FFCP PHASE1:Hg19::chr3:112359611..112359633,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=151887|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30649|TSSclassifier=N|UniProt=|association_with_transcript=269bp_to_ENST00000475181_5end|coexpression_cluster_id=C333|description=CAGE_peak_18_at_CCDC80_5end|id=chr3:112359611..112359633,-|ontology_enrichment_celltype=CL:0000055!2.76e-25!180;CL:0000057!7.77e-15!75;CL:0000680!1.62e-13!57;CL:0000056!1.62e-13!57;CL:0000355!1.62e-13!57;CL:0000187!3.47e-12!54;CL:0000183!2.31e-10!59;CL:0000393!2.17e-09!60;CL:0000211!2.17e-09!60;CL:0000192!2.49e-09!42;CL:0000514!2.49e-09!42;CL:0002334!6.58e-08!12;CL:0000359!1.95e-07!32;CL:0000222!5.54e-07!119;CL:0000136!6.09e-07!15|ontology_enrichment_celltype_v019=CL:0002334;3.30e-08;12!CL:0000134;2.78e-07;55!CL:0000136;3.15e-07;13!CL:1000306;9.84e-07;4!CL:0002547;9.84e-07;4|ontology_enrichment_celltype_v019_2=CL:0000057,5.20e-12,76;CL:0000136,6.48e-09,15;CL:0002334,3.33e-08,12;CL:0000048,5.70e-08,427;CL:0000723,1.68e-07,433;CL:0000034,6.60e-07,441;CL:1000306,9.88e-07,4;CL:0002547,9.88e-07,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;8.85e-07;5!DOID:450;8.85e-07;5!DOID:66;8.85e-07;5!DOID:423;8.85e-07;5!DOID:0080000;8.85e-07;5!DOID:11722;8.85e-07;5|ontology_enrichment_disease_v019_2=DOID:17,9.89e-07,5;DOID:450,9.89e-07,5;DOID:66,9.89e-07,5;DOID:423,9.89e-07,5;DOID:0080000,9.89e-07,5;DOID:11722,9.89e-07,5|ontology_enrichment_uberon=UBERON:0000914!3.20e-13!83;UBERON:0002329!3.20e-13!83;UBERON:0003077!3.20e-13!83;UBERON:0003059!3.20e-13!83;UBERON:0007282!3.20e-13!83;UBERON:0009618!3.20e-13!83;UBERON:0007285!3.20e-13!83;UBERON:0002385!3.41e-13!63;UBERON:0001015!3.41e-13!63;UBERON:0000383!3.41e-13!63;UBERON:0001134!3.42e-13!61;UBERON:0002036!3.42e-13!61;UBERON:0003082!3.42e-13!61;UBERON:0004290!4.82e-12!70;UBERON:0004872!7.45e-11!84;UBERON:0000486!1.20e-10!82;UBERON:0004923!2.99e-09!57;UBERON:0000948!2.21e-08!24;UBERON:0005498!2.21e-08!24;UBERON:0004140!2.21e-08!24;UBERON:0009881!2.21e-08!24;UBERON:0004141!2.21e-08!24;UBERON:0003084!2.21e-08!24;UBERON:0007005!2.21e-08!24;UBERON:0004139!2.21e-08!24;UBERON:0004291!2.21e-08!24;UBERON:0005256!3.28e-08!143;UBERON:0007100!5.34e-08!27;UBERON:0000475!1.06e-07!365|ontology_enrichment_uberon_v019=UBERON:0004457;1.37e-10;9!UBERON:0000042;1.37e-10;9!UBERON:0003688;9.78e-10;6!UBERON:0002358;9.78e-10;6!UBERON:0003684;9.78e-10;6!UBERON:0001178;9.78e-10;6!UBERON:0000948;1.76e-08;22!UBERON:0007100;5.27e-07;25!UBERON:0004797;9.84e-07;4!UBERON:0000415;9.84e-07;4!UBERON:0007240;9.84e-07;4!UBERON:0005742;9.84e-07;4!UBERON:0005734;9.84e-07;4!UBERON:0004664;9.84e-07;4!UBERON:0004663;9.84e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004872,1.19e-10,83;UBERON:0003688,1.02e-09,6;UBERON:0002358,1.02e-09,6;UBERON:0003684,1.02e-09,6;UBERON:0001178,1.02e-09,6;UBERON:0004797,3.50e-09,7;UBERON:0000948,1.23e-08,24;UBERON:0005498,1.23e-08,24;UBERON:0004140,1.23e-08,24;UBERON:0009881,1.23e-08,24;UBERON:0004141,1.23e-08,24;UBERON:0003084,1.23e-08,24;UBERON:0007005,1.23e-08,24;UBERON:0004139,1.23e-08,24;UBERON:0004291,1.23e-08,24;UBERON:0004923,1.19e-07,66;UBERON:0004457,2.32e-07,12;UBERON:0000042,2.32e-07,12;UBERON:0007100,3.23e-07,27;UBERON:0002199,7.42e-07,46;UBERON:0002416,7.42e-07,46;UBERON:0002385,9.62e-07,64;UBERON:0001015,9.62e-07,64;UBERON:0000383,9.62e-07,64;UBERON:0000415,9.88e-07,4;UBERON:0007240,9.88e-07,4;UBERON:0005742,9.88e-07,4;UBERON:0005734,9.88e-07,4;UBERON:0004664,9.88e-07,4;UBERON:0004663,9.88e-07,4|phase1_expression=3.63356758541113,14.5588356245869,9.02108186214215,9.00659685178174,10.2801051718276,7.85104671690332,0,0.631719873426831,2.35067065379855,0,0,1.52908960491121,0.263766978228454,0.37129905888014,2.65117900582333,0,0,2.92124036154949,0.975865597581014,0.246242116153576,0.816002764977012,0,0.286235987131057,0.273748850145768,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,2.68280343881454,3.32442660793179,0.361439152384566,5.0133791063589,5.93870727739377,0,2.91980922181582,0.472674085820339,1.77383517970051,0.614843499851882,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0.357198913136319,0.22452937262617,0,1.53316637465883,0,0,0,0,0,8.94549513051573,7.09130865321647,4.76673050927588,18.9312169694217,6.02936249737207,11.2135520028461,0,3.94668077467456,3.42332138939743,0.269421344139376,0.653847612453835,0.302714855289863,0.576175924479999,0.234321431833797,0,0,0.149448680551801,0.469737994575059,0,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0.741800787835671,0,0.718618141816238,0.168336113954066,0,0.277064115484183,0.438977620880838,1.83892677479412,0.901428353439581,0.680593098960126,5.38168907066586,5.12537733164562,4.4505699243508,2.70081986475962,1.23663035086127,3.60696756063881,2.047285419647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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=151887 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30649 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=269bp_to_ENST00000475181_5end | |||
|coexpression_cluster_id=C333 | |||
|description=CAGE_peak_18_at_CCDC80_5end | |||
|id=chr3:112359611..112359633,- | |||
|ontology_enrichment_celltype=CL:0000055!2.76e-25!180;CL:0000057!7.77e-15!75;CL:0000680!1.62e-13!57;CL:0000056!1.62e-13!57;CL:0000355!1.62e-13!57;CL:0000187!3.47e-12!54;CL:0000183!2.31e-10!59;CL:0000393!2.17e-09!60;CL:0000211!2.17e-09!60;CL:0000192!2.49e-09!42;CL:0000514!2.49e-09!42;CL:0002334!6.58e-08!12;CL:0000359!1.95e-07!32;CL:0000222!5.54e-07!119;CL:0000136!6.09e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.30e-08;12!CL:0000134;2.78e-07;55!CL:0000136;3.15e-07;13!CL:1000306;9.84e-07;4!CL:0002547;9.84e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.20e-12,76;CL:0000136,6.48e-09,15;CL:0002334,3.33e-08,12;CL:0000048,5.70e-08,427;CL:0000723,1.68e-07,433;CL:0000034,6.60e-07,441;CL:1000306,9.88e-07,4;CL:0002547,9.88e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;8.85e-07;5!DOID:450;8.85e-07;5!DOID:66;8.85e-07;5!DOID:423;8.85e-07;5!DOID:0080000;8.85e-07;5!DOID:11722;8.85e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.89e-07,5;DOID:450,9.89e-07,5;DOID:66,9.89e-07,5;DOID:423,9.89e-07,5;DOID:0080000,9.89e-07,5;DOID:11722,9.89e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.20e-13!83;UBERON:0002329!3.20e-13!83;UBERON:0003077!3.20e-13!83;UBERON:0003059!3.20e-13!83;UBERON:0007282!3.20e-13!83;UBERON:0009618!3.20e-13!83;UBERON:0007285!3.20e-13!83;UBERON:0002385!3.41e-13!63;UBERON:0001015!3.41e-13!63;UBERON:0000383!3.41e-13!63;UBERON:0001134!3.42e-13!61;UBERON:0002036!3.42e-13!61;UBERON:0003082!3.42e-13!61;UBERON:0004290!4.82e-12!70;UBERON:0004872!7.45e-11!84;UBERON:0000486!1.20e-10!82;UBERON:0004923!2.99e-09!57;UBERON:0000948!2.21e-08!24;UBERON:0005498!2.21e-08!24;UBERON:0004140!2.21e-08!24;UBERON:0009881!2.21e-08!24;UBERON:0004141!2.21e-08!24;UBERON:0003084!2.21e-08!24;UBERON:0007005!2.21e-08!24;UBERON:0004139!2.21e-08!24;UBERON:0004291!2.21e-08!24;UBERON:0005256!3.28e-08!143;UBERON:0007100!5.34e-08!27;UBERON:0000475!1.06e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.37e-10;9!UBERON:0000042;1.37e-10;9!UBERON:0003688;9.78e-10;6!UBERON:0002358;9.78e-10;6!UBERON:0003684;9.78e-10;6!UBERON:0001178;9.78e-10;6!UBERON:0000948;1.76e-08;22!UBERON:0007100;5.27e-07;25!UBERON:0004797;9.84e-07;4!UBERON:0000415;9.84e-07;4!UBERON:0007240;9.84e-07;4!UBERON:0005742;9.84e-07;4!UBERON:0005734;9.84e-07;4!UBERON:0004664;9.84e-07;4!UBERON:0004663;9.84e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,1.19e-10,83;UBERON:0003688,1.02e-09,6;UBERON:0002358,1.02e-09,6;UBERON:0003684,1.02e-09,6;UBERON:0001178,1.02e-09,6;UBERON:0004797,3.50e-09,7;UBERON:0000948,1.23e-08,24;UBERON:0005498,1.23e-08,24;UBERON:0004140,1.23e-08,24;UBERON:0009881,1.23e-08,24;UBERON:0004141,1.23e-08,24;UBERON:0003084,1.23e-08,24;UBERON:0007005,1.23e-08,24;UBERON:0004139,1.23e-08,24;UBERON:0004291,1.23e-08,24;UBERON:0004923,1.19e-07,66;UBERON:0004457,2.32e-07,12;UBERON:0000042,2.32e-07,12;UBERON:0007100,3.23e-07,27;UBERON:0002199,7.42e-07,46;UBERON:0002416,7.42e-07,46;UBERON:0002385,9.62e-07,64;UBERON:0001015,9.62e-07,64;UBERON:0000383,9.62e-07,64;UBERON:0000415,9.88e-07,4;UBERON:0007240,9.88e-07,4;UBERON:0005742,9.88e-07,4;UBERON:0005734,9.88e-07,4;UBERON:0004664,9.88e-07,4;UBERON:0004663,9.88e-07,4 | |||
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| |||
|short_description=p18@CCDC80 | |||
}} |
Revision as of 20:48, 12 September 2013
Short description: | p18@CCDC80 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_18_at_CCDC80_5end |
Coexpression cluster: | C333_Fibroblast_Smooth_Preadipocyte_Adipocyte_Ewing_Placental_sacrococcigeal |
Association with transcript: | 269bp_to_ENST00000475181_5end |
EntrezGene: | CCDC80 |
HGNC: | 30649 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.20e-12 | 76 |
fat cell | 6.48e-09 | 15 |
preadipocyte | 3.33e-08 | 12 |
multi fate stem cell | 5.70e-08 | 427 |
somatic stem cell | 1.68e-07 | 433 |
stem cell | 6.60e-07 | 441 |
fibroblast of tunica adventitia of artery | 9.88e-07 | 4 |
fibroblast of the aortic adventitia | 9.88e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 1.19e-10 | 83 |
omentum | 1.02e-09 | 6 |
peritoneum | 1.02e-09 | 6 |
abdominal cavity | 1.02e-09 | 6 |
visceral peritoneum | 1.02e-09 | 6 |
blood vessel layer | 3.50e-09 | 7 |
heart | 1.23e-08 | 24 |
primitive heart tube | 1.23e-08 | 24 |
primary heart field | 1.23e-08 | 24 |
anterior lateral plate mesoderm | 1.23e-08 | 24 |
heart tube | 1.23e-08 | 24 |
heart primordium | 1.23e-08 | 24 |
cardiac mesoderm | 1.23e-08 | 24 |
cardiogenic plate | 1.23e-08 | 24 |
heart rudiment | 1.23e-08 | 24 |
organ component layer | 1.19e-07 | 66 |
cavity lining | 2.32e-07 | 12 |
serous membrane | 2.32e-07 | 12 |
primary circulatory organ | 3.23e-07 | 27 |
integument | 7.42e-07 | 46 |
integumental system | 7.42e-07 | 46 |
muscle tissue | 9.62e-07 | 64 |
musculature | 9.62e-07 | 64 |
musculature of body | 9.62e-07 | 64 |
artery wall | 9.88e-07 | 4 |
tunica adventitia of artery | 9.88e-07 | 4 |
adventitia | 9.88e-07 | 4 |
tunica adventitia of blood vessel | 9.88e-07 | 4 |
aorta tunica adventitia | 9.88e-07 | 4 |
aorta wall | 9.88e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.89e-07 | 5 |
myotonic disease | 9.89e-07 | 5 |
muscle tissue disease | 9.89e-07 | 5 |
myopathy | 9.89e-07 | 5 |
muscular disease | 9.89e-07 | 5 |
myotonic dystrophy | 9.89e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.