FFCP PHASE1:Hg19::chr3:13612256..13612291,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C943|description=CAGE_peak_at_chr3:13612256..13612291,+|id=chr3:13612256..13612291,+|ontology_enrichment_celltype=CL:0000057!5.52e-16!75;CL:0000055!1.90e-14!180;CL:0000136!2.68e-11!15;CL:0002334!3.85e-10!12|ontology_enrichment_celltype_v019=CL:0000136;6.98e-15;13!CL:0002334;7.45e-15;12!CL:0002620;1.23e-12;23!CL:0002559;1.01e-09;5!CL:0000057;1.75e-08;73!CL:0002615;1.12e-07;3!CL:0000135;2.53e-07;3!CL:0000388;2.53e-07;3!CL:0002521;3.04e-07;3!CL:0002579;8.89e-07;3|ontology_enrichment_celltype_v019_2=CL:0000057,7.69e-23,76;CL:0000136,8.66e-18,15;CL:0002334,1.25e-14,12;CL:0002620,9.01e-13,23;CL:0002559,9.26e-10,5;CL:0002615,1.13e-07,3;CL:0000135,2.44e-07,3;CL:0000388,2.44e-07,3;CL:0002521,3.53e-07,3;CL:0002320,6.57e-07,361;CL:0000134,7.10e-07,354;CL:0002494,8.13e-07,16|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;3.30e-09;5!DOID:450;3.30e-09;5!DOID:66;3.30e-09;5!DOID:423;3.30e-09;5!DOID:0080000;3.30e-09;5!DOID:11722;3.30e-09;5|ontology_enrichment_disease_v019_2=DOID:17,1.75e-09,5;DOID:450,1.75e-09,5;DOID:66,1.75e-09,5;DOID:423,1.75e-09,5;DOID:0080000,1.75e-09,5;DOID:11722,1.75e-09,5|ontology_enrichment_uberon=UBERON:0007100!3.58e-11!27;UBERON:0000948!3.90e-10!24;UBERON:0005498!3.90e-10!24;UBERON:0004140!3.90e-10!24;UBERON:0009881!3.90e-10!24;UBERON:0004141!3.90e-10!24;UBERON:0003084!3.90e-10!24;UBERON:0007005!3.90e-10!24;UBERON:0004139!3.90e-10!24;UBERON:0004291!3.90e-10!24;UBERON:0001013!1.20e-08!14;UBERON:0004872!5.21e-08!84;UBERON:0004923!8.45e-08!57;UBERON:0003102!3.09e-07!95;UBERON:0003688!9.31e-07!6;UBERON:0002358!9.31e-07!6;UBERON:0003684!9.31e-07!6;UBERON:0001178!9.31e-07!6|ontology_enrichment_uberon_v019=UBERON:0001013;1.27e-15;14!UBERON:0004457;1.05e-14;9!UBERON:0000042;1.05e-14;9!UBERON:0003688;8.75e-13;6!UBERON:0002358;8.75e-13;6!UBERON:0003684;8.75e-13;6!UBERON:0001178;8.75e-13;6!UBERON:0002072;2.98e-10;5!UBERON:0002199;3.65e-10;46!UBERON:0002416;3.65e-10;46!UBERON:0002073;1.01e-09;5!UBERON:0002097;5.07e-09;41!UBERON:0003102;8.76e-09;50!UBERON:0000948;1.24e-08;22!UBERON:0007846;2.53e-07;3!UBERON:0000043;2.53e-07;3!UBERON:0007845;2.53e-07;3!UBERON:0007100;2.70e-07;25!UBERON:0002190;3.04e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.91e-17,46;UBERON:0002416,1.91e-17,46;UBERON:0001013,1.39e-15,14;UBERON:0003688,1.40e-12,6;UBERON:0002358,1.40e-12,6;UBERON:0003684,1.40e-12,6;UBERON:0001178,1.40e-12,6;UBERON:0002097,1.01e-11,41;UBERON:0004457,1.96e-10,12;UBERON:0000042,1.96e-10,12;UBERON:0002072,4.40e-10,5;UBERON:0002073,9.26e-10,5;UBERON:0005086,9.26e-10,5;UBERON:0000948,1.60e-09,24;UBERON:0005498,1.60e-09,24;UBERON:0004140,1.60e-09,24;UBERON:0009881,1.60e-09,24;UBERON:0004141,1.60e-09,24;UBERON:0003084,1.60e-09,24;UBERON:0007005,1.60e-09,24;UBERON:0004139,1.60e-09,24;UBERON:0004291,1.60e-09,24;UBERON:0007100,3.86e-08,27;UBERON:0004872,9.53e-08,83;UBERON:0003102,1.93e-07,99;UBERON:0007846,2.44e-07,3;UBERON:0000043,2.44e-07,3;UBERON:0007845,2.44e-07,3;UBERON:0002384,3.44e-07,371;UBERON:0002190,3.53e-07,3|phase1_expression=4.36028110249336,14.5588356245869,5.49722175974288,12.0087958023756,15.1966772105278,2.61701557230111,5.06599756336621,3.15859936713415,4.44015567939725,0,0,0.436882744260345,0.527533956456907,0.123766352960047,0,0,0,0,0,0.246242116153576,0.816002764977012,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,3.35350429851818,0.767175371061182,0.361439152384566,0.50133791063589,0.724232594804119,0,0.486634870302636,0.283604451492204,0.443458794925128,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,1.01304409331664,0.794455084879313,12.9076479336966,1.77334191099179,6.16745360156538,3.20246987189115,1.97334038733728,0,0,0.326923806226917,0.756787138224657,1.15235184896,0,0,0,0,0,0,0,0.408308342509787,0,0.413303124703062,1.18800285728205,0.989067717114227,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0.567160915800105,1.4351170855109,2.34913127700424,1.90738711043606,3.30100205692843,1.95799805553034,4.3798891807757,1.30281799432113,1.35021065793013,1.55899208257918,3.78650661366172,1.65689817556139,2.7479829659198,3.19508633264953,1.20902517873168,0.169560592310488,0,0,0,0,0.132529768321485,0.580969714347592,0.310983165046111,0.504641701751257,0,1.56449532329816,16.0810234548221,1.38134921352481,5.57241513638375,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,5.88034845542168,0,0,0,0,0,0,0,0,0,0.277765335475589,0.651616610620649,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.1441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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C943 | |||
|description=CAGE_peak_at_chr3:13612256..13612291,+ | |||
|id=chr3:13612256..13612291,+ | |||
|ontology_enrichment_celltype=CL:0000057!5.52e-16!75;CL:0000055!1.90e-14!180;CL:0000136!2.68e-11!15;CL:0002334!3.85e-10!12 | |||
|ontology_enrichment_celltype_v019=CL:0000136;6.98e-15;13!CL:0002334;7.45e-15;12!CL:0002620;1.23e-12;23!CL:0002559;1.01e-09;5!CL:0000057;1.75e-08;73!CL:0002615;1.12e-07;3!CL:0000135;2.53e-07;3!CL:0000388;2.53e-07;3!CL:0002521;3.04e-07;3!CL:0002579;8.89e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.69e-23,76;CL:0000136,8.66e-18,15;CL:0002334,1.25e-14,12;CL:0002620,9.01e-13,23;CL:0002559,9.26e-10,5;CL:0002615,1.13e-07,3;CL:0000135,2.44e-07,3;CL:0000388,2.44e-07,3;CL:0002521,3.53e-07,3;CL:0002320,6.57e-07,361;CL:0000134,7.10e-07,354;CL:0002494,8.13e-07,16 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.30e-09;5!DOID:450;3.30e-09;5!DOID:66;3.30e-09;5!DOID:423;3.30e-09;5!DOID:0080000;3.30e-09;5!DOID:11722;3.30e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.75e-09,5;DOID:450,1.75e-09,5;DOID:66,1.75e-09,5;DOID:423,1.75e-09,5;DOID:0080000,1.75e-09,5;DOID:11722,1.75e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0007100!3.58e-11!27;UBERON:0000948!3.90e-10!24;UBERON:0005498!3.90e-10!24;UBERON:0004140!3.90e-10!24;UBERON:0009881!3.90e-10!24;UBERON:0004141!3.90e-10!24;UBERON:0003084!3.90e-10!24;UBERON:0007005!3.90e-10!24;UBERON:0004139!3.90e-10!24;UBERON:0004291!3.90e-10!24;UBERON:0001013!1.20e-08!14;UBERON:0004872!5.21e-08!84;UBERON:0004923!8.45e-08!57;UBERON:0003102!3.09e-07!95;UBERON:0003688!9.31e-07!6;UBERON:0002358!9.31e-07!6;UBERON:0003684!9.31e-07!6;UBERON:0001178!9.31e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.27e-15;14!UBERON:0004457;1.05e-14;9!UBERON:0000042;1.05e-14;9!UBERON:0003688;8.75e-13;6!UBERON:0002358;8.75e-13;6!UBERON:0003684;8.75e-13;6!UBERON:0001178;8.75e-13;6!UBERON:0002072;2.98e-10;5!UBERON:0002199;3.65e-10;46!UBERON:0002416;3.65e-10;46!UBERON:0002073;1.01e-09;5!UBERON:0002097;5.07e-09;41!UBERON:0003102;8.76e-09;50!UBERON:0000948;1.24e-08;22!UBERON:0007846;2.53e-07;3!UBERON:0000043;2.53e-07;3!UBERON:0007845;2.53e-07;3!UBERON:0007100;2.70e-07;25!UBERON:0002190;3.04e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.91e-17,46;UBERON:0002416,1.91e-17,46;UBERON:0001013,1.39e-15,14;UBERON:0003688,1.40e-12,6;UBERON:0002358,1.40e-12,6;UBERON:0003684,1.40e-12,6;UBERON:0001178,1.40e-12,6;UBERON:0002097,1.01e-11,41;UBERON:0004457,1.96e-10,12;UBERON:0000042,1.96e-10,12;UBERON:0002072,4.40e-10,5;UBERON:0002073,9.26e-10,5;UBERON:0005086,9.26e-10,5;UBERON:0000948,1.60e-09,24;UBERON:0005498,1.60e-09,24;UBERON:0004140,1.60e-09,24;UBERON:0009881,1.60e-09,24;UBERON:0004141,1.60e-09,24;UBERON:0003084,1.60e-09,24;UBERON:0007005,1.60e-09,24;UBERON:0004139,1.60e-09,24;UBERON:0004291,1.60e-09,24;UBERON:0007100,3.86e-08,27;UBERON:0004872,9.53e-08,83;UBERON:0003102,1.93e-07,99;UBERON:0007846,2.44e-07,3;UBERON:0000043,2.44e-07,3;UBERON:0007845,2.44e-07,3;UBERON:0002384,3.44e-07,371;UBERON:0002190,3.53e-07,3 | |||
|phase1_expression=4.36028110249336,14.5588356245869,5.49722175974288,12.0087958023756,15.1966772105278,2.61701557230111,5.06599756336621,3.15859936713415,4.44015567939725,0,0,0.436882744260345,0.527533956456907,0.123766352960047,0,0,0,0,0,0.246242116153576,0.816002764977012,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,3.35350429851818,0.767175371061182,0.361439152384566,0.50133791063589,0.724232594804119,0,0.486634870302636,0.283604451492204,0.443458794925128,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,1.01304409331664,0.794455084879313,12.9076479336966,1.77334191099179,6.16745360156538,3.20246987189115,1.97334038733728,0,0,0.326923806226917,0.756787138224657,1.15235184896,0,0,0,0,0,0,0,0.408308342509787,0,0.413303124703062,1.18800285728205,0.989067717114227,0,0,0,0,0,0,0.30648779579902,0.150238058906597,0.567160915800105,1.4351170855109,2.34913127700424,1.90738711043606,3.30100205692843,1.95799805553034,4.3798891807757,1.30281799432113,1.35021065793013,1.55899208257918,3.78650661366172,1.65689817556139,2.7479829659198,3.19508633264953,1.20902517873168,0.169560592310488,0,0,0,0,0.132529768321485,0.580969714347592,0.310983165046111,0.504641701751257,0,1.56449532329816,16.0810234548221,1.38134921352481,5.57241513638375,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,5.88034845542168,0,0,0,0,0,0,0,0,0,0.277765335475589,0.651616610620649,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,1.30788020649984,0,0.387815147273333,3.57656445851882,0,0.531876233169741,0,0,0,0,0.142977993658148,1.08524321078289,0.823240336780769,0,0,0,3.61727252471503,0.871533458600294,4.79870357673874,0,0,0,0.479249710983165,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,1.45579603071565,3.21172179834891,0.630809660135739,0.585707074963566,0.601892199455438,0,4.1389228517002,0.664225598535437,0,0.781952530212746,0.979005787313703,2.40200396667599,0,0,0,0.303127571446259,1.66435439510497,1.5119514666484,3.72161711728165,0.767309866440312,7.29716245525991,8.20090555236486,1.02341449813341,3.37793234401576,17.8101679733989,1.07946785661859,2.84098760501003,0.574890092096664,1.03850885836724,1.85936605535935,0.120859449591622,0,0,0.459257792658427,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,0,0,1.6068392984416,0,0.308097234229289,0.614014698904518,0,0.322260734604821,0.435050081742686,0.0852266274161009,0,0,0,0.127612712494584,0,0.929691098594572,2.51849877464512,0,0,0,0.869932992075073,0,0.429374660225974,0,0.316379424718726,0.571890581771475,0.255897791311334,0.855877976067841,1.90921948755562,2.35484592059769,0.359744915166629,0.823611089208164,0.353437207037059,0.202182481573316,1.58510321173008,0,0,0.974853958525138,0,0,0.989838023675989,7.910568163417,1.10273068709225,2.65375590096488,0.438450885253763,0,1.31178950409327,0,0,0.281695602532241,0.286822704408103,0.0982490410131212,0,0,8.02209014131124,10.208141681757,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3441308683503,0,0,0,0,0.593929361665277,0.307160702099232,0,0,0,0,0,1.19548792950642,0.276283915531148,0,0,0,0.622079175323615,0,0,0,0.986434056369336,0,0,0.969332746095218,0,0,0,0,3.62499787717397,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0.23056390438806,0.0897576444097721,0,0,0.183195186803725,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.353830258013357,0,0,0,0,0.067401132980677,1.60515529459758,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0.661983911750998,0.313932918407225,0,0,0,0,0,0,0.873633341210151,0,0.0967563312890851,0,0,1.26085721434945,0,1.58186518546373,0,0,0,0.195551382734803,0,0.213452994739353,3.79638258206047,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28929632425987,0,2.79282401272254,0.229160424011684,1.43574604915363,0.399358000997982,0.858452096273142,0.223171457441873,0.604651252380536,0.360299883542404,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0,0,0.0524545881349981,0,0,0.191915197319445,5.00286728461357,0.662091970365432,0,0,0,0,0,0,0,0.339936274560377,0,0,0.129282956361551,0.26446520348538,0,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0.544017803369474,1.0027595760908,0.919036730290385,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,2.68658645196373,1.63599316893057,0.554805861502613,0.378806010550178,0.50313580350515,0.889811221596536,4.57680136793847,5.44431325547661,1.39893480524502,0.591420599958536,0.159296767163702,0,0,0.829412415681711,0,0.521745061811734,2.70463696194993,1.14241563650639,0,0,0.966695013382396,1.8561350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| |||
|short_description=p@chr3:13612256..13612291,+ | |||
}} |
Revision as of 21:42, 12 September 2013
Short description: | p@chr3:13612256..13612291, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:13612256..13612291, + |
Coexpression cluster: | C943_Mesenchymal_Preadipocyte_Fibroblast_Adipocyte_Synoviocyte_Hair_Mesothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.69e-23 | 76 |
fat cell | 8.66e-18 | 15 |
preadipocyte | 1.25e-14 | 12 |
skin fibroblast | 9.01e-13 | 23 |
hair follicle cell | 9.26e-10 | 5 |
adipocyte of omentum tissue | 1.13e-07 | 3 |
fibrocyte | 2.44e-07 | 3 |
tendon cell | 2.44e-07 | 3 |
subcutaneous fat cell | 3.53e-07 | 3 |
connective tissue cell | 6.57e-07 | 361 |
mesenchymal cell | 7.10e-07 | 354 |
cardiocyte | 8.13e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
integument | 1.91e-17 | 46 |
integumental system | 1.91e-17 | 46 |
adipose tissue | 1.39e-15 | 14 |
omentum | 1.40e-12 | 6 |
peritoneum | 1.40e-12 | 6 |
abdominal cavity | 1.40e-12 | 6 |
visceral peritoneum | 1.40e-12 | 6 |
skin of body | 1.01e-11 | 41 |
cavity lining | 1.96e-10 | 12 |
serous membrane | 1.96e-10 | 12 |
hypodermis | 4.40e-10 | 5 |
hair follicle | 9.26e-10 | 5 |
hair follicle placode | 9.26e-10 | 5 |
heart | 1.60e-09 | 24 |
primitive heart tube | 1.60e-09 | 24 |
primary heart field | 1.60e-09 | 24 |
anterior lateral plate mesoderm | 1.60e-09 | 24 |
heart tube | 1.60e-09 | 24 |
heart primordium | 1.60e-09 | 24 |
cardiac mesoderm | 1.60e-09 | 24 |
cardiogenic plate | 1.60e-09 | 24 |
heart rudiment | 1.60e-09 | 24 |
primary circulatory organ | 3.86e-08 | 27 |
splanchnic layer of lateral plate mesoderm | 9.53e-08 | 83 |
surface structure | 1.93e-07 | 99 |
dense regular connective tissue | 2.44e-07 | 3 |
tendon | 2.44e-07 | 3 |
regular connective tissue | 2.44e-07 | 3 |
connective tissue | 3.44e-07 | 371 |
subcutaneous adipose tissue | 3.53e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.75e-09 | 5 |
myotonic disease | 1.75e-09 | 5 |
muscle tissue disease | 1.75e-09 | 5 |
myopathy | 1.75e-09 | 5 |
muscular disease | 1.75e-09 | 5 |
myotonic dystrophy | 1.75e-09 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.