FFCP PHASE1:Hg19::chr4:42154300..42154348,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=389206|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=23815|TSSclassifier=S|UniProt=|association_with_transcript=44bp_to_uc011byy.1_5end|description=CAGE_peak_1_at_BEND4_5end|id=chr4:42154300..42154348,-|ontology_enrichment_celltype=CL:0000236!4.45e-13!14;CL:0000945!3.36e-11!24;CL:0000826!3.36e-11!24;CL:0002319!4.54e-08!25;CL:0000047!2.85e-07!8|ontology_enrichment_celltype_v019=CL:0000236;1.77e-18;13!CL:0000945;6.17e-16;24!CL:0002322;1.76e-10;5!CL:0002319;3.83e-08;25!CL:0000540;9.71e-08;6!CL:0000404;9.71e-08;6!CL:0002321;1.55e-07;15|ontology_enrichment_celltype_v019_2=CL:0000236,3.49e-20,14;CL:0000945,4.62e-16,24;CL:0000826,4.62e-16,24;CL:0002322,1.74e-10,5;CL:0002319,3.41e-08,25;CL:0000540,7.45e-08,6;CL:0000031,7.45e-08,6;CL:0000404,7.45e-08,6;CL:0000047,9.06e-08,8;CL:0000542,8.40e-07,53;CL:0000051,8.40e-07,53|ontology_enrichment_development_v019=UBERON:0009117;4.58e-09;10!UBERON:0005564;4.58e-09;10!CL:0000031;9.71e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.85e-25!82;UBERON:0000073!1.21e-24!94;UBERON:0001016!1.21e-24!94;UBERON:0005743!1.52e-24!86;UBERON:0000955!1.35e-19!69;UBERON:0006238!1.35e-19!69;UBERON:0003080!1.06e-18!42;UBERON:0001049!1.64e-18!57;UBERON:0005068!1.64e-18!57;UBERON:0006241!1.64e-18!57;UBERON:0007135!1.64e-18!57;UBERON:0002780!3.48e-18!41;UBERON:0001890!3.48e-18!41;UBERON:0006240!3.48e-18!41;UBERON:0002020!7.29e-17!34;UBERON:0003528!7.29e-17!34;UBERON:0001893!1.00e-16!34;UBERON:0007023!1.84e-16!115;UBERON:0002616!2.15e-16!59;UBERON:0001869!2.81e-16!32;UBERON:0002791!4.19e-16!33;UBERON:0000956!1.49e-15!25;UBERON:0000203!1.49e-15!25;UBERON:0003056!7.15e-14!61;UBERON:0002619!1.82e-13!22;UBERON:0003075!4.40e-13!86;UBERON:0007284!4.40e-13!86;UBERON:0001950!5.38e-12!20;UBERON:0002346!8.36e-12!90;UBERON:0000153!2.66e-09!129;UBERON:0007811!2.66e-09!129;UBERON:0004121!3.14e-09!169;UBERON:0000924!1.43e-08!173;UBERON:0006601!1.43e-08!173;UBERON:0000033!2.23e-08!123|ontology_enrichment_uberon_v019=UBERON:0000956;4.26e-14;25!UBERON:0000203;4.26e-14;25!UBERON:0001869;5.55e-12;32!UBERON:0003528;4.04e-11;34!UBERON:0002020;4.04e-11;34!UBERON:0002791;7.57e-11;32!UBERON:0002619;7.58e-11;22!UBERON:0001893;1.18e-10;34!UBERON:0002780;2.21e-10;41!UBERON:0001890;2.21e-10;41!UBERON:0001950;1.02e-08;20!UBERON:0000473;1.59e-08;8!UBERON:0000922;9.06e-08;49|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.51e-15,89;UBERON:0000956,4.51e-14,25;UBERON:0000203,4.51e-14,25;UBERON:0001017,1.11e-13,81;UBERON:0001869,7.34e-13,32;UBERON:0002780,9.04e-13,41;UBERON:0001890,9.04e-13,41;UBERON:0003080,9.04e-13,41;UBERON:0006240,9.04e-13,41;UBERON:0001893,7.63e-12,34;UBERON:0003528,8.19e-12,34;UBERON:0002020,8.19e-12,34;UBERON:0002791,1.88e-11,32;UBERON:0002619,6.86e-11,22;UBERON:0000955,1.17e-10,68;UBERON:0006238,1.17e-10,68;UBERON:0000073,1.26e-09,53;UBERON:0002616,1.26e-09,53;UBERON:0001049,7.99e-09,56;UBERON:0005068,7.99e-09,56;UBERON:0006241,7.99e-09,56;UBERON:0007135,7.99e-09,56;UBERON:0003056,8.60e-09,61;UBERON:0001950,9.01e-09,20;UBERON:0000473,1.70e-08,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,2.0036519099174,1.36874425072884,2.00868223351684,0,0,0,0,0,0.154816123316076,0,0,0,0.619737604642413,8.81449241422014,2.93600439334847,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,3.82297027883492,3.55803701545422,2.98711155796555,4.00395987036012,1.72425731986345,3.96626923670917,2.86216126360609,9.10740750575117,5.28513470433845,7.26319133437935,3.96513985737078,0,2.10707267820062,0,0,0,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,3.1434978119451,0,0,0,0,0,0.238490624305342,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,9.87987019649723,11.6626196122907,7.43641234364918,4.35376431064556,6.56034212276634,7.66452454059243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,1.54657762555539,2.84777651068393,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902399225814824,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,1.54227252690289,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.309123034943167,0.732555718546747,0.495056999523528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=389206 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=23815 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=44bp_to_uc011byy.1_5end | |||
|description=CAGE_peak_1_at_BEND4_5end | |||
|id=chr4:42154300..42154348,- | |||
|ontology_enrichment_celltype=CL:0000236!4.45e-13!14;CL:0000945!3.36e-11!24;CL:0000826!3.36e-11!24;CL:0002319!4.54e-08!25;CL:0000047!2.85e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000236;1.77e-18;13!CL:0000945;6.17e-16;24!CL:0002322;1.76e-10;5!CL:0002319;3.83e-08;25!CL:0000540;9.71e-08;6!CL:0000404;9.71e-08;6!CL:0002321;1.55e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.49e-20,14;CL:0000945,4.62e-16,24;CL:0000826,4.62e-16,24;CL:0002322,1.74e-10,5;CL:0002319,3.41e-08,25;CL:0000540,7.45e-08,6;CL:0000031,7.45e-08,6;CL:0000404,7.45e-08,6;CL:0000047,9.06e-08,8;CL:0000542,8.40e-07,53;CL:0000051,8.40e-07,53 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.58e-09;10!UBERON:0005564;4.58e-09;10!CL:0000031;9.71e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.85e-25!82;UBERON:0000073!1.21e-24!94;UBERON:0001016!1.21e-24!94;UBERON:0005743!1.52e-24!86;UBERON:0000955!1.35e-19!69;UBERON:0006238!1.35e-19!69;UBERON:0003080!1.06e-18!42;UBERON:0001049!1.64e-18!57;UBERON:0005068!1.64e-18!57;UBERON:0006241!1.64e-18!57;UBERON:0007135!1.64e-18!57;UBERON:0002780!3.48e-18!41;UBERON:0001890!3.48e-18!41;UBERON:0006240!3.48e-18!41;UBERON:0002020!7.29e-17!34;UBERON:0003528!7.29e-17!34;UBERON:0001893!1.00e-16!34;UBERON:0007023!1.84e-16!115;UBERON:0002616!2.15e-16!59;UBERON:0001869!2.81e-16!32;UBERON:0002791!4.19e-16!33;UBERON:0000956!1.49e-15!25;UBERON:0000203!1.49e-15!25;UBERON:0003056!7.15e-14!61;UBERON:0002619!1.82e-13!22;UBERON:0003075!4.40e-13!86;UBERON:0007284!4.40e-13!86;UBERON:0001950!5.38e-12!20;UBERON:0002346!8.36e-12!90;UBERON:0000153!2.66e-09!129;UBERON:0007811!2.66e-09!129;UBERON:0004121!3.14e-09!169;UBERON:0000924!1.43e-08!173;UBERON:0006601!1.43e-08!173;UBERON:0000033!2.23e-08!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;4.26e-14;25!UBERON:0000203;4.26e-14;25!UBERON:0001869;5.55e-12;32!UBERON:0003528;4.04e-11;34!UBERON:0002020;4.04e-11;34!UBERON:0002791;7.57e-11;32!UBERON:0002619;7.58e-11;22!UBERON:0001893;1.18e-10;34!UBERON:0002780;2.21e-10;41!UBERON:0001890;2.21e-10;41!UBERON:0001950;1.02e-08;20!UBERON:0000473;1.59e-08;8!UBERON:0000922;9.06e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.51e-15,89;UBERON:0000956,4.51e-14,25;UBERON:0000203,4.51e-14,25;UBERON:0001017,1.11e-13,81;UBERON:0001869,7.34e-13,32;UBERON:0002780,9.04e-13,41;UBERON:0001890,9.04e-13,41;UBERON:0003080,9.04e-13,41;UBERON:0006240,9.04e-13,41;UBERON:0001893,7.63e-12,34;UBERON:0003528,8.19e-12,34;UBERON:0002020,8.19e-12,34;UBERON:0002791,1.88e-11,32;UBERON:0002619,6.86e-11,22;UBERON:0000955,1.17e-10,68;UBERON:0006238,1.17e-10,68;UBERON:0000073,1.26e-09,53;UBERON:0002616,1.26e-09,53;UBERON:0001049,7.99e-09,56;UBERON:0005068,7.99e-09,56;UBERON:0006241,7.99e-09,56;UBERON:0007135,7.99e-09,56;UBERON:0003056,8.60e-09,61;UBERON:0001950,9.01e-09,20;UBERON:0000473,1.70e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,2.0036519099174,1.36874425072884,2.00868223351684,0,0,0,0,0,0.154816123316076,0,0,0,0.619737604642413,8.81449241422014,2.93600439334847,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,3.82297027883492,3.55803701545422,2.98711155796555,4.00395987036012,1.72425731986345,3.96626923670917,2.86216126360609,9.10740750575117,5.28513470433845,7.26319133437935,3.96513985737078,0,2.10707267820062,0,0,0,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,3.1434978119451,0,0,0,0,0,0.238490624305342,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,9.87987019649723,11.6626196122907,7.43641234364918,4.35376431064556,6.56034212276634,7.66452454059243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,1.54657762555539,2.84777651068393,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902399225814824,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,1.54227252690289,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.309123034943167,0.732555718546747,0.495056999523528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2591072030832,0.274537029736055,0.235624804691373,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,1.01489521846434,0.764637207142375,0,0.714695326373367,0.411362273086194,0,0.540031437238115,0,0.106824071127473,0,0,8.73274923090878,9.95457569537469,0,5.26106700005114,0,0.957526850661834,0.423347165447766,9.73865820823666,3.93116049358842,0,0,2.50634477090067,0,0,0.201799707191048,0,0,2.15068535015921,2.90778940260141,2.0021897005429,0,0,4.92349595790849,2.16364542780786,0,1.4098700508785,0,0,0.121360521749513,0,0,0,0,0,3.97659059106519,2.95405774462077,0.779160935160341,0,0.422250816255987,0.19924798825107,3.03912307084262,0,0,0.123084805461069,0,0,0,0,0.789147245095469,0,0,0.969332746095218,1.02044907978036,3.99227596002388,0,0,0.724999575434793,0,0.762760950878299,0,0.344743373241465,0,3.47249989866585,0,1.08536794762867,0,0.110579259931225,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,15.0701046139224,0.332423363800313,0,0,0,0,0.317873157960757,0,0,0,0.865554558968364,0,0.442287822516696,0.611030144933625,0,0,0,0.134802265961354,0,0.702793337176017,0.182454789215666,0.19566461893209,0,0,0,6.42752799424029,0.126373159256976,2.55549813004637,3.00695755052017,1.32930774541437,0.661983911750998,0.313932918407225,1.19472429772959,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.677942222341597,0.548167698587004,0,1.13959432720582,0.782205530939212,0,0.213452994739353,0,0,2.86341490414789,0,0,0.99402028452346,0,0.407712618220842,0.418411385249333,0,0,0,0.547621515567972,3.83239764200917,0,0.262887354279314,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,1.43944664511834,2.38568906942791,2.31545790389679,9.48443575943613,7.97728732263956,5.40072439437941,0,0,1.51873891645062,0,0,0.524545881349981,1.05600336519407,0,0,0,0,0,0,0,0,2.39460383124975,7.38832686744051,0,0,0.146552233678082,0,0.387848869084652,1.05786081394152,0,0,0.427149650270779,0.157204305099666,1.24271716604159,0.496166021811951,0,3.41019275466509,0,0,0,0,0,0,0.886068179966986,0.854183854313742,1.3771002377715,0.573409195690071,0.443716206147409,0.496771223531068,6.91743174681154,1.62474530350739,0,0,0.235265819698172,0.936669811613763,3.76794674388145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0.895444205407437,0,0,0,0,0.168942440653073,1.28120759293973,0,0.303859956177382,0.829550616910385,0,0,0,0,0,0,0,4.16097745807149,0,0,0,0,0.622077260032973,11.382599046025,3.5582187760905,0.157265941855896,14.8525107941139,0,0,0,0,0,17.428445645277,0.80057074828547,0,0,0.513833800771676,0,0.957803154342908,0.41023272848151,3.52900374710405,0.622415272177961,0,0,0,1.06172751012966,0,0,0.381382095467167,6.21323933454091,0,0.0752103283492573,0.60511520611056,0,0,0.163771917510097,0,1.2156765231311,1.56215619722769,1.2401207790071,1.33173201407204,4.37579847214576,0,0,0,0,0,0,1.21393120847326,2.73194629621557,0.0887023701626388,3.45701962667338,0,0.747667062745149,0.920818829879887,0.354581522651905,0,1.72684804271131,0.314231179832004,0,3.65263488203798,0,0,0.285906176706625,8.37472142183451,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0.3102063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| |||
|short_description=p1@BEND4 | |||
}} |
Revision as of 10:57, 13 September 2013
Short description: | p1@BEND4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BEND4_5end |
Coexpression cluster: | NA |
Association with transcript: | 44bp_to_uc011byy.1_5end |
EntrezGene: | BEND4 |
HGNC: | 23815 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.49e-20 | 14 |
lymphocyte of B lineage | 4.62e-16 | 24 |
pro-B cell | 4.62e-16 | 24 |
embryonic stem cell | 1.74e-10 | 5 |
neural cell | 3.41e-08 | 25 |
neuron | 7.45e-08 | 6 |
neuroblast | 7.45e-08 | 6 |
electrically signaling cell | 7.45e-08 | 6 |
neuronal stem cell | 9.06e-08 | 8 |
lymphocyte | 8.40e-07 | 53 |
common lymphoid progenitor | 8.40e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.51e-15 | 89 |
cerebral cortex | 4.51e-14 | 25 |
pallium | 4.51e-14 | 25 |
central nervous system | 1.11e-13 | 81 |
cerebral hemisphere | 7.34e-13 | 32 |
regional part of forebrain | 9.04e-13 | 41 |
forebrain | 9.04e-13 | 41 |
anterior neural tube | 9.04e-13 | 41 |
future forebrain | 9.04e-13 | 41 |
telencephalon | 7.63e-12 | 34 |
brain grey matter | 8.19e-12 | 34 |
gray matter | 8.19e-12 | 34 |
regional part of telencephalon | 1.88e-11 | 32 |
regional part of cerebral cortex | 6.86e-11 | 22 |
brain | 1.17e-10 | 68 |
future brain | 1.17e-10 | 68 |
regional part of nervous system | 1.26e-09 | 53 |
regional part of brain | 1.26e-09 | 53 |
neural tube | 7.99e-09 | 56 |
neural rod | 7.99e-09 | 56 |
future spinal cord | 7.99e-09 | 56 |
neural keel | 7.99e-09 | 56 |
pre-chordal neural plate | 8.60e-09 | 61 |
neocortex | 9.01e-09 | 20 |
testis | 1.70e-08 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.