FFCP PHASE1:Mm9::chr18:78402628..78402656,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=27411|HGNC=|MCL_coexpression_id=1169|UniProt=Q80VG5|association_with_transcript=0bp_to_uc012bfg.1_5end|description=CAGE_peak_4_at_Slc14a2_5end|id=chr18:78402628..78402656,-|ontology_enrichment_celltype=CL:0000117!4.64e-20!23;CL:0000337!4.64e-20!23;CL:0002319!6.40e-15!43;CL:0000221!2.33e-14!44;CL:0000133!2.33e-14!44;CL:0000540!9.15e-13!33;CL:0000047!9.15e-13!33;CL:0000031!9.15e-13!33;CL:0000404!9.15e-13!33;CL:0000055!1.71e-11!50;CL:0000393!1.19e-09!39;CL:0000211!1.19e-09!39;CL:0002609!2.26e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,7.46e-20,23;CL:0000337,7.46e-20,23;CL:0002319,2.53e-14,43;CL:0000221,6.60e-14,44;CL:0000133,6.60e-14,44;CL:0000540,7.35e-13,33;CL:0000047,7.35e-13,33;CL:0000031,7.35e-13,33;CL:0000404,7.35e-13,33;CL:0002609,1.56e-10,6;CL:0000393,2.14e-10,39;CL:0000211,2.14e-10,39;CL:0002613,2.05e-09,3;CL:0000120,3.56e-09,3;CL:0002321,2.69e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.49e-19!73;UBERON:0005743!9.49e-19!73;UBERON:0000073!7.38e-18!75;UBERON:0001016!7.38e-18!75;UBERON:0001049!1.74e-16!52;UBERON:0005068!1.74e-16!52;UBERON:0006241!1.74e-16!52;UBERON:0007135!1.74e-16!52;UBERON:0002616!6.44e-13!49;UBERON:0000955!1.83e-12!50;UBERON:0006238!1.83e-12!50;UBERON:0003080!4.81e-12!40;UBERON:0002780!1.63e-11!39;UBERON:0001890!1.63e-11!39;UBERON:0006240!1.63e-11!39;UBERON:0004121!3.34e-11!102;UBERON:0000924!3.34e-11!102;UBERON:0006601!3.34e-11!102;UBERON:0002020!1.06e-10!34;UBERON:0002346!2.09e-10!71;UBERON:0003075!2.09e-10!71;UBERON:0007284!2.09e-10!71;UBERON:0000033!3.10e-09!63;UBERON:0003056!4.99e-09!49;UBERON:0002420!8.36e-08!8;UBERON:0007245!8.36e-08!8;UBERON:0010009!8.36e-08!8;UBERON:0010011!8.36e-08!8;UBERON:0000454!8.36e-08!8;UBERON:0002791!3.50e-07!29;UBERON:0003528!3.50e-07!29;UBERON:0001893!3.50e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-11,73;UBERON:0001016,3.91e-11,75;UBERON:0002020,1.87e-10,34;UBERON:0001049,1.70e-09,52;UBERON:0005068,1.70e-09,52;UBERON:0006241,1.70e-09,52;UBERON:0007135,1.70e-09,52;UBERON:0000369,2.25e-09,5;UBERON:0002435,2.25e-09,5;UBERON:0000204,2.25e-09,5;UBERON:0010082,2.25e-09,5;UBERON:0000073,5.20e-09,54;UBERON:0004121,8.92e-08,95;UBERON:0000924,8.92e-08,95;UBERON:0006601,8.92e-08,95;UBERON:0003528,1.82e-07,29;UBERON:0002791,1.82e-07,29;UBERON:0001893,1.82e-07,29;UBERON:0002780,1.84e-07,39;UBERON:0001890,1.84e-07,39;UBERON:0006240,1.84e-07,39;UBERON:0003080,3.27e-07,40;UBERON:0002616,3.96e-07,46;UBERON:0002346,4.72e-07,64;UBERON:0003075,4.72e-07,64;UBERON:0007284,4.72e-07,64;UBERON:0000955,6.42e-07,47;UBERON:0006238,6.42e-07,47|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61630187656536,0.439372365468944,0,0.279972843250725,5.75010257459886,0,0,0,0,0,0,4.04632921719196,7.93486468908049,5.07065122804943,0,0,0,0,0,0.599200221036809,6.14749288514487,2.07379224616955,1.89008313664367,2.73422449756797,1.14260393761521,0.662605622854841,1.10241719293459,0.958454710182364,1.83843757322004,0,0.510749352340751,0.614426133024974,6.19865552331911,10.7955419450843,6.25096044668112,0.279182999001381,0.56276261003168,0.15279824777681,0.883885756421003,1.99320353118744,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449371918214468,0.457500602818626,2.1361239859187,0,0,0.62336413367868,0.486723789203273,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0.756424320671277,1.40760899331159,0.43839146485515,1.39023624612799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,16.5676425930648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.18006109403131,0.258717367565509,0,0.177340233642274,0.178368817602071,0.329098041204242,2.43571959291679,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,1.02440163452481,0.729320151204882,1.04806581313991,0.551530525350042,1.33348036680969,1.03017528619447,0.320919209591815,0.252697211763798,1.01391719956096,0.565879024158229,0.37456602987953,1.53660365771686,1.09127391015665,0.952587382566147,0.463537303779422,0.77163688185482,0.412085900803307,1.32479028120958,1.71434626192708,0.532427418478012,0.238436189947321,1.16277133305863,0.658765662907314,0.592302255241736,1.46342378298218,0.789209134313529,0.543216455383447,1.12228454331548,0.593175090620871,0.591026894253381,0.818462086339379,0.464810523557898,0.964533054905707,3.2475375131933,0.935726433781634,0.429742108096597,0,0,0|short_description=p4@Slc14a2}} | ||
|EntrezGene=27411 | |||
|HGNC= | |||
|MCL_coexpression_id=1169 | |||
|UniProt=Q80VG5 | |||
|association_with_transcript=0bp_to_uc012bfg.1_5end | |||
|description=CAGE_peak_4_at_Slc14a2_5end | |||
|id=chr18:78402628..78402656,- | |||
|ontology_enrichment_celltype=CL:0000117!4.64e-20!23;CL:0000337!4.64e-20!23;CL:0002319!6.40e-15!43;CL:0000221!2.33e-14!44;CL:0000133!2.33e-14!44;CL:0000540!9.15e-13!33;CL:0000047!9.15e-13!33;CL:0000031!9.15e-13!33;CL:0000404!9.15e-13!33;CL:0000055!1.71e-11!50;CL:0000393!1.19e-09!39;CL:0000211!1.19e-09!39;CL:0002609!2.26e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.46e-20,23;CL:0000337,7.46e-20,23;CL:0002319,2.53e-14,43;CL:0000221,6.60e-14,44;CL:0000133,6.60e-14,44;CL:0000540,7.35e-13,33;CL:0000047,7.35e-13,33;CL:0000031,7.35e-13,33;CL:0000404,7.35e-13,33;CL:0002609,1.56e-10,6;CL:0000393,2.14e-10,39;CL:0000211,2.14e-10,39;CL:0002613,2.05e-09,3;CL:0000120,3.56e-09,3;CL:0002321,2.69e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.49e-19!73;UBERON:0005743!9.49e-19!73;UBERON:0000073!7.38e-18!75;UBERON:0001016!7.38e-18!75;UBERON:0001049!1.74e-16!52;UBERON:0005068!1.74e-16!52;UBERON:0006241!1.74e-16!52;UBERON:0007135!1.74e-16!52;UBERON:0002616!6.44e-13!49;UBERON:0000955!1.83e-12!50;UBERON:0006238!1.83e-12!50;UBERON:0003080!4.81e-12!40;UBERON:0002780!1.63e-11!39;UBERON:0001890!1.63e-11!39;UBERON:0006240!1.63e-11!39;UBERON:0004121!3.34e-11!102;UBERON:0000924!3.34e-11!102;UBERON:0006601!3.34e-11!102;UBERON:0002020!1.06e-10!34;UBERON:0002346!2.09e-10!71;UBERON:0003075!2.09e-10!71;UBERON:0007284!2.09e-10!71;UBERON:0000033!3.10e-09!63;UBERON:0003056!4.99e-09!49;UBERON:0002420!8.36e-08!8;UBERON:0007245!8.36e-08!8;UBERON:0010009!8.36e-08!8;UBERON:0010011!8.36e-08!8;UBERON:0000454!8.36e-08!8;UBERON:0002791!3.50e-07!29;UBERON:0003528!3.50e-07!29;UBERON:0001893!3.50e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-11,73;UBERON:0001016,3.91e-11,75;UBERON:0002020,1.87e-10,34;UBERON:0001049,1.70e-09,52;UBERON:0005068,1.70e-09,52;UBERON:0006241,1.70e-09,52;UBERON:0007135,1.70e-09,52;UBERON:0000369,2.25e-09,5;UBERON:0002435,2.25e-09,5;UBERON:0000204,2.25e-09,5;UBERON:0010082,2.25e-09,5;UBERON:0000073,5.20e-09,54;UBERON:0004121,8.92e-08,95;UBERON:0000924,8.92e-08,95;UBERON:0006601,8.92e-08,95;UBERON:0003528,1.82e-07,29;UBERON:0002791,1.82e-07,29;UBERON:0001893,1.82e-07,29;UBERON:0002780,1.84e-07,39;UBERON:0001890,1.84e-07,39;UBERON:0006240,1.84e-07,39;UBERON:0003080,3.27e-07,40;UBERON:0002616,3.96e-07,46;UBERON:0002346,4.72e-07,64;UBERON:0003075,4.72e-07,64;UBERON:0007284,4.72e-07,64;UBERON:0000955,6.42e-07,47;UBERON:0006238,6.42e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61630187656536,0.439372365468944,0,0.279972843250725,5.75010257459886,0,0,0,0,0,0,4.04632921719196,7.93486468908049,5.07065122804943,0,0,0,0,0,0.599200221036809,6.14749288514487,2.07379224616955,1.89008313664367,2.73422449756797,1.14260393761521,0.662605622854841,1.10241719293459,0.958454710182364,1.83843757322004,0,0.510749352340751,0.614426133024974,6.19865552331911,10.7955419450843,6.25096044668112,0.279182999001381,0.56276261003168,0.15279824777681,0.883885756421003,1.99320353118744,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449371918214468,0.457500602818626,2.1361239859187,0,0,0.62336413367868,0.486723789203273,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0.756424320671277,1.40760899331159,0.43839146485515,1.39023624612799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,16.5676425930648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.18006109403131,0.258717367565509,0,0.177340233642274,0.178368817602071,0.329098041204242,2.43571959291679,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,1.02440163452481,0.729320151204882,1.04806581313991,0.551530525350042,1.33348036680969,1.03017528619447,0.320919209591815,0.252697211763798,1.01391719956096,0.565879024158229,0.37456602987953,1.53660365771686,1.09127391015665,0.952587382566147,0.463537303779422,0.77163688185482,0.412085900803307,1.32479028120958,1.71434626192708,0.532427418478012,0.238436189947321,1.16277133305863,0.658765662907314,0.592302255241736,1.46342378298218,0.789209134313529,0.543216455383447,1.12228454331548,0.593175090620871,0.591026894253381,0.818462086339379,0.464810523557898,0.964533054905707,3.2475375131933,0.935726433781634,0.429742108096597,0,0,0 | |||
|short_description=p4@Slc14a2 | |||
}} |
Revision as of 16:48, 13 September 2013
Short description: | p4@Slc14a2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Slc14a2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1169 |
Association with transcript: | 0bp_to_uc012bfg.1_5end |
EntrezGene: | Slc14a2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.46e-20 | 23 |
neuroblast (sensu Vertebrata) | 7.46e-20 | 23 |
neural cell | 2.53e-14 | 43 |
ectodermal cell | 6.60e-14 | 44 |
neurectodermal cell | 6.60e-14 | 44 |
neuron | 7.35e-13 | 33 |
neuronal stem cell | 7.35e-13 | 33 |
neuroblast | 7.35e-13 | 33 |
electrically signaling cell | 7.35e-13 | 33 |
neuron of cerebral cortex | 1.56e-10 | 6 |
electrically responsive cell | 2.14e-10 | 39 |
electrically active cell | 2.14e-10 | 39 |
striatum neuron | 2.05e-09 | 3 |
granule cell | 3.56e-09 | 3 |
embryonic cell | 2.69e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.42e-11 | 73 |
nervous system | 3.91e-11 | 75 |
gray matter | 1.87e-10 | 34 |
neural tube | 1.70e-09 | 52 |
neural rod | 1.70e-09 | 52 |
future spinal cord | 1.70e-09 | 52 |
neural keel | 1.70e-09 | 52 |
corpus striatum | 2.25e-09 | 5 |
striatum | 2.25e-09 | 5 |
ventral part of telencephalon | 2.25e-09 | 5 |
future corpus striatum | 2.25e-09 | 5 |
regional part of nervous system | 5.20e-09 | 54 |
ectoderm-derived structure | 8.92e-08 | 95 |
ectoderm | 8.92e-08 | 95 |
presumptive ectoderm | 8.92e-08 | 95 |
brain grey matter | 1.82e-07 | 29 |
regional part of telencephalon | 1.82e-07 | 29 |
telencephalon | 1.82e-07 | 29 |
regional part of forebrain | 1.84e-07 | 39 |
forebrain | 1.84e-07 | 39 |
future forebrain | 1.84e-07 | 39 |
anterior neural tube | 3.27e-07 | 40 |
regional part of brain | 3.96e-07 | 46 |
neurectoderm | 4.72e-07 | 64 |
neural plate | 4.72e-07 | 64 |
presumptive neural plate | 4.72e-07 | 64 |
brain | 6.42e-07 | 47 |
future brain | 6.42e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.