FFCP PHASE1:Hg19::chr4:139163398..139163413,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23657|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11059|TSSclassifier=S|UniProt=Q9UPY5,A8K2U4|association_with_transcript=89bp_to_ENST00000280612,NM_014331,uc011chb.1_5end|coexpression_cluster_id=C4372|description=CAGE_peak_4_at_SLC7A11_5end|id=chr4:139163398..139163413,-|ontology_enrichment_celltype=CL:0000066!2.31e-25!254;CL:0000063!8.75e-16!578;CL:0000548!1.06e-12!679;CL:0000004!1.06e-12!679;CL:0000255!1.06e-12!679;CL:0000012!1.73e-12!682;CL:0000076!1.21e-09!62;CL:0000223!2.42e-09!59;CL:0002076!4.00e-09!43;CL:0000860!4.60e-09!45;CL:0002057!4.58e-08!42;CL:0000003!4.54e-07!722|ontology_enrichment_celltype_v019=CL:0000860;1.56e-15;33!CL:0002057;1.56e-15;33!CL:0000473;1.17e-09;39!CL:0000234;1.17e-09;39!CL:0002076;3.11e-08;42!CL:0002251;7.73e-08;20|ontology_enrichment_celltype_v019_2=CL:0000066,2.28e-28,253;CL:0000223,2.66e-11,58;CL:0000860,1.06e-10,42;CL:0002057,1.06e-10,42;CL:0002076,1.82e-10,42;CL:0000076,1.12e-09,63;CL:0000473,2.76e-08,48;CL:0000234,2.76e-08,48;CL:0002251,1.45e-07,20;CL:0002009,3.73e-07,61;CL:0002194,3.83e-07,59;CL:0000576,3.83e-07,59;CL:0000040,3.83e-07,59;CL:0000559,3.83e-07,59|ontology_enrichment_development_v019=CL:0002057;1.68e-08;42|ontology_enrichment_disease=DOID:305!7.10e-22!106;DOID:0050687!1.11e-19!143;DOID:162!5.36e-17!235;DOID:14566!1.73e-16!239;DOID:1749!4.00e-07!14;DOID:299!8.08e-07!25|ontology_enrichment_disease_v019=DOID:1749;3.54e-08;14!DOID:299;4.53e-08;25!DOID:305;8.57e-08;106|ontology_enrichment_disease_v019_2=DOID:305,2.45e-26,106;DOID:0050687,6.76e-21,143;DOID:162,1.37e-15,235;DOID:14566,6.45e-15,239;DOID:299,2.77e-08,25;DOID:1749,4.37e-08,14|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0.726713517082227,0.856402095563933,1.40954404095971,0,0,0,2.53299878168311,0.631719873426831,0.261185628199839,0,0,0.436882744260345,0.263766978228454,0.123766352960047,0,0.672325146451775,1.20538905604795,0,0,0,0.204000691244253,0.626909442956176,0,0.684372125364421,0.251085279189606,2.67446920117829,2.05251473624864,2.83358812729245,0.393364276848904,1.91914699048606,0.619264493264304,0.919421224478927,0.6024118375565,5.9160641626686,4.49309763365749,7.2506308568585,0,1.10799081706375,0.601633342410425,0.217010870715852,0,0,0,8.57849608799432,5.29026321164333,4.60909716256851,6.0431549595478,16.0355476328512,8.6717783850629,11.507695692886,10.7587496742222,14.6618982530923,4.82643953031266,8.39130088658974,2.70852973188684,8.65914761895982,19.9221489542227,12.8092386133698,9.48860066349798,8.98601275813062,9.59005688698562,7.91643120448119,11.9678194572979,8.09827026012119,11.8985787837719,22.6954089876456,14.3249117268982,11.8086872670669,13.037072960505,11.7281976140763,11.502590550034,15.0993830754902,16.1395817594851,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,1.12101712596307,0.526768169550154,0.196709770113833,0,0,0.167186495390678,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,1.91793842765295,2.89151321907653,1.50401373190767,1.01392563272577,0,0,1.13441780596881,0.886917589850256,0.966182642624386,0.130979075497713,1.82147644146271,0.741568885568859,5.19275829847493,3.83085422058388,4.12169677608482,5.24679373471752,7.43593384014166,4.45749001595478,4.17401055470081,0,2.42998351125316,2.26123176769604,1.67799774483962,2.47606237746061,1.25396979922086,3.6178346283706,4.98072767761394,2.34304428935269,2.81980521976403,1.52054421143703,0.732186172644509,4.04429388380456,0.81014194788176,4.28638695763583,1.79623498100936,2.92789849256638,1.53316637465883,1.89853131913626,1.64881569537367,0,0,1.3082821564276,0.993943903390637,2.02608818663328,2.78059279707759,10.0392817262085,1.77334191099179,2.24271040056923,0,0.49333509683432,0.622422070799533,3.63718814588158,2.28846664358842,0.756787138224657,1.15235184896,2.34321431833797,0.312160076830321,0,0.298897361103602,2.3486899728753,1.61872944368132,0.280901613404497,0.204154171254893,0.491337269247072,0.516628905878827,0,0,0,0,0.505008341862199,1.12606667884768,0.554128230968366,0.877955241761676,0.30648779579902,0.300476117813194,0.680593098960126,4.30535125653269,2.13557388818567,2.7551147150743,4.80145753735044,4.12210116953756,7.9868567414145,1.8611685633159,3.37552664482532,2.72823614451356,3.5340728394176,2.30124746605748,0.969876340912871,4.61512470271599,2.11579406278045,0.67824236924195,1.15956511897978,4.36393792945335,2.00763216772303,2.19552671033272,1.72288698817931,2.67246068599892,2.38420426535352,3.5324919122588,0.72995471815166,0,0,0,0,0,2.01121560067735,2.36018566109342,1.92808823906786,2.75734931830985,1.96091499683166,2.84724742933316,1.48314438976181,2.74710051175484,2.69323009862473,0,1.40241773803446,0,0,0,0,0.590789906681404,0.882926198829301,1.47586126251736,0.686271241194102,4.93876284338815,4.49607013030478,10.8571290204561,7.77742939331649,0.977424915930974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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23657 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11059 | |||
|TSSclassifier=S | |||
|UniProt=Q9UPY5,A8K2U4 | |||
|association_with_transcript=89bp_to_ENST00000280612,NM_014331,uc011chb.1_5end | |||
|coexpression_cluster_id=C4372 | |||
|description=CAGE_peak_4_at_SLC7A11_5end | |||
|id=chr4:139163398..139163413,- | |||
|ontology_enrichment_celltype=CL:0000066!2.31e-25!254;CL:0000063!8.75e-16!578;CL:0000548!1.06e-12!679;CL:0000004!1.06e-12!679;CL:0000255!1.06e-12!679;CL:0000012!1.73e-12!682;CL:0000076!1.21e-09!62;CL:0000223!2.42e-09!59;CL:0002076!4.00e-09!43;CL:0000860!4.60e-09!45;CL:0002057!4.58e-08!42;CL:0000003!4.54e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.56e-15;33!CL:0002057;1.56e-15;33!CL:0000473;1.17e-09;39!CL:0000234;1.17e-09;39!CL:0002076;3.11e-08;42!CL:0002251;7.73e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.28e-28,253;CL:0000223,2.66e-11,58;CL:0000860,1.06e-10,42;CL:0002057,1.06e-10,42;CL:0002076,1.82e-10,42;CL:0000076,1.12e-09,63;CL:0000473,2.76e-08,48;CL:0000234,2.76e-08,48;CL:0002251,1.45e-07,20;CL:0002009,3.73e-07,61;CL:0002194,3.83e-07,59;CL:0000576,3.83e-07,59;CL:0000040,3.83e-07,59;CL:0000559,3.83e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;1.68e-08;42 | |||
|ontology_enrichment_disease=DOID:305!7.10e-22!106;DOID:0050687!1.11e-19!143;DOID:162!5.36e-17!235;DOID:14566!1.73e-16!239;DOID:1749!4.00e-07!14;DOID:299!8.08e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.54e-08;14!DOID:299;4.53e-08;25!DOID:305;8.57e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.45e-26,106;DOID:0050687,6.76e-21,143;DOID:162,1.37e-15,235;DOID:14566,6.45e-15,239;DOID:299,2.77e-08,25;DOID:1749,4.37e-08,14 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p4@SLC7A11 | |||
}} |
Revision as of 02:27, 13 September 2013
Short description: | p4@SLC7A11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SLC7A11_5end |
Coexpression cluster: | C4372_CD14_maxillary_smallcell_glioblastoma_Mammary_small_gastric |
Association with transcript: | 89bp_to_ENST00000280612, NM_014331, uc011chb.1_5end |
EntrezGene: | SLC7A11 |
HGNC: | 11059 |
UniProt: | Q9UPY5A8K2U4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.28e-28 | 253 |
endodermal cell | 2.66e-11 | 58 |
classical monocyte | 1.06e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-10 | 42 |
endo-epithelial cell | 1.82e-10 | 42 |
squamous epithelial cell | 1.12e-09 | 63 |
defensive cell | 2.76e-08 | 48 |
phagocyte | 2.76e-08 | 48 |
epithelial cell of alimentary canal | 1.45e-07 | 20 |
macrophage dendritic cell progenitor | 3.73e-07 | 61 |
monopoietic cell | 3.83e-07 | 59 |
monocyte | 3.83e-07 | 59 |
monoblast | 3.83e-07 | 59 |
promonocyte | 3.83e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.45e-26 | 106 |
cell type cancer | 6.76e-21 | 143 |
cancer | 1.37e-15 | 235 |
disease of cellular proliferation | 6.45e-15 | 239 |
adenocarcinoma | 2.77e-08 | 25 |
squamous cell carcinoma | 4.37e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.