FFCP PHASE1:Hg19::chr3:13670704..13670708,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C943|description=CAGE_peak_at_chr3:13670704..13670708,+|id=chr3:13670704..13670708,+|ontology_enrichment_celltype=CL:0000057!3.28e-15!75;CL:0002334!2.18e-13!12;CL:0002620!5.87e-11!23;CL:0000136!1.54e-10!15;CL:0000055!2.52e-10!180;CL:0002615!8.33e-07!3|ontology_enrichment_celltype_v019=CL:0002615;3.39e-27;3!CL:0000136;7.10e-24;13!CL:0002617;3.75e-18;2!CL:0002334;3.96e-18;12!CL:0000135;2.00e-12;3!CL:0002579;2.00e-12;3!CL:0000214;2.00e-12;3!CL:0000388;2.00e-12;3!CL:0002581;1.89e-10;1!CL:0002591;6.05e-10;1|ontology_enrichment_celltype_v019_2=CL:0002615,2.28e-27,3;CL:0000136,1.35e-20,15;CL:0002334,5.20e-18,12;CL:0002617,6.35e-18,2;CL:0000214,9.38e-13,3;CL:0000135,1.26e-12,3;CL:0000388,1.26e-12,3;CL:0002579,2.52e-12,3;CL:0002581,1.80e-10,1;CL:0002591,6.91e-10,1;CL:0000057,5.18e-08,76;CL:0000134,1.69e-07,354;CL:0000048,2.34e-07,427;CL:0002320,2.77e-07,361;CL:0000723,3.32e-07,433;CL:0000034,5.23e-07,441|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!2.93e-08!5;DOID:450!2.93e-08!5;DOID:66!2.93e-08!5;DOID:423!2.93e-08!5;DOID:0080000!2.93e-08!5;DOID:11722!2.93e-08!5|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003688!2.69e-11!6;UBERON:0002358!2.69e-11!6;UBERON:0003684!2.69e-11!6;UBERON:0001178!2.69e-11!6;UBERON:0004457!5.15e-11!12;UBERON:0000042!5.15e-11!12;UBERON:0004923!1.72e-08!57;UBERON:0002199!1.81e-07!45;UBERON:0002416!1.81e-07!45|ontology_enrichment_uberon_v019=UBERON:0004457;1.86e-46;9!UBERON:0000042;1.86e-46;9!UBERON:0003688;2.83e-36;6!UBERON:0002358;2.83e-36;6!UBERON:0003684;2.83e-36;6!UBERON:0001178;2.83e-36;6!UBERON:0007846;2.00e-12;3!UBERON:0006915;2.00e-12;3!UBERON:0007616;2.00e-12;3!UBERON:0000043;2.00e-12;3!UBERON:0007845;2.00e-12;3!UBERON:0002217;2.00e-12;3!UBERON:0002018;2.00e-12;3!UBERON:0000310;2.09e-08;10!UBERON:0001443;1.10e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.74e-36,6;UBERON:0002358,2.74e-36,6;UBERON:0003684,2.74e-36,6;UBERON:0001178,2.74e-36,6;UBERON:0004457,5.37e-35,12;UBERON:0000042,5.37e-35,12;UBERON:0006915,9.38e-13,3;UBERON:0007616,9.38e-13,3;UBERON:0002217,9.38e-13,3;UBERON:0002018,9.38e-13,3;UBERON:0007846,1.26e-12,3;UBERON:0000043,1.26e-12,3;UBERON:0007845,1.26e-12,3;UBERON:0004923,1.57e-09,66;UBERON:0000310,2.34e-08,10;UBERON:0004458,4.99e-08,49;UBERON:0001443,1.22e-07,11;UBERON:0002384,5.42e-07,371|phase1_expression=1.09007027562334,1.07050261945492,1.55049844505568,4.00293193412522,2.68176656656373,0.872338524100369,2.53299878168311,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.289693037921647,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.132409180813219,5.16305917347865,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.538168907066586,0.85422955527427,0.211931901159562,1.20036438433761,0.103052529238439,0.772921620136887,0.558350568994769,0.506328996723799,0.68205903612839,0.504867548488229,0.460249493211497,0.646584227275248,0.710019185033229,0.10075209822764,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,2.57296375277154,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0.355391948742546,0.791951872933429,0.301439377059586,0,0.899756920638513,0,0,0,0.239624855491583,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.623912584592421,0.356857977594324,0,0.117141414992713,0,0,1.03473071292505,0,0,0.347534457872331,0.195801157462741,0.343143423810856,0,0.215714200818617,0,0,0,0.30239029332968,0.744323423456331,0.61384789315225,2.80660094433074,1.53766979106841,1.02341449813341,0.321707842287215,4.45254199334973,0.462629081407967,0,0,1.03850885836724,0.232420756919918,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0.424216295861138,1.13008116620243,0,1.32687795048244,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,1.68886108238131,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C943 | |||
|description=CAGE_peak_at_chr3:13670704..13670708,+ | |||
|id=chr3:13670704..13670708,+ | |||
|ontology_enrichment_celltype=CL:0000057!3.28e-15!75;CL:0002334!2.18e-13!12;CL:0002620!5.87e-11!23;CL:0000136!1.54e-10!15;CL:0000055!2.52e-10!180;CL:0002615!8.33e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002615;3.39e-27;3!CL:0000136;7.10e-24;13!CL:0002617;3.75e-18;2!CL:0002334;3.96e-18;12!CL:0000135;2.00e-12;3!CL:0002579;2.00e-12;3!CL:0000214;2.00e-12;3!CL:0000388;2.00e-12;3!CL:0002581;1.89e-10;1!CL:0002591;6.05e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,2.28e-27,3;CL:0000136,1.35e-20,15;CL:0002334,5.20e-18,12;CL:0002617,6.35e-18,2;CL:0000214,9.38e-13,3;CL:0000135,1.26e-12,3;CL:0000388,1.26e-12,3;CL:0002579,2.52e-12,3;CL:0002581,1.80e-10,1;CL:0002591,6.91e-10,1;CL:0000057,5.18e-08,76;CL:0000134,1.69e-07,354;CL:0000048,2.34e-07,427;CL:0002320,2.77e-07,361;CL:0000723,3.32e-07,433;CL:0000034,5.23e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!2.93e-08!5;DOID:450!2.93e-08!5;DOID:66!2.93e-08!5;DOID:423!2.93e-08!5;DOID:0080000!2.93e-08!5;DOID:11722!2.93e-08!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!2.69e-11!6;UBERON:0002358!2.69e-11!6;UBERON:0003684!2.69e-11!6;UBERON:0001178!2.69e-11!6;UBERON:0004457!5.15e-11!12;UBERON:0000042!5.15e-11!12;UBERON:0004923!1.72e-08!57;UBERON:0002199!1.81e-07!45;UBERON:0002416!1.81e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.86e-46;9!UBERON:0000042;1.86e-46;9!UBERON:0003688;2.83e-36;6!UBERON:0002358;2.83e-36;6!UBERON:0003684;2.83e-36;6!UBERON:0001178;2.83e-36;6!UBERON:0007846;2.00e-12;3!UBERON:0006915;2.00e-12;3!UBERON:0007616;2.00e-12;3!UBERON:0000043;2.00e-12;3!UBERON:0007845;2.00e-12;3!UBERON:0002217;2.00e-12;3!UBERON:0002018;2.00e-12;3!UBERON:0000310;2.09e-08;10!UBERON:0001443;1.10e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.74e-36,6;UBERON:0002358,2.74e-36,6;UBERON:0003684,2.74e-36,6;UBERON:0001178,2.74e-36,6;UBERON:0004457,5.37e-35,12;UBERON:0000042,5.37e-35,12;UBERON:0006915,9.38e-13,3;UBERON:0007616,9.38e-13,3;UBERON:0002217,9.38e-13,3;UBERON:0002018,9.38e-13,3;UBERON:0007846,1.26e-12,3;UBERON:0000043,1.26e-12,3;UBERON:0007845,1.26e-12,3;UBERON:0004923,1.57e-09,66;UBERON:0000310,2.34e-08,10;UBERON:0004458,4.99e-08,49;UBERON:0001443,1.22e-07,11;UBERON:0002384,5.42e-07,371 | |||
|phase1_expression=1.09007027562334,1.07050261945492,1.55049844505568,4.00293193412522,2.68176656656373,0.872338524100369,2.53299878168311,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.289693037921647,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.132409180813219,5.16305917347865,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.538168907066586,0.85422955527427,0.211931901159562,1.20036438433761,0.103052529238439,0.772921620136887,0.558350568994769,0.506328996723799,0.68205903612839,0.504867548488229,0.460249493211497,0.646584227275248,0.710019185033229,0.10075209822764,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,2.57296375277154,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0.355391948742546,0.791951872933429,0.301439377059586,0,0.899756920638513,0,0,0,0.239624855491583,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.623912584592421,0.356857977594324,0,0.117141414992713,0,0,1.03473071292505,0,0,0.347534457872331,0.195801157462741,0.343143423810856,0,0.215714200818617,0,0,0,0.30239029332968,0.744323423456331,0.61384789315225,2.80660094433074,1.53766979106841,1.02341449813341,0.321707842287215,4.45254199334973,0.462629081407967,0,0,1.03850885836724,0.232420756919918,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0.424216295861138,1.13008116620243,0,1.32687795048244,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,1.68886108238131,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0.999048047910651,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.837847203816763,0.229160424011684,0.717873024576814,0.599037001496973,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0,0.686520205190771,0.756154618816195,0.777186002913902,0,0,0,0,0,0.797525143673985,0.521745061811734,1.05180326298053,0,0,0,0,0,0,0,0.343395705182793,0.673498977531838,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0.371995018166751,1.38652688589425,1.73050624849516,0,0,0.126698501011437,0,0.26721740526556,0,0,0.151557396436479,0,0,0,0.426467963801962,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0.665756774185513,0.201273793591026,0 | |||
|short_description=p@chr3:13670704..13670708,+ | |||
}} |
Revision as of 21:43, 12 September 2013
Short description: | p@chr3:13670704..13670708, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:13670704..13670708, + |
Coexpression cluster: | C943_Mesenchymal_Preadipocyte_Fibroblast_Adipocyte_Synoviocyte_Hair_Mesothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 2.28e-27 | 3 |
fat cell | 1.35e-20 | 15 |
preadipocyte | 5.20e-18 | 12 |
adipocyte of breast | 6.35e-18 | 2 |
synovial cell | 9.38e-13 | 3 |
fibrocyte | 1.26e-12 | 3 |
tendon cell | 1.26e-12 | 3 |
omentum preadipocyte | 2.52e-12 | 3 |
perirenal preadipocyte | 1.80e-10 | 1 |
smooth muscle cell of the pulmonary artery | 6.91e-10 | 1 |
fibroblast | 5.18e-08 | 76 |
mesenchymal cell | 1.69e-07 | 354 |
multi fate stem cell | 2.34e-07 | 427 |
connective tissue cell | 2.77e-07 | 361 |
somatic stem cell | 3.32e-07 | 433 |
stem cell | 5.23e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.74e-36 | 6 |
peritoneum | 2.74e-36 | 6 |
abdominal cavity | 2.74e-36 | 6 |
visceral peritoneum | 2.74e-36 | 6 |
cavity lining | 5.37e-35 | 12 |
serous membrane | 5.37e-35 | 12 |
stratified squamous epithelium | 9.38e-13 | 3 |
layer of synovial tissue | 9.38e-13 | 3 |
synovial joint | 9.38e-13 | 3 |
synovial membrane of synovial joint | 9.38e-13 | 3 |
dense regular connective tissue | 1.26e-12 | 3 |
tendon | 1.26e-12 | 3 |
regular connective tissue | 1.26e-12 | 3 |
organ component layer | 1.57e-09 | 66 |
breast | 2.34e-08 | 10 |
body cavity or lining | 4.99e-08 | 49 |
chest | 1.22e-07 | 11 |
connective tissue | 5.42e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.