FFCP PHASE1:Hg19::chr5:70308745..70308754,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C789|description=CAGE_peak_at_chr5:70308745..70308754,-|id=chr5:70308745..70308754,-|ontology_enrichment_celltype=CL:0002586!7.42e-22!3;CL:0000149!1.55e-16!4;CL:0002619!5.49e-10!3|ontology_enrichment_celltype_v019=CL:0002586;1.16e-117;3!CL:0000149;1.41e-88;4!CL:0000147;4.10e-26;14!CL:0000775;1.50e-14;3|ontology_enrichment_celltype_v019_2=CL:0002586,1.16e-117,3;CL:0000149,1.41e-88,4;CL:0000147,4.10e-26,14;CL:0000775,1.22e-14,3|ontology_enrichment_development_v019=UBERON:0003056;1.50e-14;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000966!7.32e-23!5;UBERON:0005388!7.32e-23!5;UBERON:0001802!7.32e-23!5;UBERON:0001781!7.42e-22!3;UBERON:0001782!7.42e-22!3;UBERON:0005424!7.42e-22!3;UBERON:0001954!1.68e-14!2;UBERON:0003022!1.68e-14!2;UBERON:0002421!1.68e-14!2;UBERON:0002600!1.68e-14!2;UBERON:0005743!7.38e-09!86;UBERON:0000970!1.33e-08!20;UBERON:0002104!3.52e-08!21;UBERON:0000073!7.82e-08!94;UBERON:0001016!7.82e-08!94;UBERON:0002902!9.29e-08!1;UBERON:0009899!9.29e-08!1;UBERON:0007190!9.94e-08!1;UBERON:0000020!1.91e-07!23;UBERON:0001032!4.01e-07!24;UBERON:0004456!4.01e-07!24|ontology_enrichment_uberon_v019=UBERON:0000966;2.01e-125;5!UBERON:0005388;2.01e-125;5!UBERON:0001802;2.01e-125;5!UBERON:0001781;1.16e-117;3!UBERON:0001782;1.16e-117;3!UBERON:0000019;8.70e-34;19!UBERON:0000047;8.70e-34;19!UBERON:0004088;8.70e-34;19!UBERON:0010230;8.70e-34;19!UBERON:0007625;5.96e-33;11!UBERON:0000970;3.82e-32;20!UBERON:0002104;1.17e-30;21!UBERON:0001456;1.17e-30;21!UBERON:0000020;4.52e-28;23!UBERON:0001032;6.13e-27;24!UBERON:0004456;6.13e-27;24!UBERON:0000033;1.04e-12;50!UBERON:0010371;2.14e-11;31!UBERON:0001444;2.72e-11;48!UBERON:0007811;8.20e-08;52!UBERON:0000153;1.08e-07;54|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.16e-117,3;UBERON:0005424,1.16e-117,3;UBERON:0000966,1.51e-104,6;UBERON:0005388,1.51e-104,6;UBERON:0001802,1.51e-104,6;UBERON:0001781,1.41e-88,4;UBERON:0007625,5.96e-33,11;UBERON:0000019,4.31e-32,20;UBERON:0000047,4.31e-32,20;UBERON:0010312,4.31e-32,20;UBERON:0004088,4.31e-32,20;UBERON:0010230,4.31e-32,20;UBERON:0003072,4.31e-32,20;UBERON:0004128,4.31e-32,20;UBERON:0003071,4.31e-32,20;UBERON:0000970,1.31e-30,21;UBERON:0002104,1.31e-30,21;UBERON:0001456,2.94e-29,22;UBERON:0000020,6.78e-27,24;UBERON:0001032,6.78e-27,24;UBERON:0004456,6.78e-27,24;UBERON:0005085,5.13e-21,31;UBERON:0001444,1.40e-13,49;UBERON:0000033,5.68e-12,56;UBERON:0000153,7.02e-11,62;UBERON:0007811,7.02e-11,62;UBERON:0003056,7.02e-11,61;UBERON:0003075,2.75e-08,82;UBERON:0007284,2.75e-08,82;UBERON:0002346,6.20e-08,86|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3080511260475,1.96808787419823,2.27764876265012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.891547074219827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0.415440338029185,0.2249738915515,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665574309221114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475788130837822,0,0,0,0,0,0,0,0,0,2.07281978112303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.09189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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C789 | |||
|description=CAGE_peak_at_chr5:70308745..70308754,- | |||
|id=chr5:70308745..70308754,- | |||
|ontology_enrichment_celltype=CL:0002586!7.42e-22!3;CL:0000149!1.55e-16!4;CL:0002619!5.49e-10!3 | |||
|ontology_enrichment_celltype_v019=CL:0002586;1.16e-117;3!CL:0000149;1.41e-88;4!CL:0000147;4.10e-26;14!CL:0000775;1.50e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.16e-117,3;CL:0000149,1.41e-88,4;CL:0000147,4.10e-26,14;CL:0000775,1.22e-14,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.50e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!7.32e-23!5;UBERON:0005388!7.32e-23!5;UBERON:0001802!7.32e-23!5;UBERON:0001781!7.42e-22!3;UBERON:0001782!7.42e-22!3;UBERON:0005424!7.42e-22!3;UBERON:0001954!1.68e-14!2;UBERON:0003022!1.68e-14!2;UBERON:0002421!1.68e-14!2;UBERON:0002600!1.68e-14!2;UBERON:0005743!7.38e-09!86;UBERON:0000970!1.33e-08!20;UBERON:0002104!3.52e-08!21;UBERON:0000073!7.82e-08!94;UBERON:0001016!7.82e-08!94;UBERON:0002902!9.29e-08!1;UBERON:0009899!9.29e-08!1;UBERON:0007190!9.94e-08!1;UBERON:0000020!1.91e-07!23;UBERON:0001032!4.01e-07!24;UBERON:0004456!4.01e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.01e-125;5!UBERON:0005388;2.01e-125;5!UBERON:0001802;2.01e-125;5!UBERON:0001781;1.16e-117;3!UBERON:0001782;1.16e-117;3!UBERON:0000019;8.70e-34;19!UBERON:0000047;8.70e-34;19!UBERON:0004088;8.70e-34;19!UBERON:0010230;8.70e-34;19!UBERON:0007625;5.96e-33;11!UBERON:0000970;3.82e-32;20!UBERON:0002104;1.17e-30;21!UBERON:0001456;1.17e-30;21!UBERON:0000020;4.52e-28;23!UBERON:0001032;6.13e-27;24!UBERON:0004456;6.13e-27;24!UBERON:0000033;1.04e-12;50!UBERON:0010371;2.14e-11;31!UBERON:0001444;2.72e-11;48!UBERON:0007811;8.20e-08;52!UBERON:0000153;1.08e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.16e-117,3;UBERON:0005424,1.16e-117,3;UBERON:0000966,1.51e-104,6;UBERON:0005388,1.51e-104,6;UBERON:0001802,1.51e-104,6;UBERON:0001781,1.41e-88,4;UBERON:0007625,5.96e-33,11;UBERON:0000019,4.31e-32,20;UBERON:0000047,4.31e-32,20;UBERON:0010312,4.31e-32,20;UBERON:0004088,4.31e-32,20;UBERON:0010230,4.31e-32,20;UBERON:0003072,4.31e-32,20;UBERON:0004128,4.31e-32,20;UBERON:0003071,4.31e-32,20;UBERON:0000970,1.31e-30,21;UBERON:0002104,1.31e-30,21;UBERON:0001456,2.94e-29,22;UBERON:0000020,6.78e-27,24;UBERON:0001032,6.78e-27,24;UBERON:0004456,6.78e-27,24;UBERON:0005085,5.13e-21,31;UBERON:0001444,1.40e-13,49;UBERON:0000033,5.68e-12,56;UBERON:0000153,7.02e-11,62;UBERON:0007811,7.02e-11,62;UBERON:0003056,7.02e-11,61;UBERON:0003075,2.75e-08,82;UBERON:0007284,2.75e-08,82;UBERON:0002346,6.20e-08,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300353785683013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3080511260475,1.96808787419823,2.27764876265012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.891547074219827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0.415440338029185,0.2249738915515,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665574309221114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475788130837822,0,0,0,0,0,0,0,0,0,2.07281978112303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:70308745..70308754,- | |||
}} |
Revision as of 16:15, 13 September 2013
Short description: | p@chr5:70308745..70308754, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:70308745..70308754, - |
Coexpression cluster: | C789_retina_Retinal_medulla_stomach_lung_eye_corpus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.16e-117 | 3 |
visual pigment cell | 1.41e-88 | 4 |
pigment cell | 4.10e-26 | 14 |
neutrophil | 1.22e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.16e-117 | 3 |
presumptive retinal pigmented epithelium | 1.16e-117 | 3 |
retina | 1.51e-104 | 6 |
photoreceptor array | 1.51e-104 | 6 |
posterior segment of eyeball | 1.51e-104 | 6 |
layer of retina | 1.41e-88 | 4 |
pigment epithelium of eye | 5.96e-33 | 11 |
camera-type eye | 4.31e-32 | 20 |
simple eye | 4.31e-32 | 20 |
immature eye | 4.31e-32 | 20 |
ocular region | 4.31e-32 | 20 |
eyeball of camera-type eye | 4.31e-32 | 20 |
optic cup | 4.31e-32 | 20 |
optic vesicle | 4.31e-32 | 20 |
eye primordium | 4.31e-32 | 20 |
eye | 1.31e-30 | 21 |
visual system | 1.31e-30 | 21 |
face | 2.94e-29 | 22 |
sense organ | 6.78e-27 | 24 |
sensory system | 6.78e-27 | 24 |
entire sense organ system | 6.78e-27 | 24 |
ectodermal placode | 5.13e-21 | 31 |
subdivision of head | 1.40e-13 | 49 |
head | 5.68e-12 | 56 |
anterior region of body | 7.02e-11 | 62 |
craniocervical region | 7.02e-11 | 62 |
pre-chordal neural plate | 7.02e-11 | 61 |
neural plate | 2.75e-08 | 82 |
presumptive neural plate | 2.75e-08 | 82 |
neurectoderm | 6.20e-08 | 86 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.