FFCP PHASE1:Hg19::chr2:30455016..30455055,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=81606|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29532|TSSclassifier=S|UniProt=B5MCP4,B5MBX5|association_with_transcript=0bp_to_ENST00000401506,ENST00000407930,ENST00000467242_5end|description=CAGE_peak_6_at_LBH_5end|id=chr2:30455016..30455055,+|ontology_enrichment_celltype=CL:0000542!1.01e-26!53;CL:0000051!1.01e-26!53;CL:0000838!1.10e-26!52;CL:0000791!4.85e-15!18;CL:0000789!4.85e-15!18;CL:0002420!4.85e-15!18;CL:0002419!4.85e-15!18;CL:0000790!4.85e-15!18;CL:0000084!6.55e-15!25;CL:0000827!6.55e-15!25;CL:0000236!8.52e-12!14;CL:0000945!5.20e-11!24;CL:0000826!5.20e-11!24;CL:0000625!3.16e-10!11|ontology_enrichment_celltype_v019=CL:0000791;1.42e-30;18!CL:0000789;1.42e-30;18!CL:0002419;1.42e-30;18!CL:0000084;3.25e-29;25!CL:0000542;1.18e-25;53!CL:0000236;2.50e-24;13!CL:0000625;1.53e-20;11!CL:0000624;8.98e-14;6!CL:0000945;9.63e-12;24!CL:0002322;1.17e-11;5!CL:0000540;6.78e-09;6!CL:0000404;6.78e-09;6!CL:0000898;1.22e-07;3!CL:0002615;6.91e-07;3!CL:0000623;6.91e-07;3|ontology_enrichment_celltype_v019_2=CL:0000838,3.44e-43,52;CL:0000542,3.56e-42,53;CL:0000051,3.56e-42,53;CL:0000791,9.20e-31,18;CL:0000789,9.20e-31,18;CL:0002420,9.20e-31,18;CL:0002419,9.20e-31,18;CL:0000790,9.20e-31,18;CL:0000084,3.45e-29,25;CL:0000827,3.45e-29,25;CL:0000236,1.44e-22,14;CL:0000625,1.04e-20,11;CL:0002087,6.56e-15,115;CL:0000624,8.43e-14,6;CL:0002031,6.50e-13,120;CL:0000738,4.02e-12,136;CL:0000945,7.43e-12,24;CL:0000826,7.43e-12,24;CL:0002322,1.87e-11,5;CL:0000540,4.75e-09,6;CL:0000031,4.75e-09,6;CL:0000404,4.75e-09,6;CL:0000037,9.81e-09,168;CL:0002032,4.46e-08,161;CL:0000837,4.46e-08,161;CL:0000988,7.65e-08,177;CL:0000898,8.09e-08,3;CL:0000623,5.02e-07,3;CL:0000825,5.02e-07,3;CL:0002615,9.11e-07,3|ontology_enrichment_development_v019=CL:0000790;1.42e-30;18!CL:0000051;1.18e-25;53!CL:0000031;6.78e-09;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0003688;1.35e-08;6!UBERON:0002358;1.35e-08;6!UBERON:0003684;1.35e-08;6!UBERON:0001178;1.35e-08;6|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.56e-08,6;UBERON:0002358,3.56e-08,6;UBERON:0003684,3.56e-08,6;UBERON:0001178,3.56e-08,6|phase1_expression=0.726713517082227,1.2846031433459,1.69145284915165,1.0007329835313,1.34088328328186,1.74467704820074,0,0,0,0.491467873003018,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0.125542639594803,0.687720651731561,0.328402357799783,0.157421562627358,0,0.383829398097213,0.154816123316076,0,0,0,0.92960640696362,0,0.587200878669695,0,0.601633342410425,0.434021741431704,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,1.75996244461323,2.18455444504853,3.55803701545422,2.98711155796555,3.60356388332411,3.4485146397269,5.94940385506376,4.77026877267682,3.41527781465669,1.17447437874188,0.382273228125229,0,0.560508562981536,0.263384084775077,1.37696839079683,3.14408610199332,2.05601498999509,1.00311897234407,2.93330039970231,2.8406868344084,11.6896037044747,0.557052284425868,2.3568472597987,1.55073726208535,1.35401931882508,0.512365278902701,0.260118695119756,0.657751618414705,0.552700035571697,0.579606171470105,2.81744470007915,1.60524496853828,4.18142095219907,0.453237370790265,1.53288197440768,0.34362744548263,0.506039384039006,3.50421955756506,2.60433381542567,0.950452044448374,1.80690142893327,2.43174561193395,4.99722906209383,2.13099526839615,2.46338399076314,2.01606743224732,2.40696176205157,2.31719046212478,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0.0945348171640679,0.665188192387692,0.175669571386252,1.0478326039817,0,0,0,0,0,0.476981248610684,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0.113432183160021,0.358779271377724,0.427114777637135,0.211931901159562,0.600182192168805,0.309157587715317,0.772921620136887,0.558350568994769,0.675105328965065,0.194874010322397,0,0.460249493211497,0,1.06502877754984,0,0,0.193260853163297,0,0,2.19552671033272,2.12047629314376,3.25343040034651,1.14027160516907,1.51392510525377,1.82488679537915,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0.368965315629341,0,0,0,0,0,0,0,0,0.34779121492523,0.469634776943287,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0.176096868026452,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06375246633948,2.08014873822732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0.448340575974109,1.37921532141349,1.50939302401662,1.54011643535698,0,0,1.54657762555539,0.670065061337395,1.27587750330633,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.630809660135739,0,0,0,0,0.664225598535437,0,0,0,0,0.82707210449155,0.647142602455851,1.38745825144478,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=81606 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29532 | |||
|TSSclassifier=S | |||
|UniProt=B5MCP4,B5MBX5 | |||
|association_with_transcript=0bp_to_ENST00000401506,ENST00000407930,ENST00000467242_5end | |||
|description=CAGE_peak_6_at_LBH_5end | |||
|id=chr2:30455016..30455055,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.01e-26!53;CL:0000051!1.01e-26!53;CL:0000838!1.10e-26!52;CL:0000791!4.85e-15!18;CL:0000789!4.85e-15!18;CL:0002420!4.85e-15!18;CL:0002419!4.85e-15!18;CL:0000790!4.85e-15!18;CL:0000084!6.55e-15!25;CL:0000827!6.55e-15!25;CL:0000236!8.52e-12!14;CL:0000945!5.20e-11!24;CL:0000826!5.20e-11!24;CL:0000625!3.16e-10!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.42e-30;18!CL:0000789;1.42e-30;18!CL:0002419;1.42e-30;18!CL:0000084;3.25e-29;25!CL:0000542;1.18e-25;53!CL:0000236;2.50e-24;13!CL:0000625;1.53e-20;11!CL:0000624;8.98e-14;6!CL:0000945;9.63e-12;24!CL:0002322;1.17e-11;5!CL:0000540;6.78e-09;6!CL:0000404;6.78e-09;6!CL:0000898;1.22e-07;3!CL:0002615;6.91e-07;3!CL:0000623;6.91e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.44e-43,52;CL:0000542,3.56e-42,53;CL:0000051,3.56e-42,53;CL:0000791,9.20e-31,18;CL:0000789,9.20e-31,18;CL:0002420,9.20e-31,18;CL:0002419,9.20e-31,18;CL:0000790,9.20e-31,18;CL:0000084,3.45e-29,25;CL:0000827,3.45e-29,25;CL:0000236,1.44e-22,14;CL:0000625,1.04e-20,11;CL:0002087,6.56e-15,115;CL:0000624,8.43e-14,6;CL:0002031,6.50e-13,120;CL:0000738,4.02e-12,136;CL:0000945,7.43e-12,24;CL:0000826,7.43e-12,24;CL:0002322,1.87e-11,5;CL:0000540,4.75e-09,6;CL:0000031,4.75e-09,6;CL:0000404,4.75e-09,6;CL:0000037,9.81e-09,168;CL:0002032,4.46e-08,161;CL:0000837,4.46e-08,161;CL:0000988,7.65e-08,177;CL:0000898,8.09e-08,3;CL:0000623,5.02e-07,3;CL:0000825,5.02e-07,3;CL:0002615,9.11e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.42e-30;18!CL:0000051;1.18e-25;53!CL:0000031;6.78e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.35e-08;6!UBERON:0002358;1.35e-08;6!UBERON:0003684;1.35e-08;6!UBERON:0001178;1.35e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.56e-08,6;UBERON:0002358,3.56e-08,6;UBERON:0003684,3.56e-08,6;UBERON:0001178,3.56e-08,6 | |||
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| |||
|short_description=p6@LBH | |||
}} |
Revision as of 18:17, 12 September 2013
Short description: | p6@LBH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LBH_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000401506, ENST00000407930, ENST00000467242_5end |
EntrezGene: | LBH |
HGNC: | 29532 |
UniProt: | B5MCP4B5MBX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.44e-43 | 52 |
lymphocyte | 3.56e-42 | 53 |
common lymphoid progenitor | 3.56e-42 | 53 |
mature alpha-beta T cell | 9.20e-31 | 18 |
alpha-beta T cell | 9.20e-31 | 18 |
immature T cell | 9.20e-31 | 18 |
mature T cell | 9.20e-31 | 18 |
immature alpha-beta T cell | 9.20e-31 | 18 |
T cell | 3.45e-29 | 25 |
pro-T cell | 3.45e-29 | 25 |
B cell | 1.44e-22 | 14 |
CD8-positive, alpha-beta T cell | 1.04e-20 | 11 |
nongranular leukocyte | 6.56e-15 | 115 |
CD4-positive, alpha-beta T cell | 8.43e-14 | 6 |
hematopoietic lineage restricted progenitor cell | 6.50e-13 | 120 |
leukocyte | 4.02e-12 | 136 |
lymphocyte of B lineage | 7.43e-12 | 24 |
pro-B cell | 7.43e-12 | 24 |
embryonic stem cell | 1.87e-11 | 5 |
neuron | 4.75e-09 | 6 |
neuroblast | 4.75e-09 | 6 |
electrically signaling cell | 4.75e-09 | 6 |
hematopoietic stem cell | 9.81e-09 | 168 |
hematopoietic oligopotent progenitor cell | 4.46e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.46e-08 | 161 |
hematopoietic cell | 7.65e-08 | 177 |
naive T cell | 8.09e-08 | 3 |
natural killer cell | 5.02e-07 | 3 |
pro-NK cell | 5.02e-07 | 3 |
adipocyte of omentum tissue | 9.11e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.56e-08 | 6 |
peritoneum | 3.56e-08 | 6 |
abdominal cavity | 3.56e-08 | 6 |
visceral peritoneum | 3.56e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.