FFCP PHASE1:Hg19::chr4:16900184..16900195,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9079|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6533|TSSclassifier=S|UniProt=G5E9Y7|association_with_transcript=0bp_to_ENST00000515064_5end|coexpression_cluster_id=C1083|description=CAGE_peak_6_at_LDB2_5end|id=chr4:16900184..16900195,-|ontology_enrichment_celltype=CL:0002139!5.66e-13!24;CL:0000115!1.34e-10!35;CL:0000071!5.26e-09!18;CL:0002546!5.26e-09!18;CL:0002078!5.67e-08!44|ontology_enrichment_celltype_v019=CL:0002139;2.43e-14;24!CL:0000115;3.70e-11;36!CL:0000071;5.23e-09;18!CL:0002138;1.98e-07;6!CL:0002078;6.20e-07;45|ontology_enrichment_celltype_v019_2=CL:0002139,7.28e-15,24;CL:0000115,1.07e-13,36;CL:0002078,3.06e-10,45;CL:0000071,2.45e-09,18;CL:0002546,2.45e-09,18;CL:0005020,1.24e-07,6;CL:0002138,1.24e-07,6;CL:0005022,1.24e-07,6;CL:0000213,1.31e-07,58;CL:0000215,1.31e-07,58|ontology_enrichment_development_v019=CL:0002546;5.23e-09;18!CL:0005022;1.98e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.74e-32!115;UBERON:0003080!1.05e-22!42;UBERON:0002780!3.42e-22!41;UBERON:0001890!3.42e-22!41;UBERON:0006240!3.42e-22!41;UBERON:0001893!7.78e-21!34;UBERON:0001869!1.09e-20!32;UBERON:0002020!4.35e-20!34;UBERON:0003528!4.35e-20!34;UBERON:0002791!4.82e-20!33;UBERON:0001049!7.14e-19!57;UBERON:0005068!7.14e-19!57;UBERON:0006241!7.14e-19!57;UBERON:0007135!7.14e-19!57;UBERON:0000956!9.08e-18!25;UBERON:0000203!9.08e-18!25;UBERON:0002619!2.53e-17!22;UBERON:0001017!2.80e-17!82;UBERON:0002616!4.81e-17!59;UBERON:0000955!1.39e-16!69;UBERON:0006238!1.39e-16!69;UBERON:0005743!2.55e-16!86;UBERON:0001950!3.39e-16!20;UBERON:0004111!3.09e-15!241;UBERON:0000073!3.97e-15!94;UBERON:0001016!3.97e-15!94;UBERON:0000477!1.02e-14!286;UBERON:0002346!4.66e-14!90;UBERON:0000025!5.39e-13!194;UBERON:0003056!1.23e-12!61;UBERON:0003075!4.52e-12!86;UBERON:0007284!4.52e-12!86;UBERON:0000153!6.63e-11!129;UBERON:0007811!6.63e-11!129;UBERON:0000033!5.91e-10!123;UBERON:0001986!5.26e-09!18;UBERON:0004638!5.26e-09!18;UBERON:0004852!5.26e-09!18;UBERON:0000468!6.24e-09!659;UBERON:0000119!1.72e-08!312;UBERON:0000483!2.90e-08!309;UBERON:0000924!6.28e-08!173;UBERON:0006601!6.28e-08!173;UBERON:0000487!2.59e-07!22;UBERON:0000467!2.86e-07!625;UBERON:0000480!3.77e-07!626;UBERON:0006914!4.11e-07!25;UBERON:0000475!6.53e-07!365|ontology_enrichment_uberon_v019=UBERON:0001869;1.23e-25;32!UBERON:0002619;2.89e-24;22!UBERON:0000956;7.14e-24;25!UBERON:0000203;7.14e-24;25!UBERON:0002791;9.36e-24;32!UBERON:0001893;8.85e-23;34!UBERON:0001950;1.05e-22;20!UBERON:0003528;1.25e-21;34!UBERON:0002020;1.25e-21;34!UBERON:0002780;1.53e-19;41!UBERON:0001890;1.53e-19;41!UBERON:0000073;2.78e-10;53!UBERON:0002616;2.78e-10;53!UBERON:0004638;5.23e-09;18!UBERON:0001986;5.23e-09;18!UBERON:0004852;5.23e-09;18!UBERON:0000955;5.39e-09;68!UBERON:0001017;3.41e-08;75!UBERON:0000487;6.55e-08;22!UBERON:0000200;1.13e-07;6!UBERON:0001871;1.44e-07;6!UBERON:0007023;1.45e-07;114!UBERON:0006914;2.23e-07;25!UBERON:0002021;2.93e-07;5!UBERON:0001872;3.02e-07;5!UBERON:0000922;3.59e-07;49!UBERON:0002050;8.02e-07;5!UBERON:0005423;8.02e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001869,6.25e-29,32;UBERON:0007023,5.27e-28,114;UBERON:0002780,8.33e-28,41;UBERON:0001890,8.33e-28,41;UBERON:0003080,8.33e-28,41;UBERON:0006240,8.33e-28,41;UBERON:0001893,1.39e-26,34;UBERON:0002791,1.45e-26,32;UBERON:0002619,8.73e-25,22;UBERON:0003528,2.20e-24,34;UBERON:0002020,2.20e-24,34;UBERON:0000956,3.34e-24,25;UBERON:0000203,3.34e-24,25;UBERON:0001950,4.03e-23,20;UBERON:0000073,1.08e-18,53;UBERON:0002616,1.08e-18,53;UBERON:0001049,4.76e-17,56;UBERON:0005068,4.76e-17,56;UBERON:0006241,4.76e-17,56;UBERON:0007135,4.76e-17,56;UBERON:0000955,2.91e-16,68;UBERON:0006238,2.91e-16,68;UBERON:0003056,8.29e-16,61;UBERON:0001017,2.61e-15,81;UBERON:0001016,3.19e-14,89;UBERON:0002346,1.46e-13,86;UBERON:0004111,3.93e-12,240;UBERON:0003075,4.49e-11,82;UBERON:0007284,4.49e-11,82;UBERON:0000025,6.77e-11,192;UBERON:0010314,4.52e-10,132;UBERON:0004638,2.45e-09,18;UBERON:0001986,2.45e-09,18;UBERON:0004852,2.45e-09,18;UBERON:0000487,3.64e-08,22;UBERON:0000200,8.11e-08,6;UBERON:0001871,8.62e-08,6;UBERON:0004121,1.00e-07,171;UBERON:0000924,1.00e-07,171;UBERON:0006601,1.00e-07,171;UBERON:0006914,1.20e-07,25;UBERON:0010371,1.69e-07,104;UBERON:0002021,2.57e-07,5;UBERON:0001872,2.70e-07,5|phase1_expression=0,0,0.281908808191942,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,0.672325146451775,0,0.730310090387373,0,0,0,0.313454721478088,1.43117993565528,1.09499540058307,0.502170558379211,0,0,0,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,1.0843174571537,0.50133791063589,1.01392563272577,0.795285947051099,0,0,0,0,3.73290365168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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9079 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6533 | |||
|TSSclassifier=S | |||
|UniProt=G5E9Y7 | |||
|association_with_transcript=0bp_to_ENST00000515064_5end | |||
|coexpression_cluster_id=C1083 | |||
|description=CAGE_peak_6_at_LDB2_5end | |||
|id=chr4:16900184..16900195,- | |||
|ontology_enrichment_celltype=CL:0002139!5.66e-13!24;CL:0000115!1.34e-10!35;CL:0000071!5.26e-09!18;CL:0002546!5.26e-09!18;CL:0002078!5.67e-08!44 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.43e-14;24!CL:0000115;3.70e-11;36!CL:0000071;5.23e-09;18!CL:0002138;1.98e-07;6!CL:0002078;6.20e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,7.28e-15,24;CL:0000115,1.07e-13,36;CL:0002078,3.06e-10,45;CL:0000071,2.45e-09,18;CL:0002546,2.45e-09,18;CL:0005020,1.24e-07,6;CL:0002138,1.24e-07,6;CL:0005022,1.24e-07,6;CL:0000213,1.31e-07,58;CL:0000215,1.31e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;5.23e-09;18!CL:0005022;1.98e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p6@LDB2 | |||
}} |
Revision as of 03:15, 13 September 2013
Short description: | p6@LDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LDB2_5end |
Coexpression cluster: | C1083_lung_uterus_Endothelial_neuroectodermal_spleen_mesenchymal_occipital |
Association with transcript: | 0bp_to_ENST00000515064_5end |
EntrezGene: | LDB2 |
HGNC: | 6533 |
UniProt: | G5E9Y7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 7.28e-15 | 24 |
endothelial cell | 1.07e-13 | 36 |
meso-epithelial cell | 3.06e-10 | 45 |
blood vessel endothelial cell | 2.45e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.45e-09 | 18 |
lymphangioblast | 1.24e-07 | 6 |
endothelial cell of lymphatic vessel | 1.24e-07 | 6 |
vascular lymphangioblast | 1.24e-07 | 6 |
lining cell | 1.31e-07 | 58 |
barrier cell | 1.31e-07 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.