FFCP PHASE1:Mm9::chr12:3806513..3806527,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13435|HGNC=|UniProt=G3UX07,Q3TYD7|association_with_transcript=0bp_to_ENSMUST00000172719,uc007mxa.2_5end|description=CAGE_peak_9_at_Dnmt3a_5end|id=chr12:3806513..3806527,+|ontology_enrichment_celltype=CL:0000117!5.29e-08!23;CL:0000337!5.29e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.98e-10,23;CL:0000337,1.98e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.11e-09,5;UBERON:0002315,2.11e-09,5;UBERON:0002240,1.06e-07,6;UBERON:0005174,1.06e-07,6;UBERON:0001137,1.06e-07,6|phase1_expression=0.640595388419176,0.697950815278722,0.909998478779072,1.20985684522732,0.500895729946347,1.34303417529512,0.934450562382103,0.258246646883153,1.54867594366833,2.80877431586392,1.19852577757853,0.638177271962691,0.171200729931206,0.262261207256992,0,0,0,0.473193248037357,0.548457734422955,0.42438965179803,0.255129870453209,0.297872853602656,0.783599367416806,0.639969691173627,0.68822784320151,1.72269589234506,0,0.430942465371778,0.190023419456374,0.756090389279792,0.221730510655305,0,0,0,0.288851619751275,0,0.204169356262369,0.418531630736908,0,0,0,0,0.485510353031154,0,0,0,0,0.436050312760893,0.219686182734472,0,0.279972843250725,0,0.503347818173209,0.725362142011344,0.672187598284928,0.257259436035947,0,0.515672092277442,1.82084814773638,0.528990979272033,1.90149421051854,0.677689064138264,0,0,0,0,0.299600110518405,0.384218305321555,0.725827286159344,0.675029691658453,0.630974884054146,2.28520787523043,1.98781686856452,0.367472397644862,0.862609239164127,1.83843757322004,1.10115880999389,1.40456071893706,0.46081959976873,1.18697658957174,1.37231465403614,1.04182674111352,1.11673199600552,0.56276261003168,0.61119299110724,2.06240009831567,3.27454865837937,4.10078780815661,0.302904773332736,0.453429360640713,1.73918693221007,1.72084775396277,0,0,0.649776417447669,0.448026887097336,0,0,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.506719730950197,0,0.45673551887624,0.517875767294343,0.148442139064825,0.520455980298408,0.913396434936424,0.691846491768175,0.301445281105245,0.470354828542819,0.251333182659351,0.741584903203122,0.144599356919912,0,0.485300549842228,1.10420759230197,0.484875253135222,0,1.17112318804619,1.67557365450764,0.510914110417183,0.718890747035522,0,0,0.149790639404823,0.457500602818626,1.13088916901578,0,1.02286182932132,0.20778804455956,1.29793010454206,0.305518091550949,0.622034853050465,0,0.841767423545896,0.390361328888111,0.459804208866946,0.360124259610698,0.90422890701429,0.816437989815934,0.512454881139399,1.59292931751539,1.55222022443409,0.646703978798527,0.378212160335639,1.40760899331159,0.657587197282725,0,0.696504333044333,0.411564272815887,0.796137067273973,0,0.51469581422943,0,1.03562886267751,0.938104239924385,0.36012412292203,0.710234206755631,0.393528463494808,0.925602677324269,0.232533944750408,0.536546802799238,0.817357396570186,0.658239399653922,0.32833492815819,0.56748166682099,0.438599962275997,0.658650345873152,0.536825675041487,0,0.411618449517138,0,0.793351699990633,0,2.32236671860439,2.57734922644187,0.80673409849337,0.889512175379481,0.190225626112559,2.37264530772256,1.81168850196412,1.00534083520108,0.596869416123452,0.58489226135736,0.898819408654221,0.432276099749388,1.1948476395262,0.569003702859245,0.456994050438915,0,0.610953983535943,0.775809948670503,0.841629838683823,0.632365371242573,0.295220295959204,0,1.1105744752962,0.296452627087149,0.333690211432188,0,0.224862112384854,0,0.241177159752417,0.25462585178142,0.287696137450811,0.324270453550071,0.274561413188081,1.43768206527355,1.11642284300551,0.312037673114561,0.252578877947112,0.358794827043824,0.482443521363367,0.369506380333209,0.757965647081939,0.814824882210129,0.848725428875941,0.234690248288502,0.837531287209079,0.238043640886014,0.390267295715598,0.157635144106191,1.10732344824387,0.956728611944923,0.81931657357869,0.863424909329478,0.144649058581512,1.50791283939272,0.54390568381871,0,0.275936746304732,0.160550589987792,0.586058432961016,0,0,0.631016438832513,0,0.646270193198397,0.477937595905104,0.222798674082394,0.283076530788832,0,0.292255857911312,0.395287777946524,1.28528526568723,0,1.24645922567079,0.977321756121456,0.329940245945071,0,0.485561272309963,0.906970670894253,0.188605079755898,0.295301892880773,0,0.516856586336442,0.727067458955011,0.356497378384721,0.316036757935816,0,0,0,0,0.646793418913773,0.643011105094777,1.41872186913819,1.78368817602071,0.822745103010605,0.304464949114599,0,0.42366414172764,0,0.16488625294148,0.645857706783622,0.422190474497091,0.238744688006273,0.492422699235184,0.874442509889552,0.18542530201051,0.512612642393558,1.23832120777933,0.185194527369712,0.376736914009382,0.546776910884101,0,0.169978429993855,0.139951452323658,0.138199973804424,0,1.26534397432454,0.813277868507395,0.216010681643603,0.209088296014469,1.09181281873089,0.134864346384821,1.07449492442937,0.523511883968059,0.259229946583586,0.621339313086926,0,0.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| ||
|EntrezGene=13435 | |||
|HGNC= | |||
|UniProt=G3UX07,Q3TYD7 | |||
|association_with_transcript=0bp_to_ENSMUST00000172719,uc007mxa.2_5end | |||
|description=CAGE_peak_9_at_Dnmt3a_5end | |||
|id=chr12:3806513..3806527,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.29e-08!23;CL:0000337!5.29e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.98e-10,23;CL:0000337,1.98e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.11e-09,5;UBERON:0002315,2.11e-09,5;UBERON:0002240,1.06e-07,6;UBERON:0005174,1.06e-07,6;UBERON:0001137,1.06e-07,6 | |||
|phase1_expression=0.640595388419176,0.697950815278722,0.909998478779072,1.20985684522732,0.500895729946347,1.34303417529512,0.934450562382103,0.258246646883153,1.54867594366833,2.80877431586392,1.19852577757853,0.638177271962691,0.171200729931206,0.262261207256992,0,0,0,0.473193248037357,0.548457734422955,0.42438965179803,0.255129870453209,0.297872853602656,0.783599367416806,0.639969691173627,0.68822784320151,1.72269589234506,0,0.430942465371778,0.190023419456374,0.756090389279792,0.221730510655305,0,0,0,0.288851619751275,0,0.204169356262369,0.418531630736908,0,0,0,0,0.485510353031154,0,0,0,0,0.436050312760893,0.219686182734472,0,0.279972843250725,0,0.503347818173209,0.725362142011344,0.672187598284928,0.257259436035947,0,0.515672092277442,1.82084814773638,0.528990979272033,1.90149421051854,0.677689064138264,0,0,0,0,0.299600110518405,0.384218305321555,0.725827286159344,0.675029691658453,0.630974884054146,2.28520787523043,1.98781686856452,0.367472397644862,0.862609239164127,1.83843757322004,1.10115880999389,1.40456071893706,0.46081959976873,1.18697658957174,1.37231465403614,1.04182674111352,1.11673199600552,0.56276261003168,0.61119299110724,2.06240009831567,3.27454865837937,4.10078780815661,0.302904773332736,0.453429360640713,1.73918693221007,1.72084775396277,0,0,0.649776417447669,0.448026887097336,0,0,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.506719730950197,0,0.45673551887624,0.517875767294343,0.148442139064825,0.520455980298408,0.913396434936424,0.691846491768175,0.301445281105245,0.470354828542819,0.251333182659351,0.741584903203122,0.144599356919912,0,0.485300549842228,1.10420759230197,0.484875253135222,0,1.17112318804619,1.67557365450764,0.510914110417183,0.718890747035522,0,0,0.149790639404823,0.457500602818626,1.13088916901578,0,1.02286182932132,0.20778804455956,1.29793010454206,0.305518091550949,0.622034853050465,0,0.841767423545896,0.390361328888111,0.459804208866946,0.360124259610698,0.90422890701429,0.816437989815934,0.512454881139399,1.59292931751539,1.55222022443409,0.646703978798527,0.378212160335639,1.40760899331159,0.657587197282725,0,0.696504333044333,0.411564272815887,0.796137067273973,0,0.51469581422943,0,1.03562886267751,0.938104239924385,0.36012412292203,0.710234206755631,0.393528463494808,0.925602677324269,0.232533944750408,0.536546802799238,0.817357396570186,0.658239399653922,0.32833492815819,0.56748166682099,0.438599962275997,0.658650345873152,0.536825675041487,0,0.411618449517138,0,0.793351699990633,0,2.32236671860439,2.57734922644187,0.80673409849337,0.889512175379481,0.190225626112559,2.37264530772256,1.81168850196412,1.00534083520108,0.596869416123452,0.58489226135736,0.898819408654221,0.432276099749388,1.1948476395262,0.569003702859245,0.456994050438915,0,0.610953983535943,0.775809948670503,0.841629838683823,0.632365371242573,0.295220295959204,0,1.1105744752962,0.296452627087149,0.333690211432188,0,0.224862112384854,0,0.241177159752417,0.25462585178142,0.287696137450811,0.324270453550071,0.274561413188081,1.43768206527355,1.11642284300551,0.312037673114561,0.252578877947112,0.358794827043824,0.482443521363367,0.369506380333209,0.757965647081939,0.814824882210129,0.848725428875941,0.234690248288502,0.837531287209079,0.238043640886014,0.390267295715598,0.157635144106191,1.10732344824387,0.956728611944923,0.81931657357869,0.863424909329478,0.144649058581512,1.50791283939272,0.54390568381871,0,0.275936746304732,0.160550589987792,0.586058432961016,0,0,0.631016438832513,0,0.646270193198397,0.477937595905104,0.222798674082394,0.283076530788832,0,0.292255857911312,0.395287777946524,1.28528526568723,0,1.24645922567079,0.977321756121456,0.329940245945071,0,0.485561272309963,0.906970670894253,0.188605079755898,0.295301892880773,0,0.516856586336442,0.727067458955011,0.356497378384721,0.316036757935816,0,0,0,0,0.646793418913773,0.643011105094777,1.41872186913819,1.78368817602071,0.822745103010605,0.304464949114599,0,0.42366414172764,0,0.16488625294148,0.645857706783622,0.422190474497091,0.238744688006273,0.492422699235184,0.874442509889552,0.18542530201051,0.512612642393558,1.23832120777933,0.185194527369712,0.376736914009382,0.546776910884101,0,0.169978429993855,0.139951452323658,0.138199973804424,0,1.26534397432454,0.813277868507395,0.216010681643603,0.209088296014469,1.09181281873089,0.134864346384821,1.07449492442937,0.523511883968059,0.259229946583586,0.621339313086926,0,0.747582730219894,0.992750942742586,0.972255941720238,0.904118764344118,0.337912250981556,1.05621514781179,0.651021924219751,0.419437377702843,0.241584120826006,0,0,0.202725215290164,0.308132871494482,0.389762468933385,0.358053391334963,0.39736270956253,1.68273629327956,1.18151621739662,0.605798699688886,0.609654453239999,1.31074040677893,0.487289403698762,0.673482891482306,0.350630706544707,0.226730383615211,0.221985953374065,0.269141569828427,1.17519231454855,0.386379188064381,0.375364950902364,0.183151624267265,0,0,0,0,1.14579102687879,0.859265911718438,0.685082519770642,0,0.675022500231806,0,0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| |||
|short_description=p9@Dnmt3a | |||
}} | |||
Revision as of 22:47, 12 September 2013
| Short description: | p9@Dnmt3a |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_9_at_Dnmt3a_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000172719, uc007mxa.2_5end |
| EntrezGene: | Dnmt3a |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.98e-10 | 23 |
| neuroblast (sensu Vertebrata) | 1.98e-10 | 23 |
| Ontology term | p-value | n |
|---|---|---|
| regional part of spinal cord | 2.11e-09 | 5 |
| gray matter of spinal cord | 2.11e-09 | 5 |
| spinal cord | 1.06e-07 | 6 |
| dorsal region element | 1.06e-07 | 6 |
| dorsum | 1.06e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
