FFCP PHASE1:Hg19::chr3:111578076..111578080,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=90102|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29573|TSSclassifier=S|UniProt=Q86SQ0|association_with_transcript=49bp_to_ENST00000412622,ENST00000431670,NM_001134438,NM_145753,uc003dyd.2,uc010hqa.2_5end|description=CAGE_peak_8_at_PHLDB2_5end|id=chr3:111578076..111578080,+|ontology_enrichment_celltype=CL:0000066!3.55e-12!254|ontology_enrichment_celltype_v019=CL:1000415;8.79e-10;2|ontology_enrichment_celltype_v019_2=CL:1000415,8.85e-10,2;CL:0000066,9.79e-10,253;CL:0000240,9.65e-07,6;CL:0000311,9.65e-07,6;CL:0000079,9.65e-07,6;CL:0000237,9.65e-07,6;CL:0000036,9.65e-07,6;CL:0000357,9.65e-07,6;CL:0000114,9.65e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!6.52e-12!143;DOID:305!1.47e-11!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,2.20e-10,106;DOID:0050687,1.79e-07,143|ontology_enrichment_uberon=UBERON:0004119!5.13e-14!169;UBERON:0000925!5.13e-14!169;UBERON:0006595!5.13e-14!169;UBERON:0001007!4.27e-12!155;UBERON:0001555!4.27e-12!155;UBERON:0007026!4.27e-12!155;UBERON:0000077!3.24e-10!130;UBERON:0004921!1.30e-09!129;UBERON:0004185!1.30e-09!129;UBERON:0000161!3.81e-08!35;UBERON:0003929!1.24e-07!54;UBERON:0005631!4.32e-07!14;UBERON:0000158!4.32e-07!14;UBERON:0005911!8.65e-07!82|ontology_enrichment_uberon_v019=UBERON:0002294;5.72e-10;7!UBERON:0001173;5.72e-10;7!UBERON:0002110;8.94e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.20e-10,14;UBERON:0000158,2.20e-10,14;UBERON:0002294,7.61e-08,9;UBERON:0001173,7.61e-08,9;UBERON:0004912,7.61e-08,9;UBERON:0002110,8.98e-07,3;UBERON:0006242,8.98e-07,3|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,0,0,0,0,0,0,1.31064823278103,0.263766978228454,0.247532705920093,0,0.672325146451775,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.417989933073621,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,1.58891016975863,0,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,1.36373060295417,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0.709840800239063,0.168584690078102,0.241011029883482,0.441175890929576,1.08939722046203,1.18635309555548,0.539325232640658,0.98110732562673,0,0,0,0,0,0,0,0,0,0.122988438543114,0,1.09750285408626,0,2.51322431029077,1.574003567695,0,0,1.44331342025273,0,0,0.288732895522148,0,0,0,0,0,0,0,0,0.503946384596579,0.425325291727159,1.07470227243418,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.857867961948885,0,0,0,0.355391948742546,0.791951872933429,2.41151501647669,0,0.799783929456456,0,0,0,0,0,0,0,0,0.179060963239896,0,0.197030760201927,0.646882724578552,0.128343036279748,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0.623912584592421,0.356857977594324,0.315404830067869,0.702848489956279,0,0,0,0,0,0.173767228936166,0,0,0,0,0.106727557803444,0,3.32870879020994,0.604780586659361,0,0.306923946576125,0,0.128139149255701,0,0.321707842287215,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.184161977871793,0.803701137152247,0,0.393373244878272,0,0.462092022626489,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47298427954533,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0.429680979473094,0.145016693914229,0.170453254832202,0,0,0.192190067365106,0.893288987462089,0.2023155617111,0,0.31481234683064,0,0,0.532306030317022,0,0.37064843820784,0.286249773483982,0,0,0,0,0,0,0,0,0.54907405947211,0.353437207037059,0,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0.202910376962704,0,0,0,0.785992328104969,1.426684205925,0,0,0,0.379473173765715,0,0.48111056362756,0,0,2.44773882019626,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,1.48482340416319,0.307160702099232,0,0,0.556543525114529,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0.359473404589307,1.79021174675609,0,0.493217028184668,0,0,0,0.0927680981618513,0,0.520855522170466,0.174919999992391,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0.544692317594951,1.11538995422883,0,2.27884111694002,0,0.807818799687949,0.325942115766024,2.55200927785536,0.824378340616761,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,0.489698424477443,0,0.216388639742091,0,0.0884575645033392,0,0,0,0.208843899010911,0,0.802577647298789,0,0,0.586993856796269,0,0,0,0,1.13735843331278,0,0,0,0.66198391175099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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=90102 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29573 | |||
|TSSclassifier=S | |||
|UniProt=Q86SQ0 | |||
|association_with_transcript=49bp_to_ENST00000412622,ENST00000431670,NM_001134438,NM_145753,uc003dyd.2,uc010hqa.2_5end | |||
|description=CAGE_peak_8_at_PHLDB2_5end | |||
|id=chr3:111578076..111578080,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.55e-12!254 | |||
|ontology_enrichment_celltype_v019=CL:1000415;8.79e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,8.85e-10,2;CL:0000066,9.79e-10,253;CL:0000240,9.65e-07,6;CL:0000311,9.65e-07,6;CL:0000079,9.65e-07,6;CL:0000237,9.65e-07,6;CL:0000036,9.65e-07,6;CL:0000357,9.65e-07,6;CL:0000114,9.65e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!6.52e-12!143;DOID:305!1.47e-11!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.20e-10,106;DOID:0050687,1.79e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.13e-14!169;UBERON:0000925!5.13e-14!169;UBERON:0006595!5.13e-14!169;UBERON:0001007!4.27e-12!155;UBERON:0001555!4.27e-12!155;UBERON:0007026!4.27e-12!155;UBERON:0000077!3.24e-10!130;UBERON:0004921!1.30e-09!129;UBERON:0004185!1.30e-09!129;UBERON:0000161!3.81e-08!35;UBERON:0003929!1.24e-07!54;UBERON:0005631!4.32e-07!14;UBERON:0000158!4.32e-07!14;UBERON:0005911!8.65e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;5.72e-10;7!UBERON:0001173;5.72e-10;7!UBERON:0002110;8.94e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.20e-10,14;UBERON:0000158,2.20e-10,14;UBERON:0002294,7.61e-08,9;UBERON:0001173,7.61e-08,9;UBERON:0004912,7.61e-08,9;UBERON:0002110,8.98e-07,3;UBERON:0006242,8.98e-07,3 | |||
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| |||
|short_description=p8@PHLDB2 | |||
}} |
Revision as of 20:43, 12 September 2013
Short description: | p8@PHLDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_PHLDB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 49bp_to_ENST00000412622, ENST00000431670, NM_001134438, NM_145753, uc003dyd.2, uc010hqa.2_5end |
EntrezGene: | PHLDB2 |
HGNC: | 29573 |
UniProt: | Q86SQ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 8.85e-10 | 2 |
epithelial cell | 9.79e-10 | 253 |
stratified squamous epithelial cell | 9.65e-07 | 6 |
keratin accumulating cell | 9.65e-07 | 6 |
stratified epithelial cell | 9.65e-07 | 6 |
keratinizing barrier epithelial cell | 9.65e-07 | 6 |
epithelial fate stem cell | 9.65e-07 | 6 |
stratified epithelial stem cell | 9.65e-07 | 6 |
surface ectodermal cell | 9.65e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.20e-10 | 14 |
membranous layer | 2.20e-10 | 14 |
biliary system | 7.61e-08 | 9 |
biliary tree | 7.61e-08 | 9 |
biliary bud | 7.61e-08 | 9 |
gallbladder | 8.98e-07 | 3 |
gall bladder primordium | 8.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.20e-10 | 106 |
cell type cancer | 1.79e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.