FFCP PHASE1:Hg19::chr3:32993065..32993074,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1233|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1605|TSSclassifier=S|UniProt=P51679,A0N0Q1|association_with_transcript=0bp_to_ENST00000330953,NM_005508,uc003cfg.1_5end|coexpression_cluster_id=C1361|description=CAGE_peak_3_at_CCR4_5end|id=chr3:32993065..32993074,+|ontology_enrichment_celltype=CL:0000084!1.11e-31!25;CL:0000827!1.11e-31!25;CL:0000838!4.61e-25!52;CL:0000542!2.11e-24!53;CL:0000051!2.11e-24!53;CL:0000791!3.89e-24!18;CL:0000789!3.89e-24!18;CL:0002420!3.89e-24!18;CL:0002419!3.89e-24!18;CL:0000790!3.89e-24!18;CL:0000738!5.42e-22!140;CL:0002087!4.36e-19!119;CL:0000988!9.58e-19!182;CL:0000037!1.30e-17!172;CL:0000566!1.30e-17!172;CL:0002031!1.76e-16!124;CL:0000625!9.89e-16!11;CL:0002032!2.52e-15!165;CL:0000837!2.52e-15!165;CL:0000624!7.16e-12!6;CL:0000080!9.77e-12!6|ontology_enrichment_celltype_v019=CL:0000084;2.13e-52;25!CL:0000791;2.52e-44;18!CL:0000789;2.52e-44;18!CL:0002419;2.52e-44;18!CL:0000625;1.46e-29;11!CL:0000624;3.61e-19;6!CL:0000542;6.96e-16;53!CL:0000898;3.50e-07;3|ontology_enrichment_celltype_v019_2=CL:0000084,2.02e-52,25;CL:0000827,2.02e-52,25;CL:0000791,1.96e-44,18;CL:0000789,1.96e-44,18;CL:0002420,1.96e-44,18;CL:0002419,1.96e-44,18;CL:0000790,1.96e-44,18;CL:0000625,1.09e-29,11;CL:0000838,8.07e-29,52;CL:0000542,3.47e-28,53;CL:0000051,3.47e-28,53;CL:0000624,3.76e-19,6;CL:0002087,7.98e-16,115;CL:0000738,1.48e-12,136;CL:0002031,3.78e-12,120;CL:0000988,1.27e-11,177;CL:0000037,3.65e-09,168;CL:0002032,7.58e-08,161;CL:0000837,7.58e-08,161;CL:0000898,3.51e-07,3;CL:0000623,9.89e-07,3;CL:0000825,9.89e-07,3|ontology_enrichment_development_v019=CL:0000790;2.52e-44;18!CL:0000051;6.96e-16;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!3.90e-13!15;UBERON:0000179!3.90e-13!15;UBERON:0000463!3.90e-13!15;UBERON:0002390!3.09e-08!102;UBERON:0003061!3.09e-08!102;UBERON:0002193!3.48e-08!112|ontology_enrichment_uberon_v019=UBERON:0000178;1.08e-17;15!UBERON:0000179;1.08e-17;15!UBERON:0000463;1.08e-17;15!UBERON:0002390;8.45e-11;32!UBERON:0002370;2.46e-09;2!UBERON:0005058;2.46e-09;2!UBERON:0009113;2.46e-09;2!UBERON:0002193;5.06e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.10e-17,15;UBERON:0000179,1.10e-17,15;UBERON:0000463,1.10e-17,15;UBERON:0002370,2.47e-10,4;UBERON:0005058,2.47e-10,4;UBERON:0009113,2.47e-10,4;UBERON:0003295,2.47e-10,4;UBERON:0005562,2.47e-10,4;UBERON:0003351,4.95e-07,6;UBERON:0001042,5.13e-07,10;UBERON:0009145,5.13e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0.730310090387373,0,0,0,0,0,0,0,0.152826811495903,0.246301768349837,0.0787107813136792,0.786728553697808,0.383829398097213,0.309632246632152,0,0,0,0,0,0.293600439334847,0,1.00272223735071,1.08505435357926,0.447830948479849,0.971680998056939,0,0,0,0,0.232429036905685,0.411167888021826,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0.580418477257168,0,0,0,0,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,1.68152568894461,0,9.24535919535015,7.46720449223413,11.5136839439725,26.0810932809458,0.651844533267181,0.946895611469467,0,18.8283672135943,22.3900489680876,20.3811183016931,18.6854665997861,28.0519990199229,26.4020475546553,5.26201294731764,4.69795030235942,7.53488022911136,0.14828656316206,0,0,12.803955724825,8.81407135284419,10.6524508099615,7.84361045260459,2.22995790026868,1.95325036156926,0,1.50575119077773,1.66382594500744,4.99722906209383,1.65744076430812,0.821127996921047,1.41124720257313,1.06976078313403,1.15859523106239,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352193736052904,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.394061520403854,3.23441362289276,1.66845947163673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,0.647142602455851,2.77491650288955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6970372701606,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,1.13929437434833,0.238231775457789,1.64544909234478,0,2.16012574895246,0,0,0,0,0,0,0.142283686696828,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34031106982705,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0.369254416383208,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0.476809736941136,0,0,0,0,0,0.176915129006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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1233 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1605 | |||
|TSSclassifier=S | |||
|UniProt=P51679,A0N0Q1 | |||
|association_with_transcript=0bp_to_ENST00000330953,NM_005508,uc003cfg.1_5end | |||
|coexpression_cluster_id=C1361 | |||
|description=CAGE_peak_3_at_CCR4_5end | |||
|id=chr3:32993065..32993074,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.11e-31!25;CL:0000827!1.11e-31!25;CL:0000838!4.61e-25!52;CL:0000542!2.11e-24!53;CL:0000051!2.11e-24!53;CL:0000791!3.89e-24!18;CL:0000789!3.89e-24!18;CL:0002420!3.89e-24!18;CL:0002419!3.89e-24!18;CL:0000790!3.89e-24!18;CL:0000738!5.42e-22!140;CL:0002087!4.36e-19!119;CL:0000988!9.58e-19!182;CL:0000037!1.30e-17!172;CL:0000566!1.30e-17!172;CL:0002031!1.76e-16!124;CL:0000625!9.89e-16!11;CL:0002032!2.52e-15!165;CL:0000837!2.52e-15!165;CL:0000624!7.16e-12!6;CL:0000080!9.77e-12!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.13e-52;25!CL:0000791;2.52e-44;18!CL:0000789;2.52e-44;18!CL:0002419;2.52e-44;18!CL:0000625;1.46e-29;11!CL:0000624;3.61e-19;6!CL:0000542;6.96e-16;53!CL:0000898;3.50e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.02e-52,25;CL:0000827,2.02e-52,25;CL:0000791,1.96e-44,18;CL:0000789,1.96e-44,18;CL:0002420,1.96e-44,18;CL:0002419,1.96e-44,18;CL:0000790,1.96e-44,18;CL:0000625,1.09e-29,11;CL:0000838,8.07e-29,52;CL:0000542,3.47e-28,53;CL:0000051,3.47e-28,53;CL:0000624,3.76e-19,6;CL:0002087,7.98e-16,115;CL:0000738,1.48e-12,136;CL:0002031,3.78e-12,120;CL:0000988,1.27e-11,177;CL:0000037,3.65e-09,168;CL:0002032,7.58e-08,161;CL:0000837,7.58e-08,161;CL:0000898,3.51e-07,3;CL:0000623,9.89e-07,3;CL:0000825,9.89e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.52e-44;18!CL:0000051;6.96e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.90e-13!15;UBERON:0000179!3.90e-13!15;UBERON:0000463!3.90e-13!15;UBERON:0002390!3.09e-08!102;UBERON:0003061!3.09e-08!102;UBERON:0002193!3.48e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.08e-17;15!UBERON:0000179;1.08e-17;15!UBERON:0000463;1.08e-17;15!UBERON:0002390;8.45e-11;32!UBERON:0002370;2.46e-09;2!UBERON:0005058;2.46e-09;2!UBERON:0009113;2.46e-09;2!UBERON:0002193;5.06e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.10e-17,15;UBERON:0000179,1.10e-17,15;UBERON:0000463,1.10e-17,15;UBERON:0002370,2.47e-10,4;UBERON:0005058,2.47e-10,4;UBERON:0009113,2.47e-10,4;UBERON:0003295,2.47e-10,4;UBERON:0005562,2.47e-10,4;UBERON:0003351,4.95e-07,6;UBERON:0001042,5.13e-07,10;UBERON:0009145,5.13e-07,10 | |||
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|short_description=p3@CCR4 | |||
}} |
Revision as of 23:52, 12 September 2013
Short description: | p3@CCR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CCR4_5end |
Coexpression cluster: | C1361_CD4_cord_mycosis_hairy_CD8_Whole_thymus |
Association with transcript: | 0bp_to_ENST00000330953, NM_005508, uc003cfg.1_5end |
EntrezGene: | CCR4 |
HGNC: | 1605 |
UniProt: | P51679A0N0Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.02e-52 | 25 |
pro-T cell | 2.02e-52 | 25 |
mature alpha-beta T cell | 1.96e-44 | 18 |
alpha-beta T cell | 1.96e-44 | 18 |
immature T cell | 1.96e-44 | 18 |
mature T cell | 1.96e-44 | 18 |
immature alpha-beta T cell | 1.96e-44 | 18 |
CD8-positive, alpha-beta T cell | 1.09e-29 | 11 |
lymphoid lineage restricted progenitor cell | 8.07e-29 | 52 |
lymphocyte | 3.47e-28 | 53 |
common lymphoid progenitor | 3.47e-28 | 53 |
CD4-positive, alpha-beta T cell | 3.76e-19 | 6 |
nongranular leukocyte | 7.98e-16 | 115 |
leukocyte | 1.48e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 3.78e-12 | 120 |
hematopoietic cell | 1.27e-11 | 177 |
hematopoietic stem cell | 3.65e-09 | 168 |
hematopoietic oligopotent progenitor cell | 7.58e-08 | 161 |
hematopoietic multipotent progenitor cell | 7.58e-08 | 161 |
naive T cell | 3.51e-07 | 3 |
natural killer cell | 9.89e-07 | 3 |
pro-NK cell | 9.89e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.10e-17 | 15 |
haemolymphatic fluid | 1.10e-17 | 15 |
organism substance | 1.10e-17 | 15 |
thymus | 2.47e-10 | 4 |
hemolymphoid system gland | 2.47e-10 | 4 |
thymic region | 2.47e-10 | 4 |
pharyngeal gland | 2.47e-10 | 4 |
thymus primordium | 2.47e-10 | 4 |
pharyngeal epithelium | 4.95e-07 | 6 |
chordate pharynx | 5.13e-07 | 10 |
pharyngeal region of foregut | 5.13e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.