FFCP PHASE1:Mm9::chr13:24298106..24298123,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68732|HGNC=|MCL_coexpression_id=18|UniProt=E9Q7X4|association_with_transcript=38bp_to_ENSMUST00000123076_5end|description=CAGE_peak_5_at_Lrrc16a_5end|id=chr13:24298106..24298123,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000553,3.83e-21,6;CL:0000556,3.83e-21,6;CL:0000050,4.55e-14,9;CL:0000049,2.82e-12,19;CL:0000839,1.07e-09,13;CL:0000988,3.99e-09,32;CL:0002032,3.99e-09,32;CL:0000037,3.99e-09,32;CL:0000837,3.99e-09,32;CL:0000763,7.63e-08,16;CL:0002027,2.58e-07,3;CL:0002006,2.58e-07,3;CL:0002024,2.58e-07,3;CL:0002031,6.42e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.23e-09!48;UBERON:0002405!5.46e-08!70;UBERON:0002390!1.22e-07!45;UBERON:0003061!1.22e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0002106,2.19e-13,6;UBERON:0004457,2.19e-13,6;UBERON:0000042,2.19e-13,6;UBERON:0004854,2.19e-13,6;UBERON:0009034,2.19e-13,6;UBERON:0002095,2.19e-13,6;UBERON:0004782,2.19e-13,6;UBERON:0003281,2.19e-13,6;UBERON:0009664,2.19e-13,6;UBERON:0002296,2.19e-13,6;UBERON:0005602,2.19e-13,6;UBERON:0001179,2.19e-13,6;UBERON:0006293,2.19e-13,6;UBERON:0003887,4.25e-12,10;UBERON:0002193,5.30e-11,48;UBERON:0002405,5.30e-11,48;UBERON:0002390,1.18e-09,45;UBERON:0003061,1.18e-09,45;UBERON:0002371,7.63e-08,16;UBERON:0001474,8.64e-08,22;UBERON:0004765,8.64e-08,22;UBERON:0001434,8.64e-08,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99865857089398,2.63217847606774,0,11.3566379528966,10.9691546884591,6.79023442876848,0,0,0,0.799962113967033,0.68822784320151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,6.04017381807851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638436690425939,0.307213066512487,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.22836775943812,9.58070169494535,0.593768556259299,0,0,0,0,0.117588707135705,0.125666591329675,0,0.289198713839823,0,0.323533699894818,1.32504911076236,0.484875253135222,0,0.292780797011547,0.209446706813455,0,3.23500836165985,0,2.03312363316904,0,0,0,0,0.255715457330331,0,0.324482526135515,0.101839363850316,1.49288364732112,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0.702213187313235,0,0.284163499395593,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,3.78521907415429,0.102904612379284,0,0,0,0.232236671860439,0,0.201683524623343,0.22237804384487,0,0,0,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202860121388503,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0,0,0.554259570499814,0,0,0,0,0,0.238043640886014,0,0.315270288212382,0.221464689648775,0.478364305972461,0.163863314715738,0.863424909329478,0.289298117163023,0,0,0.491764273019036,0.275936746304732,0.321101179975584,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,9.63963949265421,0,0,0,0.329940245945071,0,0,0,0.188605079755898,0,0.614870295887855,0.516856586336442,0.363533729477506,0,0,0,0,0.340439605753788,0,0.129358683782755,0.214337035031592,0,0,0,0,0,0,0,0.49465875882444,0,0,0,0,0.291480836629851,0.18542530201051,2.56306321196779,0.206386867963223,0.370389054739423,2.44878994106098,3.69074414846768,4.34678529092393,0,0.139951452323658,0.276399947608848,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,1.26404448251271,0.405450430580328,0.102710957164827,0.25984164595559,0.358053391334963,0.198681354781265,0.120195449519969,0,0.403865799792591,0,0.504130925684203,0.682205165178267,0.192423683280659,0.467507608726276,0,0,0,0,0,0.375364950902364,0.549454872801795,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@Lrrc16a}} | ||
|EntrezGene=68732 | |||
|HGNC= | |||
|MCL_coexpression_id=18 | |||
|UniProt=E9Q7X4 | |||
|association_with_transcript=38bp_to_ENSMUST00000123076_5end | |||
|description=CAGE_peak_5_at_Lrrc16a_5end | |||
|id=chr13:24298106..24298123,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000553,3.83e-21,6;CL:0000556,3.83e-21,6;CL:0000050,4.55e-14,9;CL:0000049,2.82e-12,19;CL:0000839,1.07e-09,13;CL:0000988,3.99e-09,32;CL:0002032,3.99e-09,32;CL:0000037,3.99e-09,32;CL:0000837,3.99e-09,32;CL:0000763,7.63e-08,16;CL:0002027,2.58e-07,3;CL:0002006,2.58e-07,3;CL:0002024,2.58e-07,3;CL:0002031,6.42e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.23e-09!48;UBERON:0002405!5.46e-08!70;UBERON:0002390!1.22e-07!45;UBERON:0003061!1.22e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,2.19e-13,6;UBERON:0004457,2.19e-13,6;UBERON:0000042,2.19e-13,6;UBERON:0004854,2.19e-13,6;UBERON:0009034,2.19e-13,6;UBERON:0002095,2.19e-13,6;UBERON:0004782,2.19e-13,6;UBERON:0003281,2.19e-13,6;UBERON:0009664,2.19e-13,6;UBERON:0002296,2.19e-13,6;UBERON:0005602,2.19e-13,6;UBERON:0001179,2.19e-13,6;UBERON:0006293,2.19e-13,6;UBERON:0003887,4.25e-12,10;UBERON:0002193,5.30e-11,48;UBERON:0002405,5.30e-11,48;UBERON:0002390,1.18e-09,45;UBERON:0003061,1.18e-09,45;UBERON:0002371,7.63e-08,16;UBERON:0001474,8.64e-08,22;UBERON:0004765,8.64e-08,22;UBERON:0001434,8.64e-08,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99865857089398,2.63217847606774,0,11.3566379528966,10.9691546884591,6.79023442876848,0,0,0,0.799962113967033,0.68822784320151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523523743973798,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,6.04017381807851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638436690425939,0.307213066512487,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.22836775943812,9.58070169494535,0.593768556259299,0,0,0,0,0.117588707135705,0.125666591329675,0,0.289198713839823,0,0.323533699894818,1.32504911076236,0.484875253135222,0,0.292780797011547,0.209446706813455,0,3.23500836165985,0,2.03312363316904,0,0,0,0,0.255715457330331,0,0.324482526135515,0.101839363850316,1.49288364732112,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0.702213187313235,0,0.284163499395593,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,3.78521907415429,0.102904612379284,0,0,0,0.232236671860439,0,0.201683524623343,0.22237804384487,0,0,0,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0.398282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202860121388503,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0,0,0.554259570499814,0,0,0,0,0,0.238043640886014,0,0.315270288212382,0.221464689648775,0.478364305972461,0.163863314715738,0.863424909329478,0.289298117163023,0,0,0.491764273019036,0.275936746304732,0.321101179975584,0,0,0.504941854408746,0,0,0,0,0,0,0,0,0,9.63963949265421,0,0,0,0.329940245945071,0,0,0,0.188605079755898,0,0.614870295887855,0.516856586336442,0.363533729477506,0,0,0,0,0.340439605753788,0,0.129358683782755,0.214337035031592,0,0,0,0,0,0,0,0.49465875882444,0,0,0,0,0.291480836629851,0.18542530201051,2.56306321196779,0.206386867963223,0.370389054739423,2.44878994106098,3.69074414846768,4.34678529092393,0,0.139951452323658,0.276399947608848,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,1.26404448251271,0.405450430580328,0.102710957164827,0.25984164595559,0.358053391334963,0.198681354781265,0.120195449519969,0,0.403865799792591,0,0.504130925684203,0.682205165178267,0.192423683280659,0.467507608726276,0,0,0,0,0,0.375364950902364,0.549454872801795,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@Lrrc16a | |||
}} |
Revision as of 00:11, 13 September 2013
Short description: | p5@Lrrc16a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lrrc16a_5end |
Coexpression cluster: | MCL_coexpression_mm9:18 |
Association with transcript: | 38bp_to_ENSMUST00000123076_5end |
EntrezGene: | Lrrc16a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
megakaryocyte progenitor cell | 3.83e-21 | 6 |
megakaryocyte | 3.83e-21 | 6 |
megakaryocyte-erythroid progenitor cell | 4.55e-14 | 9 |
common myeloid progenitor | 2.82e-12 | 19 |
myeloid lineage restricted progenitor cell | 1.07e-09 | 13 |
hematopoietic cell | 3.99e-09 | 32 |
hematopoietic oligopotent progenitor cell | 3.99e-09 | 32 |
hematopoietic stem cell | 3.99e-09 | 32 |
hematopoietic multipotent progenitor cell | 3.99e-09 | 32 |
myeloid cell | 7.63e-08 | 16 |
CD9-positive, CD41-positive megakaryocyte cell | 2.58e-07 | 3 |
Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 2.58e-07 | 3 |
Kit-positive megakaryocyte progenitor cell | 2.58e-07 | 3 |
hematopoietic lineage restricted progenitor cell | 6.42e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
spleen | 2.19e-13 | 6 |
cavity lining | 2.19e-13 | 6 |
serous membrane | 2.19e-13 | 6 |
gastrointestinal system mesentery | 2.19e-13 | 6 |
stomach region | 2.19e-13 | 6 |
mesentery | 2.19e-13 | 6 |
gastrointestinal system serosa | 2.19e-13 | 6 |
mesentery of stomach | 2.19e-13 | 6 |
gut mesentery | 2.19e-13 | 6 |
dorsal mesentery | 2.19e-13 | 6 |
dorsal mesogastrium | 2.19e-13 | 6 |
peritoneal cavity | 2.19e-13 | 6 |
spleen primordium | 2.19e-13 | 6 |
intraembryonic coelom | 4.25e-12 | 10 |
hemolymphoid system | 5.30e-11 | 48 |
immune system | 5.30e-11 | 48 |
hematopoietic system | 1.18e-09 | 45 |
blood island | 1.18e-09 | 45 |
bone marrow | 7.63e-08 | 16 |
bone element | 8.64e-08 | 22 |
skeletal element | 8.64e-08 | 22 |
skeletal system | 8.64e-08 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.