FFCP PHASE1:Hg19::chr5:32711398..32711403,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4883|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7945|TSSclassifier=S|UniProt=P17342,Q60I31,A8K4A5|association_with_transcript=-34bp_to_NM_000908,NM_001204375_5end|coexpression_cluster_id=C1959|description=CAGE_peak_14_at_NPR3_5end|id=chr5:32711398..32711403,+|ontology_enrichment_celltype=CL:0000055!2.45e-09!180;CL:0000057!1.53e-08!75;CL:0002620!5.44e-08!23;CL:0000136!9.41e-07!15|ontology_enrichment_celltype_v019=CL:0000136;4.28e-13;13!CL:0002615;1.31e-11;3!CL:0000197;6.36e-11;6!CL:0000098;6.36e-11;6!CL:0002167;6.36e-11;6!CL:0000153;2.23e-10;9!CL:0000447;2.23e-10;9!CL:0002195;5.09e-09;2!CL:0002571;5.09e-09;2!CL:0002561;7.54e-09;2!CL:0002617;1.18e-08;2!CL:0002602;2.68e-08;2|ontology_enrichment_celltype_v019_2=CL:0002615,2.06e-11,3;CL:0000136,2.52e-11,15;CL:0000197,6.98e-11,6;CL:0000098,6.98e-11,6;CL:0002167,6.98e-11,6;CL:0000153,3.15e-10,9;CL:0000447,3.15e-10,9;CL:0002195,4.53e-09,2;CL:0002571,4.53e-09,2;CL:0002561,7.28e-09,2;CL:0002617,7.28e-09,2;CL:0002602,1.71e-08,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0004905;1.74e-16;8!UBERON:0000982;1.74e-16;8!UBERON:0004770;1.74e-16;8!UBERON:0011135;1.66e-12;5!UBERON:0002216;1.66e-12;5!UBERON:0011134;1.66e-12;5!UBERON:0002209;1.66e-12;5!UBERON:0002213;1.66e-12;5!UBERON:0007844;1.66e-12;5!UBERON:0011138;1.66e-12;5!UBERON:0001130;1.66e-12;5!UBERON:0001066;1.66e-12;5!UBERON:0001468;1.66e-12;5!UBERON:0000075;7.88e-11;16!UBERON:0004457;5.29e-10;9!UBERON:0000042;5.29e-10;9!UBERON:0001905;2.63e-09;2!UBERON:0002757;2.63e-09;2!UBERON:0010134;2.63e-09;2!UBERON:0005408;2.63e-09;2!UBERON:0001899;2.63e-09;2!UBERON:0005933;7.54e-09;2!UBERON:0005942;7.54e-09;2!UBERON:0005932;7.54e-09;2!UBERON:0006444;2.68e-08;2!UBERON:0001995;2.68e-08;2!UBERON:0004715;2.68e-08;2!UBERON:0001434;3.32e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0004905,1.80e-16,8;UBERON:0000982,1.80e-16,8;UBERON:0004770,1.80e-16,8;UBERON:0011135,1.39e-12,5;UBERON:0002216,1.39e-12,5;UBERON:0011134,1.39e-12,5;UBERON:0002209,1.39e-12,5;UBERON:0002213,1.39e-12,5;UBERON:0005856,1.39e-12,5;UBERON:0005866,1.39e-12,5;UBERON:0005863,1.39e-12,5;UBERON:0007844,1.39e-12,5;UBERON:0011138,1.39e-12,5;UBERON:0001130,1.39e-12,5;UBERON:0001066,1.39e-12,5;UBERON:0001468,1.39e-12,5;UBERON:0000075,5.69e-11,16;UBERON:0001905,2.29e-09,2;UBERON:0002757,2.29e-09,2;UBERON:0010134,2.29e-09,2;UBERON:0005408,2.29e-09,2;UBERON:0001899,2.29e-09,2;UBERON:0005933,7.28e-09,2;UBERON:0005942,7.28e-09,2;UBERON:0005932,7.28e-09,2;UBERON:0006444,1.71e-08,2;UBERON:0001995,1.71e-08,2;UBERON:0004715,1.71e-08,2;UBERON:0004457,2.58e-07,12;UBERON:0000042,2.58e-07,12;UBERON:0011137,8.62e-07,14|phase1_expression=1.81678379270557,2.5692062866918,1.12763523276777,1.0007329835313,1.78784437770915,0.872338524100369,0,0,0,0,0,0,0,1.98026164736075,1.32558950291166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,1.44575660953827,2.00535164254356,2.31754430337318,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.264818361626438,2.58152958673932,0,2.24271040056923,0,0.74000264525148,0,0,0,0.302714855289863,0,0.234321431833797,0,0,0,0,0,0,0,0,0.206651562351531,0,0.494533858557114,0,0,0,0,0,0,1.83892677479412,1.50238058906597,0,0.538168907066586,0.427114777637135,0.635795703478686,0.900273288253207,0.618315175430633,0.515281080091258,0.37223371266318,4.05063197379039,2.92311015483596,0.252433774244115,0.920498986422993,1.45481451136931,1.77504796258307,0.806016785821122,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,3.71494342425583,1.44375896333917,0,0,0.482022059766964,0.110293972732394,0.653638332277218,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0,2.43062589218851,0,0,0,2.84313558994037,0,0,0,0,0,0,0,0.239624855491583,3.44585807502342,0,1.01346914667305,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.20844685094452,0,2.44138521329762,1.24782516918484,3.92543775353756,3.46945313074656,2.45996971484698,1.20378439891088,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,1.07423381301644,0.280660094433074,0.512556597022804,0,0,2.96836132889982,0,0,0.164254312027618,0,0,0,0,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.770243085573222,0,0.137836572484531,0.966782203814463,0.870100163485371,0.0852266274161009,0.08903203564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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4883 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7945 | |||
|TSSclassifier=S | |||
|UniProt=P17342,Q60I31,A8K4A5 | |||
|association_with_transcript=-34bp_to_NM_000908,NM_001204375_5end | |||
|coexpression_cluster_id=C1959 | |||
|description=CAGE_peak_14_at_NPR3_5end | |||
|id=chr5:32711398..32711403,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.45e-09!180;CL:0000057!1.53e-08!75;CL:0002620!5.44e-08!23;CL:0000136!9.41e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;4.28e-13;13!CL:0002615;1.31e-11;3!CL:0000197;6.36e-11;6!CL:0000098;6.36e-11;6!CL:0002167;6.36e-11;6!CL:0000153;2.23e-10;9!CL:0000447;2.23e-10;9!CL:0002195;5.09e-09;2!CL:0002571;5.09e-09;2!CL:0002561;7.54e-09;2!CL:0002617;1.18e-08;2!CL:0002602;2.68e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,2.06e-11,3;CL:0000136,2.52e-11,15;CL:0000197,6.98e-11,6;CL:0000098,6.98e-11,6;CL:0002167,6.98e-11,6;CL:0000153,3.15e-10,9;CL:0000447,3.15e-10,9;CL:0002195,4.53e-09,2;CL:0002571,4.53e-09,2;CL:0002561,7.28e-09,2;CL:0002617,7.28e-09,2;CL:0002602,1.71e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;1.74e-16;8!UBERON:0000982;1.74e-16;8!UBERON:0004770;1.74e-16;8!UBERON:0011135;1.66e-12;5!UBERON:0002216;1.66e-12;5!UBERON:0011134;1.66e-12;5!UBERON:0002209;1.66e-12;5!UBERON:0002213;1.66e-12;5!UBERON:0007844;1.66e-12;5!UBERON:0011138;1.66e-12;5!UBERON:0001130;1.66e-12;5!UBERON:0001066;1.66e-12;5!UBERON:0001468;1.66e-12;5!UBERON:0000075;7.88e-11;16!UBERON:0004457;5.29e-10;9!UBERON:0000042;5.29e-10;9!UBERON:0001905;2.63e-09;2!UBERON:0002757;2.63e-09;2!UBERON:0010134;2.63e-09;2!UBERON:0005408;2.63e-09;2!UBERON:0001899;2.63e-09;2!UBERON:0005933;7.54e-09;2!UBERON:0005942;7.54e-09;2!UBERON:0005932;7.54e-09;2!UBERON:0006444;2.68e-08;2!UBERON:0001995;2.68e-08;2!UBERON:0004715;2.68e-08;2!UBERON:0001434;3.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,1.80e-16,8;UBERON:0000982,1.80e-16,8;UBERON:0004770,1.80e-16,8;UBERON:0011135,1.39e-12,5;UBERON:0002216,1.39e-12,5;UBERON:0011134,1.39e-12,5;UBERON:0002209,1.39e-12,5;UBERON:0002213,1.39e-12,5;UBERON:0005856,1.39e-12,5;UBERON:0005866,1.39e-12,5;UBERON:0005863,1.39e-12,5;UBERON:0007844,1.39e-12,5;UBERON:0011138,1.39e-12,5;UBERON:0001130,1.39e-12,5;UBERON:0001066,1.39e-12,5;UBERON:0001468,1.39e-12,5;UBERON:0000075,5.69e-11,16;UBERON:0001905,2.29e-09,2;UBERON:0002757,2.29e-09,2;UBERON:0010134,2.29e-09,2;UBERON:0005408,2.29e-09,2;UBERON:0001899,2.29e-09,2;UBERON:0005933,7.28e-09,2;UBERON:0005942,7.28e-09,2;UBERON:0005932,7.28e-09,2;UBERON:0006444,1.71e-08,2;UBERON:0001995,1.71e-08,2;UBERON:0004715,1.71e-08,2;UBERON:0004457,2.58e-07,12;UBERON:0000042,2.58e-07,12;UBERON:0011137,8.62e-07,14 | |||
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|short_description=p14@NPR3 | |||
}} |
Revision as of 15:26, 13 September 2013
Short description: | p14@NPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_NPR3_5end |
Coexpression cluster: | C1959_Smooth_Fibroblast_Chondrocyte_Mesenchymal_normal_Olfactory_medulloblastoma |
Association with transcript: | -34bp_to_NM_000908, NM_001204375_5end |
EntrezGene: | NPR3 |
HGNC: | 7945 |
UniProt: | P17342Q60I31A8K4A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 2.06e-11 | 3 |
fat cell | 2.52e-11 | 15 |
receptor cell | 6.98e-11 | 6 |
sensory epithelial cell | 6.98e-11 | 6 |
olfactory epithelial cell | 6.98e-11 | 6 |
GAG secreting cell | 3.15e-10 | 9 |
carbohydrate secreting cell | 3.15e-10 | 9 |
hepatic stem cell | 4.53e-09 | 2 |
hepatic mesenchymal stem cell | 4.53e-09 | 2 |
outer root sheath cell | 7.28e-09 | 2 |
adipocyte of breast | 7.28e-09 | 2 |
annulus pulposus cell | 1.71e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
articulation | 1.80e-16 | 8 |
skeletal joint | 1.80e-16 | 8 |
articular system | 1.80e-16 | 8 |
intervertebral cartilage | 1.39e-12 | 5 |
symphysis | 1.39e-12 | 5 |
nonsynovial joint | 1.39e-12 | 5 |
fibrous joint | 1.39e-12 | 5 |
cartilaginous joint | 1.39e-12 | 5 |
developing mesenchymal condensation | 1.39e-12 | 5 |
pre-cartilage condensation | 1.39e-12 | 5 |
cartilaginous condensation | 1.39e-12 | 5 |
cartilage element | 1.39e-12 | 5 |
post-cranial axial skeletal system | 1.39e-12 | 5 |
vertebral column | 1.39e-12 | 5 |
intervertebral disk | 1.39e-12 | 5 |
intervertebral joint | 1.39e-12 | 5 |
subdivision of skeletal system | 5.69e-11 | 16 |
pineal body | 2.29e-09 | 2 |
regional part of epithalamus | 2.29e-09 | 2 |
secretory circumventricular organ | 2.29e-09 | 2 |
circumventricular organ | 2.29e-09 | 2 |
epithalamus | 2.29e-09 | 2 |
hair root sheath | 7.28e-09 | 2 |
hair outer root sheath | 7.28e-09 | 2 |
bulb of hair follicle | 7.28e-09 | 2 |
annulus fibrosus | 1.71e-08 | 2 |
fibrocartilage | 1.71e-08 | 2 |
annulus fibrosus disci intervertebralis | 1.71e-08 | 2 |
cavity lining | 2.58e-07 | 12 |
serous membrane | 2.58e-07 | 12 |
axial skeletal system | 8.62e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.