FFCP PHASE1:Hg19::chr3:53033328..53033357,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:53033328..53033357,-|id=chr3:53033328..53033357,-|ontology_enrichment_celltype=CL:0000066!5.92e-25!254;CL:0002076!1.27e-15!43;CL:0000223!2.78e-12!59;CL:0002149!7.01e-12!6;CL:0002255!7.01e-12!6;CL:0000244!6.84e-08!4;CL:0000731!6.84e-08!4;CL:0002251!3.36e-07!21;CL:0002150!4.32e-07!3;CL:0000861!4.32e-07!3;CL:0002178!6.43e-07!3;CL:0000039!6.60e-07!7;CL:0000586!6.60e-07!7|ontology_enrichment_celltype_v019=CL:0002541;1.03e-09;3!CL:0002149;1.49e-09;6!CL:0002255;1.49e-09;6!CL:0000159;6.87e-08;2!CL:1000415;2.33e-07;2!CL:0002076;3.56e-07;42!CL:0000244;3.57e-07;4!CL:0000731;3.57e-07;4|ontology_enrichment_celltype_v019_2=CL:0000066,2.14e-23,253;CL:0002076,5.12e-10,42;CL:0002149,1.46e-09,6;CL:0002255,1.46e-09,6;CL:0002541,1.55e-09,3;CL:0000223,5.51e-09,58;CL:0000159,6.44e-08,2;CL:1000415,2.45e-07,2;CL:0000244,3.30e-07,4;CL:0000731,3.30e-07,4|ontology_enrichment_development_v019=UBERON:0008947;2.14e-11;29|ontology_enrichment_disease=DOID:305!9.82e-33!106;DOID:0050687!1.33e-26!143;DOID:299!9.37e-18!25;DOID:162!1.40e-17!235;DOID:14566!7.46e-17!239;DOID:3001!7.01e-12!6;DOID:193!6.69e-10!29;DOID:120!2.01e-09!27|ontology_enrichment_disease_v019=DOID:299;5.69e-23;25!DOID:305;1.58e-12;106!DOID:3001;1.49e-09;6!DOID:120;2.33e-08;27!DOID:4929;8.96e-08;2!DOID:0050687;1.14e-07;143!DOID:193;1.15e-07;29!DOID:3910;2.49e-07;2!DOID:4468;4.74e-07;2|ontology_enrichment_disease_v019_2=DOID:305,2.08e-41,106;DOID:0050687,3.46e-35,143;DOID:162,5.99e-24,235;DOID:14566,3.37e-23,239;DOID:299,5.85e-23,25;DOID:3001,1.46e-09,6;DOID:120,2.25e-08,27;DOID:4929,9.27e-08,2;DOID:193,1.12e-07,29;DOID:3910,2.02e-07,2;DOID:4468,4.06e-07,2|ontology_enrichment_uberon=UBERON:0001737!1.74e-18!9;UBERON:0004119!1.65e-13!169;UBERON:0000925!1.65e-13!169;UBERON:0006595!1.65e-13!169;UBERON:0005910!3.96e-11!6;UBERON:0002075!1.14e-10!18;UBERON:0001007!3.68e-10!155;UBERON:0001555!3.68e-10!155;UBERON:0007026!3.68e-10!155;UBERON:0000077!4.51e-10!130;UBERON:0002294!7.59e-10!7;UBERON:0001173!7.59e-10!7;UBERON:0004912!7.59e-10!7;UBERON:0001041!1.17e-09!98;UBERON:0000365!1.76e-09!5;UBERON:0008947!2.12e-09!38;UBERON:0003258!2.12e-09!38;UBERON:0004921!1.68e-08!129;UBERON:0004185!1.68e-08!129;UBERON:0001557!1.34e-07!19;UBERON:0000072!4.58e-07!46|ontology_enrichment_uberon_v019=UBERON:0001737;1.67e-28;9!UBERON:0001557;1.67e-28;9!UBERON:0005910;4.22e-12;6!UBERON:0002294;5.88e-11;7!UBERON:0001173;5.88e-11;7!UBERON:0003124;1.03e-09;3!UBERON:0000920;1.03e-09;3!UBERON:0002075;1.19e-09;18!UBERON:0000365;1.46e-09;5!UBERON:0000072;1.47e-08;37!UBERON:0000486;3.13e-08;12!UBERON:0000058;1.48e-07;10!UBERON:0001264;1.80e-07;10!UBERON:0002394;1.90e-07;4!UBERON:0003928;1.90e-07;4!UBERON:0004903;2.49e-07;2!UBERON:0002173;2.49e-07;2!UBERON:0002186;2.49e-07;2!UBERON:0000065;2.87e-07;44|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.58e-29,9;UBERON:0001557,1.22e-12,19;UBERON:0005910,3.51e-12,6;UBERON:0008947,9.55e-10,38;UBERON:0003258,9.55e-10,38;UBERON:0002075,1.11e-09,18;UBERON:0000365,1.24e-09,5;UBERON:0000920,1.55e-09,3;UBERON:0004119,5.52e-09,160;UBERON:0000925,5.52e-09,160;UBERON:0006595,5.52e-09,160;UBERON:0002294,1.78e-08,9;UBERON:0001173,1.78e-08,9;UBERON:0004912,1.78e-08,9;UBERON:0001264,1.71e-07,10;UBERON:0004903,2.02e-07,2;UBERON:0002173,2.02e-07,2;UBERON:0002186,2.02e-07,2;UBERON:0000072,2.21e-07,47;UBERON:0001007,3.13e-07,145;UBERON:0001555,3.13e-07,145;UBERON:0007026,3.13e-07,145|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,1.36373060295417,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,4.8505788016336,6.74338760312407,9.15841913557232,4.52205288202815,5.66486554640256,6.40630671599961,4.85392709376592,4.70931516300831,4.23221872641029,0,0,0,0,0,0,0,0,0.368965315629341,0,0,1.1240175325762,0.402115889646523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05984602216551,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:53033328..53033357,- | |||
|id=chr3:53033328..53033357,- | |||
|ontology_enrichment_celltype=CL:0000066!5.92e-25!254;CL:0002076!1.27e-15!43;CL:0000223!2.78e-12!59;CL:0002149!7.01e-12!6;CL:0002255!7.01e-12!6;CL:0000244!6.84e-08!4;CL:0000731!6.84e-08!4;CL:0002251!3.36e-07!21;CL:0002150!4.32e-07!3;CL:0000861!4.32e-07!3;CL:0002178!6.43e-07!3;CL:0000039!6.60e-07!7;CL:0000586!6.60e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.03e-09;3!CL:0002149;1.49e-09;6!CL:0002255;1.49e-09;6!CL:0000159;6.87e-08;2!CL:1000415;2.33e-07;2!CL:0002076;3.56e-07;42!CL:0000244;3.57e-07;4!CL:0000731;3.57e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.14e-23,253;CL:0002076,5.12e-10,42;CL:0002149,1.46e-09,6;CL:0002255,1.46e-09,6;CL:0002541,1.55e-09,3;CL:0000223,5.51e-09,58;CL:0000159,6.44e-08,2;CL:1000415,2.45e-07,2;CL:0000244,3.30e-07,4;CL:0000731,3.30e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.14e-11;29 | |||
|ontology_enrichment_disease=DOID:305!9.82e-33!106;DOID:0050687!1.33e-26!143;DOID:299!9.37e-18!25;DOID:162!1.40e-17!235;DOID:14566!7.46e-17!239;DOID:3001!7.01e-12!6;DOID:193!6.69e-10!29;DOID:120!2.01e-09!27 | |||
|ontology_enrichment_disease_v019=DOID:299;5.69e-23;25!DOID:305;1.58e-12;106!DOID:3001;1.49e-09;6!DOID:120;2.33e-08;27!DOID:4929;8.96e-08;2!DOID:0050687;1.14e-07;143!DOID:193;1.15e-07;29!DOID:3910;2.49e-07;2!DOID:4468;4.74e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.08e-41,106;DOID:0050687,3.46e-35,143;DOID:162,5.99e-24,235;DOID:14566,3.37e-23,239;DOID:299,5.85e-23,25;DOID:3001,1.46e-09,6;DOID:120,2.25e-08,27;DOID:4929,9.27e-08,2;DOID:193,1.12e-07,29;DOID:3910,2.02e-07,2;DOID:4468,4.06e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.74e-18!9;UBERON:0004119!1.65e-13!169;UBERON:0000925!1.65e-13!169;UBERON:0006595!1.65e-13!169;UBERON:0005910!3.96e-11!6;UBERON:0002075!1.14e-10!18;UBERON:0001007!3.68e-10!155;UBERON:0001555!3.68e-10!155;UBERON:0007026!3.68e-10!155;UBERON:0000077!4.51e-10!130;UBERON:0002294!7.59e-10!7;UBERON:0001173!7.59e-10!7;UBERON:0004912!7.59e-10!7;UBERON:0001041!1.17e-09!98;UBERON:0000365!1.76e-09!5;UBERON:0008947!2.12e-09!38;UBERON:0003258!2.12e-09!38;UBERON:0004921!1.68e-08!129;UBERON:0004185!1.68e-08!129;UBERON:0001557!1.34e-07!19;UBERON:0000072!4.58e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.67e-28;9!UBERON:0001557;1.67e-28;9!UBERON:0005910;4.22e-12;6!UBERON:0002294;5.88e-11;7!UBERON:0001173;5.88e-11;7!UBERON:0003124;1.03e-09;3!UBERON:0000920;1.03e-09;3!UBERON:0002075;1.19e-09;18!UBERON:0000365;1.46e-09;5!UBERON:0000072;1.47e-08;37!UBERON:0000486;3.13e-08;12!UBERON:0000058;1.48e-07;10!UBERON:0001264;1.80e-07;10!UBERON:0002394;1.90e-07;4!UBERON:0003928;1.90e-07;4!UBERON:0004903;2.49e-07;2!UBERON:0002173;2.49e-07;2!UBERON:0002186;2.49e-07;2!UBERON:0000065;2.87e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.58e-29,9;UBERON:0001557,1.22e-12,19;UBERON:0005910,3.51e-12,6;UBERON:0008947,9.55e-10,38;UBERON:0003258,9.55e-10,38;UBERON:0002075,1.11e-09,18;UBERON:0000365,1.24e-09,5;UBERON:0000920,1.55e-09,3;UBERON:0004119,5.52e-09,160;UBERON:0000925,5.52e-09,160;UBERON:0006595,5.52e-09,160;UBERON:0002294,1.78e-08,9;UBERON:0001173,1.78e-08,9;UBERON:0004912,1.78e-08,9;UBERON:0001264,1.71e-07,10;UBERON:0004903,2.02e-07,2;UBERON:0002173,2.02e-07,2;UBERON:0002186,2.02e-07,2;UBERON:0000072,2.21e-07,47;UBERON:0001007,3.13e-07,145;UBERON:0001555,3.13e-07,145;UBERON:0007026,3.13e-07,145 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,1.36373060295417,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,4.8505788016336,6.74338760312407,9.15841913557232,4.52205288202815,5.66486554640256,6.40630671599961,4.85392709376592,4.70931516300831,4.23221872641029,0,0,0,0,0,0,0,0,0.368965315629341,0,0,1.1240175325762,0.402115889646523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05984602216551,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.0962221127255121,1.34060455107157,0,0.188287601553558,0.43050537267123,1.68471475667626,3.10401107475673,1.37834040124176,0,0,0,0,0,0,0,0,0,0,4.16568367167754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49137296979728,0,0,0,7.38753981696674,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14539229015644,1.9692329214317,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.796554137998498,1.77977555204936,0,0,0,0,0,0,0,0,0,0,4.03072315020264,7.94715342388039,0,0,3.4584585658209,4.8469127981277,8.58314238183864,4.14701507651495,1.00757352742049,2.66517388009317,0,0,0,0,0.392125068635479,0,0,0,2.74297483886435,3.59112177950125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0.664653872707185,1.65495977937749,1.56966459203613,1.19472429772959,6.26141001265544,0.138674673013139,0.173559738335131,3.42973390950322,0,0,0,5.51511088347785,3.58137653722309,4.92692742319255,0,0,0,0,0,0,5.08433595110488,2.72539988855215,0.426905989478705,13.5870534515849,4.17862209746907,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.05797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,5.36103978437314,0,1.58694147858591,0,0,0,0,0,0,0.38582807654183,0,0,5.52688546769918,0,0,0,0,0,0,7.37318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,7.66803201760312,0,0,0,0,0,0.150420656698515,0,0,4.45241380618418,0,4.28782650029431,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0.79832133146375,0,0,0,0,0,0,0,0,1.12108865325516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3717709013787,11.4776362695798,5.7332336338646,5.92833788528299,0.98150233615243,4.14520944939716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24217784782927,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0.643264296743914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,1.62806537221949,2.66818364694289,0,8.53339420012575,0,0,0,0,0,0 | |||
|short_description=p@chr3:53033328..53033357,- | |||
}} |
Revision as of 00:52, 13 September 2013
Short description: | p@chr3:53033328..53033357, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:53033328..53033357, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.14e-23 | 253 |
endo-epithelial cell | 5.12e-10 | 42 |
epithelial cell of uterus | 1.46e-09 | 6 |
stromal cell of endometrium | 1.46e-09 | 6 |
chorionic membrane mesenchymal stem cell | 1.55e-09 | 3 |
endodermal cell | 5.51e-09 | 58 |
seromucus secreting cell | 6.44e-08 | 2 |
epithelial cell of gall bladder | 2.45e-07 | 2 |
transitional epithelial cell | 3.30e-07 | 4 |
urothelial cell | 3.30e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.58e-29 | 9 |
upper respiratory tract | 1.22e-12 | 19 |
transitional epithelium | 3.51e-12 | 6 |
respiratory primordium | 9.55e-10 | 38 |
endoderm of foregut | 9.55e-10 | 38 |
viscus | 1.11e-09 | 18 |
urothelium | 1.24e-09 | 5 |
egg chorion | 1.55e-09 | 3 |
endoderm-derived structure | 5.52e-09 | 160 |
endoderm | 5.52e-09 | 160 |
presumptive endoderm | 5.52e-09 | 160 |
biliary system | 1.78e-08 | 9 |
biliary tree | 1.78e-08 | 9 |
biliary bud | 1.78e-08 | 9 |
pancreas | 1.71e-07 | 10 |
bronchoalveolar duct junction | 2.02e-07 | 2 |
alveolar duct | 2.02e-07 | 2 |
bronchiole | 2.02e-07 | 2 |
segment of respiratory tract | 2.21e-07 | 47 |
digestive system | 3.13e-07 | 145 |
digestive tract | 3.13e-07 | 145 |
primitive gut | 3.13e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.08e-41 | 106 |
cell type cancer | 3.46e-35 | 143 |
cancer | 5.99e-24 | 235 |
disease of cellular proliferation | 3.37e-23 | 239 |
adenocarcinoma | 5.85e-23 | 25 |
female reproductive endometrioid cancer | 1.46e-09 | 6 |
female reproductive organ cancer | 2.25e-08 | 27 |
tubular adenocarcinoma | 9.27e-08 | 2 |
reproductive organ cancer | 1.12e-07 | 29 |
lung adenocarcinoma | 2.02e-07 | 2 |
clear cell adenocarcinoma | 4.06e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.