FFCP PHASE1:Mm9::chr14:68738245..68738248,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=237|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr14:68738245..68738248,-|id=chr14:68738245..68738248,-|ontology_enrichment_celltype=CL:0000117!1.17e-14!23;CL:0000337!1.17e-14!23;CL:0000540!3.12e-11!33;CL:0000047!3.12e-11!33;CL:0000031!3.12e-11!33;CL:0000404!3.12e-11!33;CL:0000393!1.01e-08!39;CL:0000211!1.01e-08!39;CL:0002319!2.60e-08!43;CL:0000221!5.24e-08!44;CL:0000133!5.24e-08!44|ontology_enrichment_celltype_v019_2=CL:0002612,4.72e-23,3;CL:0002610,1.10e-22,3;CL:0000117,5.45e-20,23;CL:0000337,5.45e-20,23;CL:0000540,9.09e-14,33;CL:0000047,9.09e-14,33;CL:0000031,9.09e-14,33;CL:0000404,9.09e-14,33;CL:0000393,1.48e-11,39;CL:0000211,1.48e-11,39;CL:0002319,2.01e-10,43;CL:0000221,3.58e-10,44;CL:0000133,3.58e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.74e-17!75;UBERON:0001016!8.74e-17!75;UBERON:0001017!1.81e-16!73;UBERON:0005743!1.81e-16!73;UBERON:0001049!2.49e-15!52;UBERON:0005068!2.49e-15!52;UBERON:0006241!2.49e-15!52;UBERON:0007135!2.49e-15!52;UBERON:0002346!5.38e-15!71;UBERON:0003075!5.38e-15!71;UBERON:0007284!5.38e-15!71;UBERON:0004121!6.05e-14!102;UBERON:0000924!6.05e-14!102;UBERON:0006601!6.05e-14!102;UBERON:0002616!2.16e-12!49;UBERON:0000955!5.27e-12!50;UBERON:0006238!5.27e-12!50;UBERON:0000033!8.89e-12!63;UBERON:0002020!7.70e-11!34;UBERON:0002240!4.37e-10!6;UBERON:0005174!4.37e-10!6;UBERON:0001137!4.37e-10!6;UBERON:0003076!6.45e-10!12;UBERON:0003057!6.45e-10!12;UBERON:0001948!1.64e-08!5;UBERON:0002315!1.64e-08!5;UBERON:0003056!3.72e-08!49;UBERON:0007811!5.22e-08!86;UBERON:0003080!5.35e-08!40;UBERON:0002780!3.38e-07!39;UBERON:0001890!3.38e-07!39;UBERON:0006240!3.38e-07!39;UBERON:0002298!4.41e-07!6;UBERON:0002420!7.61e-07!8;UBERON:0007245!7.61e-07!8;UBERON:0010009!7.61e-07!8;UBERON:0010011!7.61e-07!8;UBERON:0000454!7.61e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002257,4.72e-23,3;UBERON:0004684,1.10e-22,3;UBERON:0002275,1.10e-22,3;UBERON:0002240,2.14e-20,6;UBERON:0005174,2.14e-20,6;UBERON:0001137,2.14e-20,6;UBERON:0003076,1.38e-15,12;UBERON:0003057,1.38e-15,12;UBERON:0001948,4.19e-14,5;UBERON:0002315,4.19e-14,5;UBERON:0001017,1.35e-13,73;UBERON:0001016,3.30e-13,75;UBERON:0000073,8.58e-13,54;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0001049,1.71e-08,52;UBERON:0005068,1.71e-08,52;UBERON:0006241,1.71e-08,52;UBERON:0007135,1.71e-08,52;UBERON:0002020,1.37e-07,34;UBERON:0002346,9.07e-07,64;UBERON:0003075,9.07e-07,64;UBERON:0007284,9.07e-07,64|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.05798195854407,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0.441737081903227,0.122490799214954,0,0,1.10115880999389,1.91531007127782,1.84327839907492,0.395658863190582,0.457438218012048,0.52091337055676,1.95428099300967,0,0.916789486660861,1.47314292736834,3.41692033917847,1.67759501242771,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0.150722640552623,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.748953197024114,0.457500602818626,0,0,0.255715457330331,0.83115217823824,0.486723789203273,0,0,0,0,0,0,0.180062129805349,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.703270119553219,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0,0,0,2.03967832211561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39736270956253,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38097570952153,0,0.859265911718438,0.685082519770642,0,0,0.900642406448441,0,1.03552062350364,0.93408612825759,0,0,0,0,0,0.222246727801615,0,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0,0.0941093804153306,0,0,0.263069711437843,0.135804113845862,0,0.237270036248348,0,0,0,0,0.249810577937946,0,0,0,0,0.231867835620421|short_description=p@chr14:68738245..68738248,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=237 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr14:68738245..68738248,- | |||
|id=chr14:68738245..68738248,- | |||
|ontology_enrichment_celltype=CL:0000117!1.17e-14!23;CL:0000337!1.17e-14!23;CL:0000540!3.12e-11!33;CL:0000047!3.12e-11!33;CL:0000031!3.12e-11!33;CL:0000404!3.12e-11!33;CL:0000393!1.01e-08!39;CL:0000211!1.01e-08!39;CL:0002319!2.60e-08!43;CL:0000221!5.24e-08!44;CL:0000133!5.24e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,4.72e-23,3;CL:0002610,1.10e-22,3;CL:0000117,5.45e-20,23;CL:0000337,5.45e-20,23;CL:0000540,9.09e-14,33;CL:0000047,9.09e-14,33;CL:0000031,9.09e-14,33;CL:0000404,9.09e-14,33;CL:0000393,1.48e-11,39;CL:0000211,1.48e-11,39;CL:0002319,2.01e-10,43;CL:0000221,3.58e-10,44;CL:0000133,3.58e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.74e-17!75;UBERON:0001016!8.74e-17!75;UBERON:0001017!1.81e-16!73;UBERON:0005743!1.81e-16!73;UBERON:0001049!2.49e-15!52;UBERON:0005068!2.49e-15!52;UBERON:0006241!2.49e-15!52;UBERON:0007135!2.49e-15!52;UBERON:0002346!5.38e-15!71;UBERON:0003075!5.38e-15!71;UBERON:0007284!5.38e-15!71;UBERON:0004121!6.05e-14!102;UBERON:0000924!6.05e-14!102;UBERON:0006601!6.05e-14!102;UBERON:0002616!2.16e-12!49;UBERON:0000955!5.27e-12!50;UBERON:0006238!5.27e-12!50;UBERON:0000033!8.89e-12!63;UBERON:0002020!7.70e-11!34;UBERON:0002240!4.37e-10!6;UBERON:0005174!4.37e-10!6;UBERON:0001137!4.37e-10!6;UBERON:0003076!6.45e-10!12;UBERON:0003057!6.45e-10!12;UBERON:0001948!1.64e-08!5;UBERON:0002315!1.64e-08!5;UBERON:0003056!3.72e-08!49;UBERON:0007811!5.22e-08!86;UBERON:0003080!5.35e-08!40;UBERON:0002780!3.38e-07!39;UBERON:0001890!3.38e-07!39;UBERON:0006240!3.38e-07!39;UBERON:0002298!4.41e-07!6;UBERON:0002420!7.61e-07!8;UBERON:0007245!7.61e-07!8;UBERON:0010009!7.61e-07!8;UBERON:0010011!7.61e-07!8;UBERON:0000454!7.61e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002257,4.72e-23,3;UBERON:0004684,1.10e-22,3;UBERON:0002275,1.10e-22,3;UBERON:0002240,2.14e-20,6;UBERON:0005174,2.14e-20,6;UBERON:0001137,2.14e-20,6;UBERON:0003076,1.38e-15,12;UBERON:0003057,1.38e-15,12;UBERON:0001948,4.19e-14,5;UBERON:0002315,4.19e-14,5;UBERON:0001017,1.35e-13,73;UBERON:0001016,3.30e-13,75;UBERON:0000073,8.58e-13,54;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0001049,1.71e-08,52;UBERON:0005068,1.71e-08,52;UBERON:0006241,1.71e-08,52;UBERON:0007135,1.71e-08,52;UBERON:0002020,1.37e-07,34;UBERON:0002346,9.07e-07,64;UBERON:0003075,9.07e-07,64;UBERON:0007284,9.07e-07,64 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.05798195854407,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0.441737081903227,0.122490799214954,0,0,1.10115880999389,1.91531007127782,1.84327839907492,0.395658863190582,0.457438218012048,0.52091337055676,1.95428099300967,0,0.916789486660861,1.47314292736834,3.41692033917847,1.67759501242771,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0.150722640552623,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.748953197024114,0.457500602818626,0,0,0.255715457330331,0.83115217823824,0.486723789203273,0,0,0,0,0,0,0.180062129805349,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.703270119553219,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0,0,0,2.03967832211561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39736270956253,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38097570952153,0,0.859265911718438,0.685082519770642,0,0,0.900642406448441,0,1.03552062350364,0.93408612825759,0,0,0,0,0,0.222246727801615,0,0,0,0,0.188626341386076,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0,0,0.0941093804153306,0,0,0.263069711437843,0.135804113845862,0,0.237270036248348,0,0,0,0,0.249810577937946,0,0,0,0,0.231867835620421 | |||
|short_description=p@chr14:68738245..68738248,- | |||
}} |
Revision as of 02:53, 13 September 2013
Short description: | p@chr14:68738245..68738248, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr14:68738245..68738248, - |
Coexpression cluster: | MCL_coexpression_mm9:237 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 4.72e-23 | 3 |
raphe nuclei neuron | 1.10e-22 | 3 |
CNS neuron (sensu Vertebrata) | 5.45e-20 | 23 |
neuroblast (sensu Vertebrata) | 5.45e-20 | 23 |
neuron | 9.09e-14 | 33 |
neuronal stem cell | 9.09e-14 | 33 |
neuroblast | 9.09e-14 | 33 |
electrically signaling cell | 9.09e-14 | 33 |
electrically responsive cell | 1.48e-11 | 39 |
electrically active cell | 1.48e-11 | 39 |
neural cell | 2.01e-10 | 43 |
ectodermal cell | 3.58e-10 | 44 |
neurectodermal cell | 3.58e-10 | 44 |
Ontology term | p-value | n |
---|---|---|
ventral horn of spinal cord | 4.72e-23 | 3 |
raphe nuclei | 1.10e-22 | 3 |
reticular formation | 1.10e-22 | 3 |
spinal cord | 2.14e-20 | 6 |
dorsal region element | 2.14e-20 | 6 |
dorsum | 2.14e-20 | 6 |
posterior neural tube | 1.38e-15 | 12 |
chordal neural plate | 1.38e-15 | 12 |
regional part of spinal cord | 4.19e-14 | 5 |
gray matter of spinal cord | 4.19e-14 | 5 |
central nervous system | 1.35e-13 | 73 |
nervous system | 3.30e-13 | 75 |
regional part of nervous system | 8.58e-13 | 54 |
ectoderm-derived structure | 3.22e-10 | 95 |
ectoderm | 3.22e-10 | 95 |
presumptive ectoderm | 3.22e-10 | 95 |
neural tube | 1.71e-08 | 52 |
neural rod | 1.71e-08 | 52 |
future spinal cord | 1.71e-08 | 52 |
neural keel | 1.71e-08 | 52 |
gray matter | 1.37e-07 | 34 |
neurectoderm | 9.07e-07 | 64 |
neural plate | 9.07e-07 | 64 |
presumptive neural plate | 9.07e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.