FFCP PHASE1:Hg19::chr2:27310062..27310077,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3795|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6315|TSSclassifier=S|UniProt=C9JDL1|association_with_transcript=400bp_to_ENST00000429697_5end|coexpression_cluster_id=C5|description=CAGE_peak_3_at_KHK_5end|id=chr2:27310062..27310077,+|ontology_enrichment_celltype=CL:1000497!1.98e-08!18;CL:0002518!1.98e-08!18;CL:1000449!2.86e-08!16;CL:1000507!9.12e-08!12;CL:1000494!9.12e-08!12|ontology_enrichment_celltype_v019=CL:0000182;3.57e-20;12|ontology_enrichment_celltype_v019_2=CL:0000182,3.76e-20,12|ontology_enrichment_development_v019=UBERON:0004161;2.44e-15;11!UBERON:0009497;5.96e-13;13!UBERON:0003104;5.38e-10;31!UBERON:0001041;1.38e-07;30|ontology_enrichment_disease=DOID:171!7.56e-08!10|ontology_enrichment_disease_v019=DOID:9119;4.71e-08;1|ontology_enrichment_disease_v019_2=DOID:9119,4.11e-08,1|ontology_enrichment_uberon=UBERON:0001049!4.45e-16!57;UBERON:0005068!4.45e-16!57;UBERON:0006241!4.45e-16!57;UBERON:0007135!4.45e-16!57;UBERON:0002346!5.12e-16!90;UBERON:0000073!5.62e-15!94;UBERON:0001016!5.62e-15!94;UBERON:0001893!2.95e-14!34;UBERON:0001869!3.23e-14!32;UBERON:0003075!3.96e-14!86;UBERON:0007284!3.96e-14!86;UBERON:0002616!5.63e-14!59;UBERON:0005743!7.23e-14!86;UBERON:0002791!2.25e-13!33;UBERON:0002780!2.34e-13!41;UBERON:0001890!2.34e-13!41;UBERON:0006240!2.34e-13!41;UBERON:0000025!2.80e-13!194;UBERON:0001950!3.50e-13!20;UBERON:0003056!4.14e-13!61;UBERON:0002020!4.94e-13!34;UBERON:0003528!4.94e-13!34;UBERON:0003080!7.06e-13!42;UBERON:0000956!2.11e-12!25;UBERON:0000203!2.11e-12!25;UBERON:0001017!2.90e-12!82;UBERON:0000955!2.99e-12!69;UBERON:0006238!2.99e-12!69;UBERON:0000481!5.38e-12!347;UBERON:0000064!7.36e-12!219;UBERON:0002619!1.22e-11!22;UBERON:0000924!1.58e-10!173;UBERON:0006601!1.58e-10!173;UBERON:0005172!2.50e-10!55;UBERON:0005173!2.50e-10!55;UBERON:0000033!2.93e-10!123;UBERON:0004111!5.91e-10!241;UBERON:0000483!1.08e-09!309;UBERON:0002417!1.47e-09!61;UBERON:0000916!1.47e-09!61;UBERON:0000119!2.09e-09!312;UBERON:0006555!2.42e-09!17;UBERON:0005103!2.42e-09!17;UBERON:0000083!2.42e-09!17;UBERON:0009201!2.42e-09!17;UBERON:0004819!2.42e-09!17;UBERON:0006553!2.42e-09!17;UBERON:0003074!2.42e-09!17;UBERON:0003060!2.42e-09!17;UBERON:0000153!2.99e-09!129;UBERON:0007811!2.99e-09!129;UBERON:0004121!3.15e-09!169;UBERON:0007023!3.42e-09!115;UBERON:0000477!3.59e-09!286;UBERON:0000080!1.18e-08!18;UBERON:0002120!1.18e-08!18;UBERON:0004875!1.18e-08!18;UBERON:0005721!1.18e-08!18;UBERON:0005754!1.18e-08!18;UBERON:0007297!1.18e-08!18;UBERON:0002113!2.68e-08!27;UBERON:0003918!2.68e-08!27;UBERON:0005095!2.68e-08!27;UBERON:0007687!2.68e-08!27;UBERON:0004211!2.86e-08!16;UBERON:0001285!2.86e-08!16;UBERON:0007684!2.86e-08!16;UBERON:0003220!2.86e-08!16;UBERON:0004208!2.86e-08!16;UBERON:0009773!9.12e-08!12;UBERON:0001231!9.12e-08!12;UBERON:0004810!9.12e-08!12;UBERON:0000489!1.70e-07!32;UBERON:0004876!1.72e-07!20;UBERON:0000475!4.40e-07!365;UBERON:0002021!5.24e-07!5;UBERON:0003887!5.37e-07!21|ontology_enrichment_uberon_v019=UBERON:0002107;3.79e-22;19!UBERON:0006925;3.79e-22;19!UBERON:0002423;1.47e-16;25!UBERON:0002108;4.92e-13;4!UBERON:0002365;1.14e-12;31!UBERON:0002330;1.14e-12;31!UBERON:0005172;1.94e-11;52!UBERON:0005173;1.94e-11;52!UBERON:0002368;3.47e-11;33!UBERON:0000160;2.34e-09;17!UBERON:0002417;3.84e-09;58!UBERON:0000916;3.84e-09;58!UBERON:0000949;3.09e-08;43!UBERON:0005409;2.87e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.96e-22,19;UBERON:0006925,3.96e-22,19;UBERON:0008836,3.96e-22,19;UBERON:0008835,5.89e-19,22;UBERON:0003894,5.89e-19,22;UBERON:0009854,4.40e-18,23;UBERON:0007499,1.52e-16,25;UBERON:0009497,1.52e-16,25;UBERON:0000015,1.52e-16,25;UBERON:0002423,1.52e-16,25;UBERON:0006235,1.52e-16,25;UBERON:0004161,1.52e-16,25;UBERON:0009856,7.29e-16,26;UBERON:0005172,8.26e-16,54;UBERON:0005173,8.26e-16,54;UBERON:0002417,5.28e-14,60;UBERON:0000916,5.28e-14,60;UBERON:0002365,4.06e-13,31;UBERON:0002330,4.06e-13,31;UBERON:0002108,4.93e-13,4;UBERON:0002368,1.74e-11,35;UBERON:0000160,2.41e-09,17;UBERON:0005177,8.77e-09,101;UBERON:0000949,1.13e-08,45;UBERON:0004921,1.70e-08,118;UBERON:0009569,1.10e-07,112;UBERON:0003929,4.90e-07,54|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,1.39560233594486,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,7.7932549921139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0.653638332277218,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3795 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6315 | |||
|TSSclassifier=S | |||
|UniProt=C9JDL1 | |||
|association_with_transcript=400bp_to_ENST00000429697_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_KHK_5end | |||
|id=chr2:27310062..27310077,+ | |||
|ontology_enrichment_celltype=CL:1000497!1.98e-08!18;CL:0002518!1.98e-08!18;CL:1000449!2.86e-08!16;CL:1000507!9.12e-08!12;CL:1000494!9.12e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;3.57e-20;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.76e-20,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.44e-15;11!UBERON:0009497;5.96e-13;13!UBERON:0003104;5.38e-10;31!UBERON:0001041;1.38e-07;30 | |||
|ontology_enrichment_disease=DOID:171!7.56e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:9119;4.71e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:9119,4.11e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.45e-16!57;UBERON:0005068!4.45e-16!57;UBERON:0006241!4.45e-16!57;UBERON:0007135!4.45e-16!57;UBERON:0002346!5.12e-16!90;UBERON:0000073!5.62e-15!94;UBERON:0001016!5.62e-15!94;UBERON:0001893!2.95e-14!34;UBERON:0001869!3.23e-14!32;UBERON:0003075!3.96e-14!86;UBERON:0007284!3.96e-14!86;UBERON:0002616!5.63e-14!59;UBERON:0005743!7.23e-14!86;UBERON:0002791!2.25e-13!33;UBERON:0002780!2.34e-13!41;UBERON:0001890!2.34e-13!41;UBERON:0006240!2.34e-13!41;UBERON:0000025!2.80e-13!194;UBERON:0001950!3.50e-13!20;UBERON:0003056!4.14e-13!61;UBERON:0002020!4.94e-13!34;UBERON:0003528!4.94e-13!34;UBERON:0003080!7.06e-13!42;UBERON:0000956!2.11e-12!25;UBERON:0000203!2.11e-12!25;UBERON:0001017!2.90e-12!82;UBERON:0000955!2.99e-12!69;UBERON:0006238!2.99e-12!69;UBERON:0000481!5.38e-12!347;UBERON:0000064!7.36e-12!219;UBERON:0002619!1.22e-11!22;UBERON:0000924!1.58e-10!173;UBERON:0006601!1.58e-10!173;UBERON:0005172!2.50e-10!55;UBERON:0005173!2.50e-10!55;UBERON:0000033!2.93e-10!123;UBERON:0004111!5.91e-10!241;UBERON:0000483!1.08e-09!309;UBERON:0002417!1.47e-09!61;UBERON:0000916!1.47e-09!61;UBERON:0000119!2.09e-09!312;UBERON:0006555!2.42e-09!17;UBERON:0005103!2.42e-09!17;UBERON:0000083!2.42e-09!17;UBERON:0009201!2.42e-09!17;UBERON:0004819!2.42e-09!17;UBERON:0006553!2.42e-09!17;UBERON:0003074!2.42e-09!17;UBERON:0003060!2.42e-09!17;UBERON:0000153!2.99e-09!129;UBERON:0007811!2.99e-09!129;UBERON:0004121!3.15e-09!169;UBERON:0007023!3.42e-09!115;UBERON:0000477!3.59e-09!286;UBERON:0000080!1.18e-08!18;UBERON:0002120!1.18e-08!18;UBERON:0004875!1.18e-08!18;UBERON:0005721!1.18e-08!18;UBERON:0005754!1.18e-08!18;UBERON:0007297!1.18e-08!18;UBERON:0002113!2.68e-08!27;UBERON:0003918!2.68e-08!27;UBERON:0005095!2.68e-08!27;UBERON:0007687!2.68e-08!27;UBERON:0004211!2.86e-08!16;UBERON:0001285!2.86e-08!16;UBERON:0007684!2.86e-08!16;UBERON:0003220!2.86e-08!16;UBERON:0004208!2.86e-08!16;UBERON:0009773!9.12e-08!12;UBERON:0001231!9.12e-08!12;UBERON:0004810!9.12e-08!12;UBERON:0000489!1.70e-07!32;UBERON:0004876!1.72e-07!20;UBERON:0000475!4.40e-07!365;UBERON:0002021!5.24e-07!5;UBERON:0003887!5.37e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.79e-22;19!UBERON:0006925;3.79e-22;19!UBERON:0002423;1.47e-16;25!UBERON:0002108;4.92e-13;4!UBERON:0002365;1.14e-12;31!UBERON:0002330;1.14e-12;31!UBERON:0005172;1.94e-11;52!UBERON:0005173;1.94e-11;52!UBERON:0002368;3.47e-11;33!UBERON:0000160;2.34e-09;17!UBERON:0002417;3.84e-09;58!UBERON:0000916;3.84e-09;58!UBERON:0000949;3.09e-08;43!UBERON:0005409;2.87e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.96e-22,19;UBERON:0006925,3.96e-22,19;UBERON:0008836,3.96e-22,19;UBERON:0008835,5.89e-19,22;UBERON:0003894,5.89e-19,22;UBERON:0009854,4.40e-18,23;UBERON:0007499,1.52e-16,25;UBERON:0009497,1.52e-16,25;UBERON:0000015,1.52e-16,25;UBERON:0002423,1.52e-16,25;UBERON:0006235,1.52e-16,25;UBERON:0004161,1.52e-16,25;UBERON:0009856,7.29e-16,26;UBERON:0005172,8.26e-16,54;UBERON:0005173,8.26e-16,54;UBERON:0002417,5.28e-14,60;UBERON:0000916,5.28e-14,60;UBERON:0002365,4.06e-13,31;UBERON:0002330,4.06e-13,31;UBERON:0002108,4.93e-13,4;UBERON:0002368,1.74e-11,35;UBERON:0000160,2.41e-09,17;UBERON:0005177,8.77e-09,101;UBERON:0000949,1.13e-08,45;UBERON:0004921,1.70e-08,118;UBERON:0009569,1.10e-07,112;UBERON:0003929,4.90e-07,54 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,1.39560233594486,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,7.7932549921139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0.653638332277218,0.237270619111097,0,0,0,0,0,0,0,58.3073160180422,27.5191620669735,45.4908228144681,0,0.368965315629341,0,0,0,0,0,0.325808305310325,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0.784349769176855,1.46139224653261,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0,16.7956848985787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,13.3684197103026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,3.66379164797602,0,0.18714054040822,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0.503865495708552,0.20453736500431,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0.260427761085233,0.174919999992391,0,0,0,0,0.344743373241465,0,0,0.885741385813839,0.361789315876224,1.52581736317083,0.110579259931225,0.886642856860642,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0.141353071433941,0.216388639742091,0,11.0571955629174,3.05515072466813,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.698906672968121,0,0,0.0730893170861856,0,0,0,0.225980740780532,0,0,0.253243183823515,0.195551382734803,0,0,0,0,0.114536596165916,0.514784993585894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,3.30889365690339,3.04938676010316,2.76354529802158,0.590564889088493,0,0,0,0.482259445395058,0.137539436597234,0,0,0,0.242998226632099,0,11.5844389729821,2.62272940674991,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,26.8190587630891,18.550964447711,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.3755727921195,0,0,0.0620964029413835,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.314531883711793,0.109209638192014,0,0.212574920101683,1.98297222814403,1.67593475391973,0,0,0.80057074828547,0,0,0.192687675289379,1.41696576325585,0.159633859057151,0.205116364240755,0.252071696221718,0.899044282034833,0,0,0,0.11796972334774,0,0,0,0,0,0.150420656698515,0,0,0,0,0.295712172434091,0.270150338473579,0,0.206686796501184,0.317079050969534,0,0,0,0.351742488719241,0,0,0,0,0,0,0,0,0.203909198930495,0.263091094251396,0,0,0,0,0,0.913158720509496,0.215927591218621,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0.294450700845729,0,0,0,0,0,1.87151570769685,1.79055697645231,0,0,0.109940516745429,1.20770274853339,22.380505851304,12.6764545092295,0.940634592723046,0,0.707029641304878,0.392616934229891,0,0,0,0,0,0,0,0,0.0802413666891683,0.730336388246517,0,0,0,0.679914901909147,0.872701380680755,6.34832208618481,0,0,0,0,0,1.0135880080915,0,0,0,0,0.227336094654718,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p3@KHK | |||
}} |
Revision as of 18:05, 12 September 2013
Short description: | p3@KHK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_KHK_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 400bp_to_ENST00000429697_5end |
EntrezGene: | KHK |
HGNC: | 6315 |
UniProt: | C9JDL1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.76e-20 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 3.96e-22 | 19 |
digestive gland | 3.96e-22 | 19 |
liver bud | 3.96e-22 | 19 |
hepatic diverticulum | 5.89e-19 | 22 |
liver primordium | 5.89e-19 | 22 |
digestive tract diverticulum | 4.40e-18 | 23 |
epithelial sac | 1.52e-16 | 25 |
epithelium of foregut-midgut junction | 1.52e-16 | 25 |
anatomical boundary | 1.52e-16 | 25 |
hepatobiliary system | 1.52e-16 | 25 |
foregut-midgut junction | 1.52e-16 | 25 |
septum transversum | 1.52e-16 | 25 |
sac | 7.29e-16 | 26 |
abdomen element | 8.26e-16 | 54 |
abdominal segment element | 8.26e-16 | 54 |
abdominal segment of trunk | 5.28e-14 | 60 |
abdomen | 5.28e-14 | 60 |
exocrine gland | 4.06e-13 | 31 |
exocrine system | 4.06e-13 | 31 |
small intestine | 4.93e-13 | 4 |
endocrine gland | 1.74e-11 | 35 |
intestine | 2.41e-09 | 17 |
trunk region element | 8.77e-09 | 101 |
endocrine system | 1.13e-08 | 45 |
subdivision of digestive tract | 1.70e-08 | 118 |
subdivision of trunk | 1.10e-07 | 112 |
gut epithelium | 4.90e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
acute myeloid leukemia | 4.11e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.