FFCP PHASE1:Mm9::chr11:118771404..118771416,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2642|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:118771404..118771416,-|id=chr11:118771404..118771416,-|ontology_enrichment_celltype=CL:0000117!7.57e-15!23;CL:0000337!7.57e-15!23;CL:0000540!1.37e-10!33;CL:0000047!1.37e-10!33;CL:0000031!1.37e-10!33;CL:0000404!1.37e-10!33;CL:0000393!6.42e-08!39;CL:0000211!6.42e-08!39|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!4.35e-20!34;UBERON:0001049!1.54e-18!52;UBERON:0005068!1.54e-18!52;UBERON:0006241!1.54e-18!52;UBERON:0007135!1.54e-18!52;UBERON:0001017!5.96e-18!73;UBERON:0005743!5.96e-18!73;UBERON:0000073!4.41e-17!75;UBERON:0001016!4.41e-17!75;UBERON:0002346!1.08e-15!71;UBERON:0003075!1.08e-15!71;UBERON:0007284!1.08e-15!71;UBERON:0000955!2.83e-15!50;UBERON:0006238!2.83e-15!50;UBERON:0002791!3.97e-15!29;UBERON:0003528!3.97e-15!29;UBERON:0001893!3.97e-15!29;UBERON:0002616!2.15e-14!49;UBERON:0000033!1.81e-13!63;UBERON:0004121!5.78e-13!102;UBERON:0000924!5.78e-13!102;UBERON:0006601!5.78e-13!102;UBERON:0003080!9.63e-13!40;UBERON:0003056!1.44e-12!49;UBERON:0000956!2.47e-12!21;UBERON:0001869!2.47e-12!21;UBERON:0000203!2.47e-12!21;UBERON:0002780!2.50e-12!39;UBERON:0001890!2.50e-12!39;UBERON:0006240!2.50e-12!39;UBERON:0002021!3.26e-09!10;UBERON:0000411!3.26e-09!10;UBERON:0001950!3.26e-09!10;UBERON:0002619!3.67e-09!17;UBERON:0002240!5.79e-07!6;UBERON:0005174!5.79e-07!6;UBERON:0001137!5.79e-07!6;UBERON:0007811!5.93e-07!86;UBERON:0003076!9.12e-07!12;UBERON:0003057!9.12e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0002021,5.04e-13,10;UBERON:0000411,5.04e-13,10;UBERON:0001950,5.04e-13,10;UBERON:0000162,7.41e-12,3;UBERON:0001353,7.41e-12,3;UBERON:0000163,7.41e-12,3;UBERON:0006866,7.41e-12,3;UBERON:0001046,7.41e-12,3;UBERON:0000164,7.41e-12,3;UBERON:0000931,7.41e-12,3;UBERON:0001255,9.82e-10,1;UBERON:0001556,9.82e-10,1;UBERON:0002367,3.04e-09,1;UBERON:0009846,3.04e-09,1;UBERON:0003353,3.04e-09,1;UBERON:0004902,3.04e-09,1;UBERON:0003820,3.04e-09,1;UBERON:0009847,3.04e-09,1;UBERON:0002037,3.05e-09,4;UBERON:0002680,3.05e-09,4;UBERON:0001895,3.05e-09,4;UBERON:0010092,3.05e-09,4;UBERON:0006215,3.05e-09,4;UBERON:0001851,4.39e-09,1;UBERON:0005889,4.39e-09,1;UBERON:0002619,8.78e-08,17;UBERON:0000161,1.80e-07,5;UBERON:0004122,1.80e-07,5;UBERON:0001049,3.27e-07,52;UBERON:0005068,3.27e-07,52;UBERON:0006241,3.27e-07,52;UBERON:0007135,3.27e-07,52;UBERON:0000073,6.30e-07,54;UBERON:0003076,9.73e-07,12;UBERON:0003057,9.73e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,1.26766280701236,0,0,0,0,0,0,0,0.622137673850866,0.540023753326763,0.210324961351382,0.571301968807607,0.883474163806454,0.367472397644862,0.383381884072945,0,0,0.255374676170375,0.46081959976873,0.527545150920775,0.640413505216868,0.52091337055676,0,0.56276261003168,0.15279824777681,2.06240009831567,0.711858403995515,0.745597783301202,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,3.51336956413857,4.60782754989601,0,0,0,0,0.149790639404823,0,0.251308704225729,0.695297280769106,1.27857728665165,0,0.324482526135515,0,0.373220911830279,0,0,0,0,0.540186389416048,0.30140963567143,0.204109497453984,0,0.187403449119458,0,0.215567992932842,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.205809224758569,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35163505977661,0,0,0,0,0.430846795465598,0,0,0,0,0,0.395287777946524,0.963963949265421,0,0,0,0.164970122972535,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0,0,0.388076051348264,0,0,0,0.164549020602121,0,0,0,1.98475558249466,0,0.161464426695906,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.627264888043406,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18206700903009,0,0,0,0.501572104035363,2.25900737046827,1.84130094602871,2.29158205375759,0.515559547031063,0.685082519770642,0,0.675022500231806,0.45032120322422,0.906284817968409,1.03552062350364,0.31136204275253,0.399024873401031,0.512200817262403,0.243106717068294,0.209613162627982,0.183843508450014,0.44449345560323,0.412070114477788,0,0.252697211763798,0,0,0.0936415074698824,0.256100609619477,0.114870937911227,0.476293691283074,0.463537303779422,0.192909220463705,0.824171801606613,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.282328141245992,0.169229215783353,0,0.526139422875686,0.543216455383447,0,0.593175090620871,0.29551344712669,0,0,0.192906610981141,0.499621155875892,0.233931608445408,0.429742108096597,0,0,0|short_description=p@chr11:118771404..118771416,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2642 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:118771404..118771416,- | |||
|id=chr11:118771404..118771416,- | |||
|ontology_enrichment_celltype=CL:0000117!7.57e-15!23;CL:0000337!7.57e-15!23;CL:0000540!1.37e-10!33;CL:0000047!1.37e-10!33;CL:0000031!1.37e-10!33;CL:0000404!1.37e-10!33;CL:0000393!6.42e-08!39;CL:0000211!6.42e-08!39 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!4.35e-20!34;UBERON:0001049!1.54e-18!52;UBERON:0005068!1.54e-18!52;UBERON:0006241!1.54e-18!52;UBERON:0007135!1.54e-18!52;UBERON:0001017!5.96e-18!73;UBERON:0005743!5.96e-18!73;UBERON:0000073!4.41e-17!75;UBERON:0001016!4.41e-17!75;UBERON:0002346!1.08e-15!71;UBERON:0003075!1.08e-15!71;UBERON:0007284!1.08e-15!71;UBERON:0000955!2.83e-15!50;UBERON:0006238!2.83e-15!50;UBERON:0002791!3.97e-15!29;UBERON:0003528!3.97e-15!29;UBERON:0001893!3.97e-15!29;UBERON:0002616!2.15e-14!49;UBERON:0000033!1.81e-13!63;UBERON:0004121!5.78e-13!102;UBERON:0000924!5.78e-13!102;UBERON:0006601!5.78e-13!102;UBERON:0003080!9.63e-13!40;UBERON:0003056!1.44e-12!49;UBERON:0000956!2.47e-12!21;UBERON:0001869!2.47e-12!21;UBERON:0000203!2.47e-12!21;UBERON:0002780!2.50e-12!39;UBERON:0001890!2.50e-12!39;UBERON:0006240!2.50e-12!39;UBERON:0002021!3.26e-09!10;UBERON:0000411!3.26e-09!10;UBERON:0001950!3.26e-09!10;UBERON:0002619!3.67e-09!17;UBERON:0002240!5.79e-07!6;UBERON:0005174!5.79e-07!6;UBERON:0001137!5.79e-07!6;UBERON:0007811!5.93e-07!86;UBERON:0003076!9.12e-07!12;UBERON:0003057!9.12e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,5.04e-13,10;UBERON:0000411,5.04e-13,10;UBERON:0001950,5.04e-13,10;UBERON:0000162,7.41e-12,3;UBERON:0001353,7.41e-12,3;UBERON:0000163,7.41e-12,3;UBERON:0006866,7.41e-12,3;UBERON:0001046,7.41e-12,3;UBERON:0000164,7.41e-12,3;UBERON:0000931,7.41e-12,3;UBERON:0001255,9.82e-10,1;UBERON:0001556,9.82e-10,1;UBERON:0002367,3.04e-09,1;UBERON:0009846,3.04e-09,1;UBERON:0003353,3.04e-09,1;UBERON:0004902,3.04e-09,1;UBERON:0003820,3.04e-09,1;UBERON:0009847,3.04e-09,1;UBERON:0002037,3.05e-09,4;UBERON:0002680,3.05e-09,4;UBERON:0001895,3.05e-09,4;UBERON:0010092,3.05e-09,4;UBERON:0006215,3.05e-09,4;UBERON:0001851,4.39e-09,1;UBERON:0005889,4.39e-09,1;UBERON:0002619,8.78e-08,17;UBERON:0000161,1.80e-07,5;UBERON:0004122,1.80e-07,5;UBERON:0001049,3.27e-07,52;UBERON:0005068,3.27e-07,52;UBERON:0006241,3.27e-07,52;UBERON:0007135,3.27e-07,52;UBERON:0000073,6.30e-07,54;UBERON:0003076,9.73e-07,12;UBERON:0003057,9.73e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,1.26766280701236,0,0,0,0,0,0,0,0.622137673850866,0.540023753326763,0.210324961351382,0.571301968807607,0.883474163806454,0.367472397644862,0.383381884072945,0,0,0.255374676170375,0.46081959976873,0.527545150920775,0.640413505216868,0.52091337055676,0,0.56276261003168,0.15279824777681,2.06240009831567,0.711858403995515,0.745597783301202,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,3.51336956413857,4.60782754989601,0,0,0,0,0.149790639404823,0,0.251308704225729,0.695297280769106,1.27857728665165,0,0.324482526135515,0,0.373220911830279,0,0,0,0,0.540186389416048,0.30140963567143,0.204109497453984,0,0.187403449119458,0,0.215567992932842,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,0.205809224758569,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35163505977661,0,0,0,0,0.430846795465598,0,0,0,0,0,0.395287777946524,0.963963949265421,0,0,0,0.164970122972535,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0,0,0.388076051348264,0,0,0,0.164549020602121,0,0,0,1.98475558249466,0,0.161464426695906,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.627264888043406,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18206700903009,0,0,0,0.501572104035363,2.25900737046827,1.84130094602871,2.29158205375759,0.515559547031063,0.685082519770642,0,0.675022500231806,0.45032120322422,0.906284817968409,1.03552062350364,0.31136204275253,0.399024873401031,0.512200817262403,0.243106717068294,0.209613162627982,0.183843508450014,0.44449345560323,0.412070114477788,0,0.252697211763798,0,0,0.0936415074698824,0.256100609619477,0.114870937911227,0.476293691283074,0.463537303779422,0.192909220463705,0.824171801606613,0.147198920134397,0,0.177475806159338,0.238436189947321,0.145346416632329,0.282328141245992,0.169229215783353,0,0.526139422875686,0.543216455383447,0,0.593175090620871,0.29551344712669,0,0,0.192906610981141,0.499621155875892,0.233931608445408,0.429742108096597,0,0,0 | |||
|short_description=p@chr11:118771404..118771416,- | |||
}} |
Revision as of 19:01, 12 September 2013
Short description: | p@chr11:118771404..118771416, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:118771404..118771416, - |
Coexpression cluster: | MCL_coexpression_mm9:2642 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 5.04e-13 | 10 |
visual cortex | 5.04e-13 | 10 |
neocortex | 5.04e-13 | 10 |
cloaca | 7.41e-12 | 3 |
anal region | 7.41e-12 | 3 |
embryonic cloaca | 7.41e-12 | 3 |
terminal part of digestive tract | 7.41e-12 | 3 |
hindgut | 7.41e-12 | 3 |
primitive urogenital sinus | 7.41e-12 | 3 |
proctodeum | 7.41e-12 | 3 |
urinary bladder | 9.82e-10 | 1 |
lower urinary tract | 9.82e-10 | 1 |
prostate gland | 3.04e-09 | 1 |
embryonic cloacal epithelium | 3.04e-09 | 1 |
epithelium of hindgut | 3.04e-09 | 1 |
urogenital sinus epithelium | 3.04e-09 | 1 |
prostate bud | 3.04e-09 | 1 |
prostate field | 3.04e-09 | 1 |
cerebellum | 3.05e-09 | 4 |
regional part of metencephalon | 3.05e-09 | 4 |
metencephalon | 3.05e-09 | 4 |
future metencephalon | 3.05e-09 | 4 |
rhombic lip | 3.05e-09 | 4 |
cortex | 4.39e-09 | 1 |
zygote cortex | 4.39e-09 | 1 |
regional part of cerebral cortex | 8.78e-08 | 17 |
orifice | 1.80e-07 | 5 |
genitourinary system | 1.80e-07 | 5 |
neural tube | 3.27e-07 | 52 |
neural rod | 3.27e-07 | 52 |
future spinal cord | 3.27e-07 | 52 |
neural keel | 3.27e-07 | 52 |
regional part of nervous system | 6.30e-07 | 54 |
posterior neural tube | 9.73e-07 | 12 |
chordal neural plate | 9.73e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.