FFCP PHASE1:Mm9::chr19:40662918..40662929,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=56454|HGNC=|MCL_coexpression_id=12|UniProt=|association_with_transcript=-5bp_to_ENSMUST00000134749_5end|description=CAGE_peak_4_at_Aldh18a1_5end|id=chr19:40662918..40662929,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002563,2.37e-07,9;CL:0002251,2.37e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.85e-14!43;UBERON:0005409!4.98e-11!59|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.10e-17,31;UBERON:0005409,6.56e-09,47;UBERON:0000344,1.56e-07,15;UBERON:0003350,2.37e-07,9;UBERON:0004808,2.37e-07,9;UBERON:0001277,2.37e-07,9|phase1_expression=0,1.04692622291808,0.454999239389536,4.53696316960245,2.00358291978539,1.51091344720701,1.16806320297763,0.258246646883153,1.12630977721333,0.468129052643987,0.856089841127525,0.398860794976682,0,0.0874204024189974,0.999329285446988,1.41732687172878,0,0.157731082679119,0,0,0.0850432901510698,0.695036658406197,0,1.59992422793407,1.37645568640302,1.14846392823004,1.7230479846363,2.15471232685889,0.570070258369122,0.504060259519861,0,1.90509202037889,3.07532393792285,0,1.73310971850765,1.49611180822643,2.45003227514843,0,0,0,0,0,0,0.629484089877886,0.304130793658544,0.183546752161682,0.782391344348039,0.218025156380447,1.09843091367236,0.58328969722285,0.699932108126813,0,0.335565212115473,1.45072428402269,0,0.771778308107841,0.573066879877513,0.515672092277442,0.404632921719196,0,0.633831403506179,1.0165335962074,0.889294796111139,0,0,0,0.898800331555214,0.768436610643109,0.103689612308478,0.810035629990144,1.26194976810829,0.856952953211411,0.662605622854841,0.244981598429908,0.670918297127655,0.919218786610021,0,0.638436690425939,0.153606533256243,0.131886287730194,0.914876436024097,0.52091337055676,1.11673199600552,1.12552522006336,0.45839474333043,0.294628585473668,0.284743361598206,0.745597783301202,0.075726193333184,0.151143120213571,0.289864488701678,0,0,0,0,0,0.280888840263504,1.53387290320252,0,0,0.563373679106722,0,0,0,0.865964164044856,0.506719730950197,1.01104889002957,0.22836775943812,0.517875767294343,0.445326417194474,0.173485326766136,0.304465478312141,0.922461989024234,0.753613202763113,0.352766121407114,0.125666591329675,0.741584903203122,0.144599356919912,0.884610551949874,0.485300549842228,0.662524555381181,0.969750506270444,0,0,0.209446706813455,4.08731288333746,0.11981512450592,0,0.254140454146129,0.748953197024114,0.457500602818626,1.38219787324151,0.347648640384553,0,0.20778804455956,0.486723789203273,0.611036183101898,0.373220911830279,0.758168275301024,1.89397670297827,0.520481771850815,0.459804208866946,1.0803727788321,0.60281927134286,0.95251098811859,0.640568601424249,1.03071897015702,0.517406741478031,0.862271971731369,0.756424320671277,0.351902248327898,0.876782929710299,0.834141747676794,0.348252166522167,1.4404749548556,0.398068533636986,0,0,0,0.828503090142008,0.469052119962192,0.540186184383045,0.473489471170421,0.787056926989615,0.462801338662135,0.232533944750408,0,0.233530684734339,0.493679549740441,0.492502392237286,0.243206428637567,0.292399974850665,0,0.402619256281115,0,0.514523061896422,4.29544417878937,1.05780226665418,0.426576501070468,0.232236671860439,0.644337306610467,5.44545516483025,5.78182913996663,8.75037880117772,3.32170343081158,8.23494773620054,7.03738584640755,5.96869416123452,8.18849165900304,2.69645822596266,4.32276099749388,4.18196673834171,0.758671603812327,0.114248512609729,0,0.407302655690628,0.387904974335251,0.280543279561274,0.505892296994058,0.147610147979602,0.156998727841375,0.123397163921801,0,1.16791574001266,0.786235980452812,1.34917267430912,1.21716072833102,0.482354319504834,0.763877555344259,0,0.162135226775035,1.09824565275233,0,0.372140947668503,0.624075346229121,0,0.358794827043824,0.482443521363367,0.184753190166605,0.37898282354097,0.651859905768103,0,0,0.335012514883631,0.238043640886014,0,0.315270288212382,0,0.637819074629948,0.163863314715738,0.172684981865896,0.144649058581512,0,0,2.45882136509518,1.10374698521893,0.481651769963376,0.586058432961016,0.983609672260053,0,0,0.390438744296638,0.215423397732799,0.716906393857656,0.445597348164788,0,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.851640511249612,0.712262414669021,0.488660878060728,1.31976098378028,2.65490276679926,0.728341908464944,0.604647113929502,1.13163047853539,0.885905678642318,1.22974059177571,1.55056975900933,1.45413491791002,1.78248689192361,2.21225730555071,2.10837217149998,2.06271086496374,0.680879211507576,0,0.388076051348264,0.857348140126369,0.354680467284547,0.178368817602071,1.48094118541909,0.304464949114599,0.469343416127421,0.21183207086382,0.661585194164886,0.32977250588296,0.484393280087717,0.72375509913787,0.835606408021955,1.14898629821543,5.82961673259701,0.370850604021019,0.512612642393558,0.206386867963223,0.925972636848558,0.565105371014073,0.27338845544205,0.228778173206523,0,0.279902904647316,0.138199973804424,0,0.790839983952838,0.813277868507395,0.648032044930808,0.209088296014469,0.436725127492355,0.539457385539283,0.991841468704031,0.785267825952089,0.518459893167171,1.86401793926078,0,0,0.66183396182839,0.972255941720238,0,0.675824501963113,0.704143431874524,0.781226309063701,0.419437377702843,0.724752362478018,0.864090018773596,0,0.810900861160657,0.513554785824136,0,1.25318686967237,0.596044064343795,0.480781798079875,0.147689527174577,0.605798699688886,0.228620419965,0.403304740547362,0.38983152295901,0.288635524920988,0.116876902181569,0.453460767230423,0.221985953374065,0.448569283047378,0.503653849092235,0.579568782096571,0.93841237725591,0.915758121336325,1.2862102744744,1.50471631210609,1.12950368523413,0,0.572895513439397,0.515559547031063,0,1.5107877947794,0,0,0.453142408984205,1.03552062350364,0.31136204275253,0,0.512200817262403,0.243106717068294,0.628839487883947,0.919217542250071,1.55572709461131,0.618105171716683,1.28367683836726,0.505394423527595,1.01391719956096,1.32038438970253,0.655490552289177,0.512201219238954,0.402048282689293,0,1.27472758539341,0.38581844092741,0.824171801606613,1.17759136107518,0.685738504770831,0.887379030796687,0.476872379894642,0.872078499793971,1.12931256498397,1.09998990259179,0.914639864363863,0.526139422875686,1.35804113845862,1.68342681497322,0.830445126869219,1.28055827088233,0.818462086339379,0.309873682371932,0.964533054905707,1.49886346762768,1.87145286756327,1.28922632428979,0.191288332068843,0.441182838239031,1.15933917810211|short_description=p4@Aldh18a1}} | ||
|EntrezGene=56454 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENSMUST00000134749_5end | |||
|description=CAGE_peak_4_at_Aldh18a1_5end | |||
|id=chr19:40662918..40662929,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.37e-07,9;CL:0002251,2.37e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.85e-14!43;UBERON:0005409!4.98e-11!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.10e-17,31;UBERON:0005409,6.56e-09,47;UBERON:0000344,1.56e-07,15;UBERON:0003350,2.37e-07,9;UBERON:0004808,2.37e-07,9;UBERON:0001277,2.37e-07,9 | |||
|phase1_expression=0,1.04692622291808,0.454999239389536,4.53696316960245,2.00358291978539,1.51091344720701,1.16806320297763,0.258246646883153,1.12630977721333,0.468129052643987,0.856089841127525,0.398860794976682,0,0.0874204024189974,0.999329285446988,1.41732687172878,0,0.157731082679119,0,0,0.0850432901510698,0.695036658406197,0,1.59992422793407,1.37645568640302,1.14846392823004,1.7230479846363,2.15471232685889,0.570070258369122,0.504060259519861,0,1.90509202037889,3.07532393792285,0,1.73310971850765,1.49611180822643,2.45003227514843,0,0,0,0,0,0,0.629484089877886,0.304130793658544,0.183546752161682,0.782391344348039,0.218025156380447,1.09843091367236,0.58328969722285,0.699932108126813,0,0.335565212115473,1.45072428402269,0,0.771778308107841,0.573066879877513,0.515672092277442,0.404632921719196,0,0.633831403506179,1.0165335962074,0.889294796111139,0,0,0,0.898800331555214,0.768436610643109,0.103689612308478,0.810035629990144,1.26194976810829,0.856952953211411,0.662605622854841,0.244981598429908,0.670918297127655,0.919218786610021,0,0.638436690425939,0.153606533256243,0.131886287730194,0.914876436024097,0.52091337055676,1.11673199600552,1.12552522006336,0.45839474333043,0.294628585473668,0.284743361598206,0.745597783301202,0.075726193333184,0.151143120213571,0.289864488701678,0,0,0,0,0,0.280888840263504,1.53387290320252,0,0,0.563373679106722,0,0,0,0.865964164044856,0.506719730950197,1.01104889002957,0.22836775943812,0.517875767294343,0.445326417194474,0.173485326766136,0.304465478312141,0.922461989024234,0.753613202763113,0.352766121407114,0.125666591329675,0.741584903203122,0.144599356919912,0.884610551949874,0.485300549842228,0.662524555381181,0.969750506270444,0,0,0.209446706813455,4.08731288333746,0.11981512450592,0,0.254140454146129,0.748953197024114,0.457500602818626,1.38219787324151,0.347648640384553,0,0.20778804455956,0.486723789203273,0.611036183101898,0.373220911830279,0.758168275301024,1.89397670297827,0.520481771850815,0.459804208866946,1.0803727788321,0.60281927134286,0.95251098811859,0.640568601424249,1.03071897015702,0.517406741478031,0.862271971731369,0.756424320671277,0.351902248327898,0.876782929710299,0.834141747676794,0.348252166522167,1.4404749548556,0.398068533636986,0,0,0,0.828503090142008,0.469052119962192,0.540186184383045,0.473489471170421,0.787056926989615,0.462801338662135,0.232533944750408,0,0.233530684734339,0.493679549740441,0.492502392237286,0.243206428637567,0.292399974850665,0,0.402619256281115,0,0.514523061896422,4.29544417878937,1.05780226665418,0.426576501070468,0.232236671860439,0.644337306610467,5.44545516483025,5.78182913996663,8.75037880117772,3.32170343081158,8.23494773620054,7.03738584640755,5.96869416123452,8.18849165900304,2.69645822596266,4.32276099749388,4.18196673834171,0.758671603812327,0.114248512609729,0,0.407302655690628,0.387904974335251,0.280543279561274,0.505892296994058,0.147610147979602,0.156998727841375,0.123397163921801,0,1.16791574001266,0.786235980452812,1.34917267430912,1.21716072833102,0.482354319504834,0.763877555344259,0,0.162135226775035,1.09824565275233,0,0.372140947668503,0.624075346229121,0,0.358794827043824,0.482443521363367,0.184753190166605,0.37898282354097,0.651859905768103,0,0,0.335012514883631,0.238043640886014,0,0.315270288212382,0,0.637819074629948,0.163863314715738,0.172684981865896,0.144649058581512,0,0,2.45882136509518,1.10374698521893,0.481651769963376,0.586058432961016,0.983609672260053,0,0,0.390438744296638,0.215423397732799,0.716906393857656,0.445597348164788,0,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.851640511249612,0.712262414669021,0.488660878060728,1.31976098378028,2.65490276679926,0.728341908464944,0.604647113929502,1.13163047853539,0.885905678642318,1.22974059177571,1.55056975900933,1.45413491791002,1.78248689192361,2.21225730555071,2.10837217149998,2.06271086496374,0.680879211507576,0,0.388076051348264,0.857348140126369,0.354680467284547,0.178368817602071,1.48094118541909,0.304464949114599,0.469343416127421,0.21183207086382,0.661585194164886,0.32977250588296,0.484393280087717,0.72375509913787,0.835606408021955,1.14898629821543,5.82961673259701,0.370850604021019,0.512612642393558,0.206386867963223,0.925972636848558,0.565105371014073,0.27338845544205,0.228778173206523,0,0.279902904647316,0.138199973804424,0,0.790839983952838,0.813277868507395,0.648032044930808,0.209088296014469,0.436725127492355,0.539457385539283,0.991841468704031,0.785267825952089,0.518459893167171,1.86401793926078,0,0,0.66183396182839,0.972255941720238,0,0.675824501963113,0.704143431874524,0.781226309063701,0.419437377702843,0.724752362478018,0.864090018773596,0,0.810900861160657,0.513554785824136,0,1.25318686967237,0.596044064343795,0.480781798079875,0.147689527174577,0.605798699688886,0.228620419965,0.403304740547362,0.38983152295901,0.288635524920988,0.116876902181569,0.453460767230423,0.221985953374065,0.448569283047378,0.503653849092235,0.579568782096571,0.93841237725591,0.915758121336325,1.2862102744744,1.50471631210609,1.12950368523413,0,0.572895513439397,0.515559547031063,0,1.5107877947794,0,0,0.453142408984205,1.03552062350364,0.31136204275253,0,0.512200817262403,0.243106717068294,0.628839487883947,0.919217542250071,1.55572709461131,0.618105171716683,1.28367683836726,0.505394423527595,1.01391719956096,1.32038438970253,0.655490552289177,0.512201219238954,0.402048282689293,0,1.27472758539341,0.38581844092741,0.824171801606613,1.17759136107518,0.685738504770831,0.887379030796687,0.476872379894642,0.872078499793971,1.12931256498397,1.09998990259179,0.914639864363863,0.526139422875686,1.35804113845862,1.68342681497322,0.830445126869219,1.28055827088233,0.818462086339379,0.309873682371932,0.964533054905707,1.49886346762768,1.87145286756327,1.28922632428979,0.191288332068843,0.441182838239031,1.15933917810211 | |||
|short_description=p4@Aldh18a1 | |||
}} | |||
Revision as of 17:35, 13 September 2013
| Short description: | p4@Aldh18a1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Aldh18a1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:12 |
| Association with transcript: | -5bp_to_ENSMUST00000134749_5end |
| EntrezGene: | Aldh18a1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 2.37e-07 | 9 |
| epithelial cell of alimentary canal | 2.37e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 2.10e-17 | 31 |
| gastrointestinal system | 6.56e-09 | 47 |
| mucosa | 1.56e-07 | 15 |
| epithelium of mucosa | 2.37e-07 | 9 |
| gastrointestinal system epithelium | 2.37e-07 | 9 |
| intestinal epithelium | 2.37e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
