e-24!11;UBERON:0003075!1.62e-21!86;UBERON:0007284!1.62e-21!86;UBERON:0002346!2.57e-20!90;UBERON:0000970!1.78e-19!20;UBERON:0002104!1.88e-18!21;UBERON:0000488!1.03e-17!4;UBERON:0000033!1.73e-17!123;UBERON:0000019!9.08e-17!19;UBERON:0000047!9.08e-17!19;UBERON:0004088!9.08e-17!19;UBERON:0003072!9.08e-17!19;UBERON:0003071!9.08e-17!19;UBERON:0004128!9.08e-17!19;UBERON:0000020!1.13e-16!23;UBERON:0000153!2.15e-16!129;UBERON:0007811!2.15e-16!129;UBERON:0001032!6.80e-16!24;UBERON:0004456!6.80e-16!24;UBERON:0003056!3.41e-15!61;UBERON:0001456!5.20e-15!21;UBERON:0005743!1.01e-13!86;UBERON:0001896!1.34e-13!3;UBERON:0005290!1.34e-13!3;UBERON:0010096!1.34e-13!3;UBERON:0001778!1.52e-13!3;UBERON:0001775!1.52e-13!3;UBERON:0006331!2.86e-13!3;UBERON:0007023!4.46e-13!115;UBERON:0000988!6.30e-13!3;UBERON:0003076!9.77e-13!15;UBERON:0003057!9.77e-13!15;UBERON:0001049!2.98e-12!57;UBERON:0005068!2.98e-12!57;UBERON:0006241!2.98e-12!57;UBERON:0007135!2.98e-12!57;UBERON:0004733!4.50e-12!12;UBERON:0002028!4.50e-12!12;UBERON:0007277!4.50e-12!12;UBERON:0004121!4.62e-12!169;UBERON:0000073!5.09e-12!94;UBERON:0001016!5.09e-12!94;UBERON:0002203!7.79e-12!6;UBERON:0001768!7.79e-12!6;UBERON:0000924!1.22e-11!173;UBERON:0006601!1.22e-11!173;UBERON:0004732!4.28e-11!13;UBERON:0000955!7.18e-11!69;UBERON:0006238!7.18e-11!69;UBERON:0001801!1.75e-10!14;UBERON:0005085!2.08e-10!29;UBERON:0002616!4.21e-10!59;UBERON:0000063!6.04e-10!97;UBERON:0001017!6.26e-10!82;UBERON:0002148!1.81e-09!2;UBERON:0009662!1.81e-09!2;UBERON:0000966!2.20e-08!5;UBERON:0005388!2.20e-08!5;UBERON:0001802!2.20e-08!5;UBERON:0000062!8.43e-08!511;UBERON:0002308!1.85e-07!9;UBERON:0000125!1.85e-07!9;UBERON:0001444!6.01e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0002506;6.72e-26;1!UBERON:0001769;6.72e-26;1!UBERON:0007625;1.02e-20;11!UBERON:0000019;2.56e-12;19!UBERON:0000047;2.56e-12;19!UBERON:0004088;2.56e-12;19!UBERON:0010230;2.56e-12;19!UBERON:0000970;9.76e-12;20!UBERON:0002104;3.28e-11;21!UBERON:0001456;3.28e-11;21!UBERON:0000020;2.70e-10;23!UBERON:0001032;6.80e-10;24!UBERON:0004456;6.80e-10;24!UBERON:0001781;1.74e-09;3!UBERON:0001782;1.74e-09;3!UBERON:0010371;4.82e-08;31!UBERON:0001801;5.36e-08;14!UBERON:0001052;1.54e-07;4!UBERON:0000488;1.75e-07;4!UBERON:0010077;1.98e-07;4!UBERON:0005389;1.98e-07;4!UBERON:0000484;1.98e-07;4!UBERON:0000965;1.98e-07;4!UBERON:0001803;1.98e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002506,5.93e-26,1;UBERON:0001769,5.93e-26,1;UBERON:0007625,9.82e-21,11;UBERON:0000019,9.59e-12,20;UBERON:0000047,9.59e-12,20;UBERON:0010312,9.59e-12,20;UBERON:0004088,9.59e-12,20;UBERON:0010230,9.59e-12,20;UBERON:0003072,9.59e-12,20;UBERON:0004128,9.59e-12,20;UBERON:0003071,9.59e-12,20;UBERON:0000970,3.22e-11,21;UBERON:0002104,3.22e-11,21;UBERON:0001456,9.70e-11,22;UBERON:0000020,6.69e-10,24;UBERON:0001032,6.69e-10,24;UBERON:0004456,6.69e-10,24;UBERON:0001782,1.67e-09,3;UBERON:0005424,1.67e-09,3;UBERON:0001801,5.36e-08,14;UBERON:0005085,8.28e-08,31;UBERON:0001052,1.49e-07,4;UBERON:0000488,1.69e-07,4;UBERON:0001781,1.92e-07,4;UBERON:0010077,2.04e-07,4;UBERON:0005389,2.04e-07,4;UBERON:0000484,2.04e-07,4;UBERON:0002546,2.04e-07,4;UBERON:0000965,2.04e-07,4;UBERON:0001803,2.04e-07,4;UBERON:0003073,2.04e-07,4;UBERON:0005426,2.04e-07,4 | |||
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|short_description=p12@TPD52L1 | |||
}} |
Revision as of 17:48, 13 September 2013
Short description: | p12@TPD52L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_TPD52L1_5end |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | -254bp_to_ENST00000524679_5end |
EntrezGene: | TPD52L1 |
HGNC: | 12006 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell (sensu Vertebrata) | 5.93e-26 | 1 |
iris pigment epithelial cell | 5.93e-26 | 1 |
retinal pigment epithelial cell | 1.67e-09 | 3 |
pigment cell | 5.18e-08 | 14 |
visual pigment cell | 1.92e-07 | 4 |
crystallin accumulating cell | 2.04e-07 | 4 |
vertebrate lens cell | 2.04e-07 | 4 |
lens epithelial cell | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
iris epithelium | 5.93e-26 | 1 |
iris | 5.93e-26 | 1 |
pigment epithelium of eye | 9.82e-21 | 11 |
camera-type eye | 9.59e-12 | 20 |
simple eye | 9.59e-12 | 20 |
immature eye | 9.59e-12 | 20 |
ocular region | 9.59e-12 | 20 |
eyeball of camera-type eye | 9.59e-12 | 20 |
optic cup | 9.59e-12 | 20 |
optic vesicle | 9.59e-12 | 20 |
eye primordium | 9.59e-12 | 20 |
eye | 3.22e-11 | 21 |
visual system | 3.22e-11 | 21 |
face | 9.70e-11 | 22 |
sense organ | 6.69e-10 | 24 |
sensory system | 6.69e-10 | 24 |
entire sense organ system | 6.69e-10 | 24 |
pigmented layer of retina | 1.67e-09 | 3 |
presumptive retinal pigmented epithelium | 1.67e-09 | 3 |
anterior segment of eyeball | 5.36e-08 | 14 |
ectodermal placode | 8.28e-08 | 31 |
rectum | 1.49e-07 | 4 |
atypical epithelium | 1.69e-07 | 4 |
layer of retina | 1.92e-07 | 4 |
cuboidal epithelium | 2.04e-07 | 4 |
transparent eye structure | 2.04e-07 | 4 |
simple cuboidal epithelium | 2.04e-07 | 4 |
cranial placode | 2.04e-07 | 4 |
lens of camera-type eye | 2.04e-07 | 4 |
epithelium of lens | 2.04e-07 | 4 |
lens placode | 2.04e-07 | 4 |
lens vesicle | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 4.04e-08 | 14 |
lung small cell carcinoma | 1.31e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.