FFCP PHASE1:Mm9::chr12:101422436..101422460,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:101422436..101422460,+|id=chr12:101422436..101422460,+|ontology_enrichment_celltype=CL:0002563!3.65e-14!9;CL:0002251!3.65e-14!9;CL:0000239!1.86e-12!6;CL:0000677!1.86e-12!6;CL:0000212!1.86e-12!6;CL:0000584!1.86e-12!6;CL:0000075!1.52e-10!7;CL:0002076!9.23e-10!15;CL:0000066!7.78e-08!25;CL:0000063!4.02e-07!66;CL:0000223!7.67e-07!20|ontology_enrichment_celltype_v019_2=CL:0002563,7.67e-22,9;CL:0002251,7.67e-22,9;CL:0000239,3.08e-15,6;CL:0000677,3.08e-15,6;CL:0000584,3.08e-15,6;CL:0000066,3.63e-13,25;CL:0000075,4.26e-13,7;CL:0002076,5.55e-13,15;CL:0000223,1.21e-09,20;CL:0002250,3.61e-08,3;CL:0000682,6.43e-08,3|ontology_enrichment_disease=DOID:0060100!2.03e-07!3;DOID:4045!2.03e-07!3|ontology_enrichment_disease_v019_2=DOID:0060100,1.06e-17,3;DOID:4045,1.06e-17,3;DOID:0050686,3.98e-09,6|ontology_enrichment_uberon=UBERON:0003350!3.65e-14!9;UBERON:0004808!3.65e-14!9;UBERON:0001277!3.65e-14!9;UBERON:0000485!2.79e-11!11;UBERON:0000344!1.28e-09!15;UBERON:0004923!2.18e-09!24;UBERON:0001242!2.73e-09!13;UBERON:0000060!2.73e-09!13;UBERON:0001262!2.73e-09!13;UBERON:0004786!2.73e-09!13|ontology_enrichment_uberon_v019_2=UBERON:0003350,7.67e-22,9;UBERON:0004808,7.67e-22,9;UBERON:0001277,7.67e-22,9;UBERON:0000485,8.06e-18,11;UBERON:0001242,4.96e-15,13;UBERON:0001262,4.96e-15,13;UBERON:0004786,4.96e-15,13;UBERON:0000344,5.55e-13,15;UBERON:0004923,5.71e-08,24|phase1_expression=0,2.44282785347553,0.454999239389536,3.32710632437513,3.50627010962443,1.17515490338323,0.467225281191051,0,0,0,0,0,0,0,0.333109761815663,0,0,0.315462165358238,0,0.42438965179803,0,0.496454756004426,0.783599367416806,0.159992422793407,0,0,1.29228598847722,1.07735616342945,0,0,0,0,0,0,1.44425809875637,0,2.24586291888606,5.02237956884289,2.3440060335714,3.14114246384279,27.0586484494267,5.46436387966757,2.42755176515577,0,0,0,0,0,0,0,0,0,0.335565212115473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45462575940567,0,0,0,0,0.599075622529601,0,0.127070227073065,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0.206386867963223,0,0,0.27338845544205,0.228778173206523,0.509935289981566,1.11961161858926,0.690999869022119,0,0,0,0,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:101422436..101422460,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:101422436..101422460,+ | |||
|id=chr12:101422436..101422460,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.65e-14!9;CL:0002251!3.65e-14!9;CL:0000239!1.86e-12!6;CL:0000677!1.86e-12!6;CL:0000212!1.86e-12!6;CL:0000584!1.86e-12!6;CL:0000075!1.52e-10!7;CL:0002076!9.23e-10!15;CL:0000066!7.78e-08!25;CL:0000063!4.02e-07!66;CL:0000223!7.67e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.67e-22,9;CL:0002251,7.67e-22,9;CL:0000239,3.08e-15,6;CL:0000677,3.08e-15,6;CL:0000584,3.08e-15,6;CL:0000066,3.63e-13,25;CL:0000075,4.26e-13,7;CL:0002076,5.55e-13,15;CL:0000223,1.21e-09,20;CL:0002250,3.61e-08,3;CL:0000682,6.43e-08,3 | |||
|ontology_enrichment_disease=DOID:0060100!2.03e-07!3;DOID:4045!2.03e-07!3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,1.06e-17,3;DOID:4045,1.06e-17,3;DOID:0050686,3.98e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0003350!3.65e-14!9;UBERON:0004808!3.65e-14!9;UBERON:0001277!3.65e-14!9;UBERON:0000485!2.79e-11!11;UBERON:0000344!1.28e-09!15;UBERON:0004923!2.18e-09!24;UBERON:0001242!2.73e-09!13;UBERON:0000060!2.73e-09!13;UBERON:0001262!2.73e-09!13;UBERON:0004786!2.73e-09!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,7.67e-22,9;UBERON:0004808,7.67e-22,9;UBERON:0001277,7.67e-22,9;UBERON:0000485,8.06e-18,11;UBERON:0001242,4.96e-15,13;UBERON:0001262,4.96e-15,13;UBERON:0004786,4.96e-15,13;UBERON:0000344,5.55e-13,15;UBERON:0004923,5.71e-08,24 | |||
|phase1_expression=0,2.44282785347553,0.454999239389536,3.32710632437513,3.50627010962443,1.17515490338323,0.467225281191051,0,0,0,0,0,0,0,0.333109761815663,0,0,0.315462165358238,0,0.42438965179803,0,0.496454756004426,0.783599367416806,0.159992422793407,0,0,1.29228598847722,1.07735616342945,0,0,0,0,0,0,1.44425809875637,0,2.24586291888606,5.02237956884289,2.3440060335714,3.14114246384279,27.0586484494267,5.46436387966757,2.42755176515577,0,0,0,0,0,0,0,0,0,0.335565212115473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45462575940567,0,0,0,0,0.599075622529601,0,0.127070227073065,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0.206386867963223,0,0,0.27338845544205,0.228778173206523,0.509935289981566,1.11961161858926,0.690999869022119,0,0,0,0,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:101422436..101422460,+ | |||
}} |
Revision as of 21:57, 12 September 2013
Short description: | p@chr12:101422436..101422460, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:101422436..101422460, + |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.67e-22 | 9 |
epithelial cell of alimentary canal | 7.67e-22 | 9 |
brush border epithelial cell | 3.08e-15 | 6 |
gut absorptive cell | 3.08e-15 | 6 |
enterocyte | 3.08e-15 | 6 |
epithelial cell | 3.63e-13 | 25 |
columnar/cuboidal epithelial cell | 4.26e-13 | 7 |
endo-epithelial cell | 5.55e-13 | 15 |
endodermal cell | 1.21e-09 | 20 |
intestinal crypt stem cell | 3.61e-08 | 3 |
M cell of gut | 6.43e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 7.67e-22 | 9 |
gastrointestinal system epithelium | 7.67e-22 | 9 |
intestinal epithelium | 7.67e-22 | 9 |
simple columnar epithelium | 8.06e-18 | 11 |
intestinal mucosa | 4.96e-15 | 13 |
wall of intestine | 4.96e-15 | 13 |
gastrointestinal system mucosa | 4.96e-15 | 13 |
mucosa | 5.55e-13 | 15 |
organ component layer | 5.71e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.06e-17 | 3 |
muscle cancer | 1.06e-17 | 3 |
organ system cancer | 3.98e-09 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.