FFCP PHASE1:Hg19::chr2:216235008..216235020,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2335|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3778|TSSclassifier=W|UniProt=|association_with_transcript=222bp_to_ENST00000480024_5end|coexpression_cluster_id=C79|description=CAGE_peak_70_at_FN1_5end|id=chr2:216235008..216235020,-|ontology_enrichment_celltype=CL:0000055!1.84e-24!180;CL:0000057!7.71e-20!75;CL:0002371!2.27e-16!591;CL:0000144!3.19e-14!625;CL:0002620!7.21e-14!23;CL:0000548!2.27e-11!679;CL:0000004!2.27e-11!679;CL:0000255!2.27e-11!679;CL:0000012!4.44e-11!682;CL:0000048!1.88e-10!430;CL:0000723!3.72e-10!436;CL:0000034!1.04e-09!444;CL:0000188!1.60e-07!9;CL:0000003!1.73e-07!722;CL:0002334!1.79e-07!12;CL:0000680!2.86e-07!57;CL:0000056!2.86e-07!57;CL:0000355!2.86e-07!57;CL:0002570!3.90e-07!8;CL:0000219!9.28e-07!390|ontology_enrichment_celltype_v019=CL:0000594;3.35e-12;3!CL:0002570;3.98e-12;8!CL:0000188;9.50e-11;9!CL:0002620;5.27e-10;23!CL:1000306;1.09e-09;4!CL:0002547;1.09e-09;4!CL:0000680;5.18e-09;7!CL:0000723;2.06e-07;61|ontology_enrichment_celltype_v019_2=CL:0000594,1.69e-12,3;CL:0002570,4.57e-12,8;CL:0000188,9.07e-11,9;CL:0002620,4.10e-10,23;CL:0000057,8.18e-10,76;CL:1000306,1.11e-09,4;CL:0002547,1.11e-09,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!2.47e-07!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002199!4.65e-11!45;UBERON:0002416!4.65e-11!45;UBERON:0002097!4.32e-10!40;UBERON:0002384!1.55e-07!375;UBERON:0004290!1.83e-07!70;UBERON:0000914!6.52e-07!83;UBERON:0002329!6.52e-07!83;UBERON:0003077!6.52e-07!83;UBERON:0003059!6.52e-07!83;UBERON:0007282!6.52e-07!83;UBERON:0009618!6.52e-07!83;UBERON:0007285!6.52e-07!83;UBERON:0003102!9.07e-07!95|ontology_enrichment_uberon_v019=UBERON:0004797;1.09e-09;4!UBERON:0000415;1.09e-09;4!UBERON:0007240;1.09e-09;4!UBERON:0005742;1.09e-09;4!UBERON:0005734;1.09e-09;4!UBERON:0004664;1.09e-09;4!UBERON:0004663;1.09e-09;4!UBERON:0001134;2.96e-08;16!UBERON:0002036;2.96e-08;16!UBERON:0002097;2.08e-07;41!UBERON:0002199;5.36e-07;46!UBERON:0002416;5.36e-07;46!UBERON:0001013;8.37e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.94e-10,46;UBERON:0002416,3.94e-10,46;UBERON:0002097,8.59e-10,41;UBERON:0000415,1.11e-09,4;UBERON:0007240,1.11e-09,4;UBERON:0005742,1.11e-09,4;UBERON:0005734,1.11e-09,4;UBERON:0004664,1.11e-09,4;UBERON:0004663,1.11e-09,4;UBERON:0001013,9.02e-07,14|phase1_expression=0.54503513781167,1.07050261945492,0.986680828671798,0,0,0,0,0.631719873426831,0,0.245733936501509,0,0.873765488520689,0.263766978228454,0.495065411840187,0,0.672325146451775,0,0.730310090387373,0.975865597581014,0,0.204000691244253,0.313454721478088,0.572471974262113,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,0.511450247374121,0,0.50133791063589,0.144846518960824,1.5905718941022,8.75942766544745,0.0945348171640679,0.665188192387692,0.43917392846563,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,5.69359477496841,1.43418310374407,0.354668382198357,1.12135520028461,0,0.24666754841716,0.622422070799533,0.134710672069688,0.980771418680752,0.756787138224657,0.576175924479999,0,0.936480230490962,0,1.34503812496621,0.23486899728753,0.161872944368132,0.842704840213491,0,0.245668634623536,0,0,0.494533858557114,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0.794025282120147,1.97328599257748,0.427114777637135,0.847727604638247,2.40072876867522,0.206105058476878,3.60696756063881,0.18611685633159,2.53164498361899,0.194874010322397,2.77677151668526,1.10459878370759,0.646584227275248,1.42003837006646,0.201504196455281,0.339121184620975,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,4.64367928031979,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0.343135620597051,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.626909658919938,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.112131084345361,0,0.2933531432838,0.775630294546667,0,0.845302752556,0.26593811658487,0,1.02882949704857,0,0.532844358032199,0.428933980974443,0.542621605391443,0,0.65147236858747,0,0,0,0,0,0,0,0,0.958499421966331,0,0,0.289562613335158,1.2328579353023,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,2.28767947683888,1.78428988797162,0.946214490203608,0.702848489956279,0,0,0,0.664225598535437,0,0.521301686808497,0.195801157462741,0.343143423810856,0,0,0,0,0,0.30239029332968,0.248107807818777,2.91577749247319,0.841980283299221,0.896974044789907,0.511707249066704,0.804269605718038,0,1.23367755042124,0.355123450626254,0.9033987161519,0,0.348631135379878,0.241718899183244,0.40101294060657,0,0.229628896329213,0.546273504020151,0.262248829918848,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=222bp_to_ENST00000480024_5end | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_70_at_FN1_5end | |||
|id=chr2:216235008..216235020,- | |||
|ontology_enrichment_celltype=CL:0000055!1.84e-24!180;CL:0000057!7.71e-20!75;CL:0002371!2.27e-16!591;CL:0000144!3.19e-14!625;CL:0002620!7.21e-14!23;CL:0000548!2.27e-11!679;CL:0000004!2.27e-11!679;CL:0000255!2.27e-11!679;CL:0000012!4.44e-11!682;CL:0000048!1.88e-10!430;CL:0000723!3.72e-10!436;CL:0000034!1.04e-09!444;CL:0000188!1.60e-07!9;CL:0000003!1.73e-07!722;CL:0002334!1.79e-07!12;CL:0000680!2.86e-07!57;CL:0000056!2.86e-07!57;CL:0000355!2.86e-07!57;CL:0002570!3.90e-07!8;CL:0000219!9.28e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000594;3.35e-12;3!CL:0002570;3.98e-12;8!CL:0000188;9.50e-11;9!CL:0002620;5.27e-10;23!CL:1000306;1.09e-09;4!CL:0002547;1.09e-09;4!CL:0000680;5.18e-09;7!CL:0000723;2.06e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000594,1.69e-12,3;CL:0002570,4.57e-12,8;CL:0000188,9.07e-11,9;CL:0002620,4.10e-10,23;CL:0000057,8.18e-10,76;CL:1000306,1.11e-09,4;CL:0002547,1.11e-09,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.47e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!4.65e-11!45;UBERON:0002416!4.65e-11!45;UBERON:0002097!4.32e-10!40;UBERON:0002384!1.55e-07!375;UBERON:0004290!1.83e-07!70;UBERON:0000914!6.52e-07!83;UBERON:0002329!6.52e-07!83;UBERON:0003077!6.52e-07!83;UBERON:0003059!6.52e-07!83;UBERON:0007282!6.52e-07!83;UBERON:0009618!6.52e-07!83;UBERON:0007285!6.52e-07!83;UBERON:0003102!9.07e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;1.09e-09;4!UBERON:0000415;1.09e-09;4!UBERON:0007240;1.09e-09;4!UBERON:0005742;1.09e-09;4!UBERON:0005734;1.09e-09;4!UBERON:0004664;1.09e-09;4!UBERON:0004663;1.09e-09;4!UBERON:0001134;2.96e-08;16!UBERON:0002036;2.96e-08;16!UBERON:0002097;2.08e-07;41!UBERON:0002199;5.36e-07;46!UBERON:0002416;5.36e-07;46!UBERON:0001013;8.37e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.94e-10,46;UBERON:0002416,3.94e-10,46;UBERON:0002097,8.59e-10,41;UBERON:0000415,1.11e-09,4;UBERON:0007240,1.11e-09,4;UBERON:0005742,1.11e-09,4;UBERON:0005734,1.11e-09,4;UBERON:0004664,1.11e-09,4;UBERON:0004663,1.11e-09,4;UBERON:0001013,9.02e-07,14 | |||
|phase1_expression=0.54503513781167,1.07050261945492,0.986680828671798,0,0,0,0,0.631719873426831,0,0.245733936501509,0,0.873765488520689,0.263766978228454,0.495065411840187,0,0.672325146451775,0,0.730310090387373,0.975865597581014,0,0.204000691244253,0.313454721478088,0.572471974262113,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,0.511450247374121,0,0.50133791063589,0.144846518960824,1.5905718941022,8.75942766544745,0.0945348171640679,0.665188192387692,0.43917392846563,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,5.69359477496841,1.43418310374407,0.354668382198357,1.12135520028461,0,0.24666754841716,0.622422070799533,0.134710672069688,0.980771418680752,0.756787138224657,0.576175924479999,0,0.936480230490962,0,1.34503812496621,0.23486899728753,0.161872944368132,0.842704840213491,0,0.245668634623536,0,0,0.494533858557114,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0.794025282120147,1.97328599257748,0.427114777637135,0.847727604638247,2.40072876867522,0.206105058476878,3.60696756063881,0.18611685633159,2.53164498361899,0.194874010322397,2.77677151668526,1.10459878370759,0.646584227275248,1.42003837006646,0.201504196455281,0.339121184620975,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,4.64367928031979,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0.343135620597051,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.626909658919938,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.112131084345361,0,0.2933531432838,0.775630294546667,0,0.845302752556,0.26593811658487,0,1.02882949704857,0,0.532844358032199,0.428933980974443,0.542621605391443,0,0.65147236858747,0,0,0,0,0,0,0,0,0.958499421966331,0,0,0.289562613335158,1.2328579353023,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,2.28767947683888,1.78428988797162,0.946214490203608,0.702848489956279,0,0,0,0.664225598535437,0,0.521301686808497,0.195801157462741,0.343143423810856,0,0,0,0,0,0.30239029332968,0.248107807818777,2.91577749247319,0.841980283299221,0.896974044789907,0.511707249066704,0.804269605718038,0,1.23367755042124,0.355123450626254,0.9033987161519,0,0.348631135379878,0.241718899183244,0.40101294060657,0,0.229628896329213,0.546273504020151,0.262248829918848,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0,0,0,0,1.30012049207304,0,0.096670718292122,2.00263202249038,1.07452572308291,0.964856007391714,1.93356440762893,1.30515024522806,1.36362603865761,0.712256285173899,0.495854746082934,0.192190067365106,2.16941611240793,0,0,5.35180989612088,0,0,0,0,0.18532421910392,0,0,0,0,0.767693373934002,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0.272999822815972,0.707027159768564,0,0,0.66343897524122,0.438450885253763,0,0,0,0.30982349809975,0.281695602532241,0,0.491245205065606,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,4.56365690593914,0,0,0,0,0,0,0,1.86623752597084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0.31900115973192,0.457987967009312,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,2.16179930125442,0,0.472699093843342,0.412079291905832,0.404421263125109,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02232813071253,0.113312091520126,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0.606596470166591,0,0,0,0,1.64180283175561,1.63599316893057,2.77402930751307,2.27283606330107,0.754703705257725,2.66943366478961,0.228840068396924,1.66354016139563,0.310874401165561,0.887130899937803,0.159296767163702,0,0.931577741257556,0.829412415681711,1.32920857278997,2.08698024724694,0.150257608997218,0.761610424337591,1.22061219961398,0.363697318405119,0.429642228169954,0,1.99047944349308,0.400027764663154,1.03018711554838,1.01024846629776,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25812753484717,0,0,0,0.495743057036009,0,0.954013051960256,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,0.80682027481408,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0.527613733078862,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0.207216164163037,0.17071847709395,0,0,0.236664001461131,0.0852134047591577,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0195626881269,0,0,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| |||
|short_description=p70@FN1 | |||
}} |
Revision as of 16:32, 12 September 2013
Short description: | p70@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_70_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 222bp_to_ENST00000480024_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skeletal muscle satellite cell | 1.69e-12 | 3 |
mesenchymal stem cell of adipose | 4.57e-12 | 8 |
cell of skeletal muscle | 9.07e-11 | 9 |
skin fibroblast | 4.10e-10 | 23 |
fibroblast | 8.18e-10 | 76 |
fibroblast of tunica adventitia of artery | 1.11e-09 | 4 |
fibroblast of the aortic adventitia | 1.11e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
integument | 3.94e-10 | 46 |
integumental system | 3.94e-10 | 46 |
skin of body | 8.59e-10 | 41 |
artery wall | 1.11e-09 | 4 |
tunica adventitia of artery | 1.11e-09 | 4 |
adventitia | 1.11e-09 | 4 |
tunica adventitia of blood vessel | 1.11e-09 | 4 |
aorta tunica adventitia | 1.11e-09 | 4 |
aorta wall | 1.11e-09 | 4 |
adipose tissue | 9.02e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.