FFCP PHASE1:Mm9::chr15:97738692..97738747,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22337|HGNC=|MCL_coexpression_id=12|UniProt=P48281|association_with_transcript=0bp_to_ENSMUST00000023119,NM_009504,uc007xlk.1_5end|description=CAGE_peak_1_at_Vdr_5end|id=chr15:97738692..97738747,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002563,8.63e-07,9;CL:0002251,8.63e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.38e-10!43;UBERON:0000344!4.65e-10!15;UBERON:0001242!4.69e-09!13;UBERON:0000060!4.69e-09!13;UBERON:0001262!4.69e-09!13;UBERON:0004786!4.69e-09!13;UBERON:0005409!2.67e-07!59|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.67e-12,31;UBERON:0000344,3.15e-10,15;UBERON:0001242,3.33e-09,13;UBERON:0001262,3.33e-09,13;UBERON:0004786,3.33e-09,13;UBERON:0005409,9.49e-08,47;UBERON:0003350,8.63e-07,9;UBERON:0004808,8.63e-07,9;UBERON:0001277,8.63e-07,9|phase1_expression=1.44133962394315,184.956966048861,154.244742153053,888.942317030773,806.442125213619,61.9474513354873,67.7476657727024,0.774739940649458,5.20918271961167,5.38348410540585,0.34243593645101,0.319088635981346,0.513602189793617,0.524522414513984,0.333109761815663,0,1.39912375625629,0.157731082679119,0.137114433605739,0.42438965179803,28.7446320710616,2.08510997521859,0.783599367416806,114.394582297286,78.4579741249721,108.529841217739,108.552023032087,91.7907451241887,313.158595264104,214.729670555461,53.6587835785837,1.27006134691926,0,0,221.549192349228,167.896991812077,227.444662876279,0,0.7813353445238,0.523523743973798,0,0,0,4.28049181116963,4.05507724878058,10.4621648732158,29.7308710852255,2.61630187656536,14.9386604259441,12.6379434398284,9.65906309215001,11.5002051491977,0.167782606057736,1.45072428402269,0.672187598284928,3.8588915405392,3.15186783932632,6.18806510732931,0.202316460859598,0.528990979272033,0,18.6364492638023,30.2360230677787,5.39939830368839,4.94433181283487,4.9733608046227,3.29560121570245,4.99483796918021,0,0,0,0.571301968807607,0.441737081903227,0,0,0,0,0.127687338085188,0.153606533256243,0,0,0,1.11673199600552,0,0.61119299110724,0.589257170947335,0.284743361598206,0,0.605809546665472,6.04572480854284,0.289864488701678,0,0.679971333707751,0,0,0,43.2568814005796,63.4000799990375,44.4234067870906,49.4675404314476,0.563373679106722,100.094652383168,68.7974147207943,99.5493384414664,1.94841936910093,1.01343946190039,1.51657333504435,83.2400483151947,11.6522047641227,9.79718117827843,1.56136794089522,0.304465478312141,1.15307748628029,0.452167921657868,1.88141931417128,4.27266410520897,161.665508898281,1.44599356919912,15.0383793831479,39.3093445372204,32.2428616952175,53.3362778448744,424.973215577319,0.585561594023094,0,338.991512261801,7.6681679683789,1.79970819298022,9.40319680340679,0,0,0,0.347648640384553,0.255715457330331,0,0,2.13862664085664,31.1017426525233,2.77995034277042,28.8305342564469,0.780722657776222,0.919608417733892,0.360124259610698,2.10986744970001,1.08858398642125,2.562274405697,2.15513966487376,9.57202471734358,0.215567992932842,1.32374256117473,1.58356011747554,3.28793598641362,1.39023624612799,5.92028683087683,12.3469281844766,5.7719937377363,3.51106593656617,3.60287069960601,5.39910648851626,1.03562886267751,1.87620847984877,0.900310307305074,1.65721314909647,1.37734962223183,1.69693824176116,2.55787339225449,1.07309360559848,2.80236821681207,2.13927804887525,1.80584210487005,2.26992666728396,3.21639972335731,1.53685080703735,4.69722465661301,0.210289948564127,0,1230.47954783166,359.123869529093,0.853153002140936,0.928946687441754,2.57734922644187,4.23535401709019,6.44896327150124,12.935342575654,216.859781125842,21.4108641141214,30.6628954736329,29.8434708061726,29.8295053292254,218.413116302976,236.67116461279,393.702297223884,1.13800740571849,3.88444942873078,11.270773567308,12.2190796707189,18.8133912552597,26.862019017992,59.6952910452989,139.786810136683,152.916760917499,156.344206688921,0,0.500535317148282,0.589676985339609,0.224862112384854,0.202860121388503,0.482354319504834,0.25462585178142,0.863088412352432,0.324270453550071,0,1.43768206527355,0,0.624075346229121,0.505157755894224,0.179397413521912,0,8.49864674766381,0.947457058852424,1.30371981153621,0.339490171550376,1.40814148973101,1.67506257441816,5.71304738126433,6.43941037930736,3.94087860265477,4.87222317227305,3.98636921643718,5.89907932976657,7.25276923836761,6.79850575333104,0,0.54390568381871,262.110357519146,242.824336748165,1.9266070798535,1.17211686592203,42.7870207433123,4.79694761688309,9.14973836307144,8.19921363022941,16.8030250231583,19.8344102300618,28.7410289566288,31.9876479791381,12.9539424535966,10.5212108848072,17.7879500075936,4.81981974632711,5.81954349353901,6.94455854302295,5.37526965866801,10.0631775013247,5.30980553359851,6.5550771761845,5.74414758233027,4.14931175462976,5.90603785761546,5.53383266299069,9.04499026088774,5.45300594216258,6.77345018930971,2.52829406348653,1.05418608574999,2.06271086496374,9.87274856685985,0.36012218806262,0.129358683782755,1.28602221018955,7.27094957933322,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| ||
|EntrezGene=22337 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=P48281 | |||
|association_with_transcript=0bp_to_ENSMUST00000023119,NM_009504,uc007xlk.1_5end | |||
|description=CAGE_peak_1_at_Vdr_5end | |||
|id=chr15:97738692..97738747,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,8.63e-07,9;CL:0002251,8.63e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.38e-10!43;UBERON:0000344!4.65e-10!15;UBERON:0001242!4.69e-09!13;UBERON:0000060!4.69e-09!13;UBERON:0001262!4.69e-09!13;UBERON:0004786!4.69e-09!13;UBERON:0005409!2.67e-07!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.67e-12,31;UBERON:0000344,3.15e-10,15;UBERON:0001242,3.33e-09,13;UBERON:0001262,3.33e-09,13;UBERON:0004786,3.33e-09,13;UBERON:0005409,9.49e-08,47;UBERON:0003350,8.63e-07,9;UBERON:0004808,8.63e-07,9;UBERON:0001277,8.63e-07,9 | |||
|phase1_expression=1.44133962394315,184.956966048861,154.244742153053,888.942317030773,806.442125213619,61.9474513354873,67.7476657727024,0.774739940649458,5.20918271961167,5.38348410540585,0.34243593645101,0.319088635981346,0.513602189793617,0.524522414513984,0.333109761815663,0,1.39912375625629,0.157731082679119,0.137114433605739,0.42438965179803,28.7446320710616,2.08510997521859,0.783599367416806,114.394582297286,78.4579741249721,108.529841217739,108.552023032087,91.7907451241887,313.158595264104,214.729670555461,53.6587835785837,1.27006134691926,0,0,221.549192349228,167.896991812077,227.444662876279,0,0.7813353445238,0.523523743973798,0,0,0,4.28049181116963,4.05507724878058,10.4621648732158,29.7308710852255,2.61630187656536,14.9386604259441,12.6379434398284,9.65906309215001,11.5002051491977,0.167782606057736,1.45072428402269,0.672187598284928,3.8588915405392,3.15186783932632,6.18806510732931,0.202316460859598,0.528990979272033,0,18.6364492638023,30.2360230677787,5.39939830368839,4.94433181283487,4.9733608046227,3.29560121570245,4.99483796918021,0,0,0,0.571301968807607,0.441737081903227,0,0,0,0,0.127687338085188,0.153606533256243,0,0,0,1.11673199600552,0,0.61119299110724,0.589257170947335,0.284743361598206,0,0.605809546665472,6.04572480854284,0.289864488701678,0,0.679971333707751,0,0,0,43.2568814005796,63.4000799990375,44.4234067870906,49.4675404314476,0.563373679106722,100.094652383168,68.7974147207943,99.5493384414664,1.94841936910093,1.01343946190039,1.51657333504435,83.2400483151947,11.6522047641227,9.79718117827843,1.56136794089522,0.304465478312141,1.15307748628029,0.452167921657868,1.88141931417128,4.27266410520897,161.665508898281,1.44599356919912,15.0383793831479,39.3093445372204,32.2428616952175,53.3362778448744,424.973215577319,0.585561594023094,0,338.991512261801,7.6681679683789,1.79970819298022,9.40319680340679,0,0,0,0.347648640384553,0.255715457330331,0,0,2.13862664085664,31.1017426525233,2.77995034277042,28.8305342564469,0.780722657776222,0.919608417733892,0.360124259610698,2.10986744970001,1.08858398642125,2.562274405697,2.15513966487376,9.57202471734358,0.215567992932842,1.32374256117473,1.58356011747554,3.28793598641362,1.39023624612799,5.92028683087683,12.3469281844766,5.7719937377363,3.51106593656617,3.60287069960601,5.39910648851626,1.03562886267751,1.87620847984877,0.900310307305074,1.65721314909647,1.37734962223183,1.69693824176116,2.55787339225449,1.07309360559848,2.80236821681207,2.13927804887525,1.80584210487005,2.26992666728396,3.21639972335731,1.53685080703735,4.69722465661301,0.210289948564127,0,1230.47954783166,359.123869529093,0.853153002140936,0.928946687441754,2.57734922644187,4.23535401709019,6.44896327150124,12.935342575654,216.859781125842,21.4108641141214,30.6628954736329,29.8434708061726,29.8295053292254,218.413116302976,236.67116461279,393.702297223884,1.13800740571849,3.88444942873078,11.270773567308,12.2190796707189,18.8133912552597,26.862019017992,59.6952910452989,139.786810136683,152.916760917499,156.344206688921,0,0.500535317148282,0.589676985339609,0.224862112384854,0.202860121388503,0.482354319504834,0.25462585178142,0.863088412352432,0.324270453550071,0,1.43768206527355,0,0.624075346229121,0.505157755894224,0.179397413521912,0,8.49864674766381,0.947457058852424,1.30371981153621,0.339490171550376,1.40814148973101,1.67506257441816,5.71304738126433,6.43941037930736,3.94087860265477,4.87222317227305,3.98636921643718,5.89907932976657,7.25276923836761,6.79850575333104,0,0.54390568381871,262.110357519146,242.824336748165,1.9266070798535,1.17211686592203,42.7870207433123,4.79694761688309,9.14973836307144,8.19921363022941,16.8030250231583,19.8344102300618,28.7410289566288,31.9876479791381,12.9539424535966,10.5212108848072,17.7879500075936,4.81981974632711,5.81954349353901,6.94455854302295,5.37526965866801,10.0631775013247,5.30980553359851,6.5550771761845,5.74414758233027,4.14931175462976,5.90603785761546,5.53383266299069,9.04499026088774,5.45300594216258,6.77345018930971,2.52829406348653,1.05418608574999,2.06271086496374,9.87274856685985,0.36012218806262,0.129358683782755,1.28602221018955,7.27094957933322,5.88617098086833,8.72109809191241,12.4830629136986,0.938686832254841,4.44847348814022,4.85162475720916,266.950843512256,46.6632193151167,90.1075098426649,109.941928826889,155.933854757808,140.493763255588,2.78137953015765,1.19609616558497,3.09580301944834,2.77791791054568,0,1.0935538217682,0.686334519619568,9.34881364966204,8.6769900440668,9.95039811391851,6.68269432610579,1.10717597753397,4.26970880966382,2.70013352054503,4.18176592028937,3.71216358368502,2.56242258131159,3.88471241909079,3.66458318777641,322.611668523272,11.8054469486516,10.1464728963154,8.97099276263873,6.6183396182839,2.33341426012857,2.58319646955462,1.68956125490778,3.87278887530988,11.5881902511116,25.1662426621706,21.9841549951666,13.2493802878618,6.00421129193539,3.64905387522296,5.54639168690067,4.28738715826724,3.93858730468459,4.56967115996909,4.68762253127878,3.69223817936443,3.33189284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| |||
|short_description=p1@Vdr | |||
}} | |||
Revision as of 11:46, 13 September 2013
| Short description: | p1@Vdr |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Vdr_5end |
| Coexpression cluster: | MCL_coexpression_mm9:12 |
| Association with transcript: | 0bp_to_ENSMUST00000023119, NM_009504, uc007xlk.1_5end |
| EntrezGene: | Vdr |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 8.63e-07 | 9 |
| epithelial cell of alimentary canal | 8.63e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 1.67e-12 | 31 |
| mucosa | 3.15e-10 | 15 |
| intestinal mucosa | 3.33e-09 | 13 |
| wall of intestine | 3.33e-09 | 13 |
| gastrointestinal system mucosa | 3.33e-09 | 13 |
| gastrointestinal system | 9.49e-08 | 47 |
| epithelium of mucosa | 8.63e-07 | 9 |
| gastrointestinal system epithelium | 8.63e-07 | 9 |
| intestinal epithelium | 8.63e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
