FFCP PHASE1:Hg19::chr2:206547199..206547206,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8828|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8005|TSSclassifier=S|UniProt=E9PF66,O60462,F5H1G4,F5H2X3,Q7LBX6,Q7Z3T9,Q9H2E2,Q7LBX7|association_with_transcript=-17bp_to_ENST00000355117,ENST00000360409,ENST00000540178,ENST00000540841,NM_003872,NM_018534,NM_201264,NM_201266,NM_201267,NM_201279,uc002vat.2,uc002vau.2,uc002vav.2,uc002vaw.2,uc002vax.2,uc002vay.2_5end|coexpression_cluster_id=C4174|description=CAGE_peak_3_at_NRP2_5end|id=chr2:206547199..206547206,+|ontology_enrichment_celltype=CL:0000115!1.20e-12!35;CL:0002078!3.11e-10!44;CL:0002139!4.67e-10!24;CL:0000213!6.43e-08!57;CL:0000215!6.43e-08!57;CL:0000222!8.48e-08!119;CL:0002321!3.66e-07!248;CL:0000220!3.88e-07!246;CL:0000071!4.23e-07!18;CL:0002546!4.23e-07!18|ontology_enrichment_celltype_v019=CL:0000115;4.65e-12;36!CL:0002139;1.29e-10;24!CL:0000071;8.50e-07;18|ontology_enrichment_celltype_v019_2=CL:0000115,1.59e-14,36;CL:0002139,8.24e-11,24;CL:0002078,3.06e-10,45;CL:0000213,2.00e-08,58;CL:0000215,2.00e-08,58;CL:0000222,2.78e-07,121;CL:0000071,5.76e-07,18;CL:0002546,5.76e-07,18|ontology_enrichment_development_v019=CL:0002546;8.50e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;1.70e-08;14|ontology_enrichment_disease_v019_2=DOID:2394,1.64e-08,14|ontology_enrichment_uberon=UBERON:0000468!5.52e-14!659;UBERON:0000467!8.47e-12!625;UBERON:0000480!1.41e-11!626;UBERON:0000922!2.14e-10!612;UBERON:0002050!1.85e-09!605;UBERON:0005423!1.85e-09!605;UBERON:0002049!2.95e-09!79;UBERON:0007798!2.95e-09!79;UBERON:0000923!3.93e-09!604;UBERON:0005291!3.93e-09!604;UBERON:0006598!3.93e-09!604;UBERON:0002532!3.93e-09!604;UBERON:0000055!1.58e-08!69;UBERON:0000483!5.22e-08!309;UBERON:0004111!8.87e-08!241;UBERON:0000119!9.52e-08!312;UBERON:0001981!1.24e-07!60;UBERON:0007500!1.24e-07!60;UBERON:0004537!1.24e-07!60;UBERON:0006965!1.24e-07!60;UBERON:0000487!2.25e-07!22;UBERON:0000025!2.61e-07!194;UBERON:0001986!4.23e-07!18;UBERON:0004638!4.23e-07!18;UBERON:0004852!4.23e-07!18;UBERON:0003914!5.36e-07!118;UBERON:0006914!8.34e-07!25|ontology_enrichment_uberon_v019=UBERON:0000992;7.02e-08;13!UBERON:0000487;1.01e-07;22!UBERON:0006914;6.76e-07;25!UBERON:0004638;8.50e-07;18!UBERON:0001986;8.50e-07;18!UBERON:0004852;8.50e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0002049,9.88e-10,78;UBERON:0007798,9.88e-10,78;UBERON:0000055,6.85e-09,68;UBERON:0000926,5.14e-08,315;UBERON:0004120,5.14e-08,315;UBERON:0006603,5.14e-08,315;UBERON:0000487,8.34e-08,22;UBERON:0000992,9.07e-08,13;UBERON:0007500,4.26e-07,59;UBERON:0001981,4.26e-07,59;UBERON:0004537,4.26e-07,59;UBERON:0006965,4.26e-07,59;UBERON:0006914,5.12e-07,25;UBERON:0004638,5.76e-07,18;UBERON:0001986,5.76e-07,18;UBERON:0004852,5.76e-07,18;UBERON:0003914,6.34e-07,117|phase1_expression=1.45342703416445,2.99740733447376,1.69145284915165,1.0007329835313,2.68176656656373,0,0,1.26343974685366,0.783556884599516,0,0.697801167972428,0,0,0.247532705920093,0.331397375727916,2.6893005858071,2.41077811209591,2.19093027116212,1.46379839637152,1.47745269692145,2.85600967741954,1.56727360739044,1.14494394852423,4.37998160233229,2.25976751270645,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,1.10799081706375,0.601633342410425,0.217010870715852,1.11957737119962,2.59114932815184,2.57575567634187,0.145398238779565,1.13362783106643,0,0,0,0.309706370895104,4.60307827715441,1.7931249457037,2.12834006899727,1.03423704220986,0.645484683583826,0,0,0.272906150057846,0.449446968890169,0.306083892370903,0.320929027076094,1.27867425159808,0.659702600373432,3.59034583718937,0,3.48251086354301,2.26954089876456,1.24564449799115,2.51248665256743,3.12889751052121,1.73751075764093,1.21079900526674,2.57794345191295,0.949387162322653,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493313713811028,0.552700035571697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81297636055767,0.722878304769133,0.50133791063589,1.01392563272577,3.1811437882044,7.29952305453954,2.17430079477356,1.10864698731282,2.54720878510066,1.17881167947941,0.728590576585084,0,0.97364218096405,0.696518949197069,1.59549552622638,0,0,0,0.993812036833525,0.860234595106124,1.04142150482278,2.26123176769604,1.25849830862972,0.825354125820202,1.25396979922086,3.6178346283706,14.2306505074684,8.36801531911676,2.41697590265488,3.04108842287405,8.7862340717341,2.94130464276695,1.62028389576352,1.96459402224975,5.61323431565425,2.59006405111641,3.06633274931766,1.89853131913626,3.66403487860815,0,0,0.436094052142534,0.496971951695318,1.13967460498122,1.72131935057184,2.29469296599051,0,1.12135520028461,1.06748995729705,0.74000264525148,0.933633106199299,0.538842688278752,0.163461903113459,0.756787138224657,0,0.70296429550139,0.312160076830321,0,0.149448680551801,0.117434498643765,0,0,0,0.245668634623536,0.206651562351531,0,0.494533858557114,0,0,0.168336113954066,0.250237039743928,0,1.31693286264251,0.30648779579902,1.05166641234618,0.794025282120147,2.1526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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8828 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8005 | |||
|TSSclassifier=S | |||
|UniProt=E9PF66,O60462,F5H1G4,F5H2X3,Q7LBX6,Q7Z3T9,Q9H2E2,Q7LBX7 | |||
|association_with_transcript=-17bp_to_ENST00000355117,ENST00000360409,ENST00000540178,ENST00000540841,NM_003872,NM_018534,NM_201264,NM_201266,NM_201267,NM_201279,uc002vat.2,uc002vau.2,uc002vav.2,uc002vaw.2,uc002vax.2,uc002vay.2_5end | |||
|coexpression_cluster_id=C4174 | |||
|description=CAGE_peak_3_at_NRP2_5end | |||
|id=chr2:206547199..206547206,+ | |||
|ontology_enrichment_celltype=CL:0000115!1.20e-12!35;CL:0002078!3.11e-10!44;CL:0002139!4.67e-10!24;CL:0000213!6.43e-08!57;CL:0000215!6.43e-08!57;CL:0000222!8.48e-08!119;CL:0002321!3.66e-07!248;CL:0000220!3.88e-07!246;CL:0000071!4.23e-07!18;CL:0002546!4.23e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000115;4.65e-12;36!CL:0002139;1.29e-10;24!CL:0000071;8.50e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.59e-14,36;CL:0002139,8.24e-11,24;CL:0002078,3.06e-10,45;CL:0000213,2.00e-08,58;CL:0000215,2.00e-08,58;CL:0000222,2.78e-07,121;CL:0000071,5.76e-07,18;CL:0002546,5.76e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;8.50e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.70e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.64e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!5.52e-14!659;UBERON:0000467!8.47e-12!625;UBERON:0000480!1.41e-11!626;UBERON:0000922!2.14e-10!612;UBERON:0002050!1.85e-09!605;UBERON:0005423!1.85e-09!605;UBERON:0002049!2.95e-09!79;UBERON:0007798!2.95e-09!79;UBERON:0000923!3.93e-09!604;UBERON:0005291!3.93e-09!604;UBERON:0006598!3.93e-09!604;UBERON:0002532!3.93e-09!604;UBERON:0000055!1.58e-08!69;UBERON:0000483!5.22e-08!309;UBERON:0004111!8.87e-08!241;UBERON:0000119!9.52e-08!312;UBERON:0001981!1.24e-07!60;UBERON:0007500!1.24e-07!60;UBERON:0004537!1.24e-07!60;UBERON:0006965!1.24e-07!60;UBERON:0000487!2.25e-07!22;UBERON:0000025!2.61e-07!194;UBERON:0001986!4.23e-07!18;UBERON:0004638!4.23e-07!18;UBERON:0004852!4.23e-07!18;UBERON:0003914!5.36e-07!118;UBERON:0006914!8.34e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000992;7.02e-08;13!UBERON:0000487;1.01e-07;22!UBERON:0006914;6.76e-07;25!UBERON:0004638;8.50e-07;18!UBERON:0001986;8.50e-07;18!UBERON:0004852;8.50e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,9.88e-10,78;UBERON:0007798,9.88e-10,78;UBERON:0000055,6.85e-09,68;UBERON:0000926,5.14e-08,315;UBERON:0004120,5.14e-08,315;UBERON:0006603,5.14e-08,315;UBERON:0000487,8.34e-08,22;UBERON:0000992,9.07e-08,13;UBERON:0007500,4.26e-07,59;UBERON:0001981,4.26e-07,59;UBERON:0004537,4.26e-07,59;UBERON:0006965,4.26e-07,59;UBERON:0006914,5.12e-07,25;UBERON:0004638,5.76e-07,18;UBERON:0001986,5.76e-07,18;UBERON:0004852,5.76e-07,18;UBERON:0003914,6.34e-07,117 | |||
|phase1_expression=1.45342703416445,2.99740733447376,1.69145284915165,1.0007329835313,2.68176656656373,0,0,1.26343974685366,0.783556884599516,0,0.697801167972428,0,0,0.247532705920093,0.331397375727916,2.6893005858071,2.41077811209591,2.19093027116212,1.46379839637152,1.47745269692145,2.85600967741954,1.56727360739044,1.14494394852423,4.37998160233229,2.25976751270645,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,1.10799081706375,0.601633342410425,0.217010870715852,1.11957737119962,2.59114932815184,2.57575567634187,0.145398238779565,1.13362783106643,0,0,0,0.309706370895104,4.60307827715441,1.7931249457037,2.12834006899727,1.03423704220986,0.645484683583826,0,0,0.272906150057846,0.449446968890169,0.306083892370903,0.320929027076094,1.27867425159808,0.659702600373432,3.59034583718937,0,3.48251086354301,2.26954089876456,1.24564449799115,2.51248665256743,3.12889751052121,1.73751075764093,1.21079900526674,2.57794345191295,0.949387162322653,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493313713811028,0.552700035571697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81297636055767,0.722878304769133,0.50133791063589,1.01392563272577,3.1811437882044,7.29952305453954,2.17430079477356,1.10864698731282,2.54720878510066,1.17881167947941,0.728590576585084,0,0.97364218096405,0.696518949197069,1.59549552622638,0,0,0,0.993812036833525,0.860234595106124,1.04142150482278,2.26123176769604,1.25849830862972,0.825354125820202,1.25396979922086,3.6178346283706,14.2306505074684,8.36801531911676,2.41697590265488,3.04108842287405,8.7862340717341,2.94130464276695,1.62028389576352,1.96459402224975,5.61323431565425,2.59006405111641,3.06633274931766,1.89853131913626,3.66403487860815,0,0,0.436094052142534,0.496971951695318,1.13967460498122,1.72131935057184,2.29469296599051,0,1.12135520028461,1.06748995729705,0.74000264525148,0.933633106199299,0.538842688278752,0.163461903113459,0.756787138224657,0,0.70296429550139,0.312160076830321,0,0.149448680551801,0.117434498643765,0,0,0,0.245668634623536,0.206651562351531,0,0.494533858557114,0,0,0.168336113954066,0.250237039743928,0,1.31693286264251,0.30648779579902,1.05166641234618,0.794025282120147,2.15267562826634,0.640672166455702,0.211931901159562,0.600182192168805,0.515262646192195,1.54584324027377,0.18611685633159,3.54430297706659,0.876933046450788,0.504867548488229,0.460249493211497,1.13152239773168,2.84007674013291,1.0075209822764,0.339121184620975,0.386521706326594,0.545492241181669,0.573609190778008,0.609868530647977,0.397589304964456,0.813357600086629,1.24393266018445,1.51392510525377,0.36497735907583,6.25798129319264,1.28648187638577,2.76269842704961,5.57241513638375,2.16563844500876,0,0,0.241011029883482,0,0,0,0.134831308160164,0,0,8.85786545549578,7.01208869017229,3.2925920906512,1.47008711385542,0,0,0,0,0.614942192715568,2.23038153388083,0.219500570817251,1.1240175325762,0.402115889646523,1.01847289674383,0.651616610620649,2.07986957055916,0,10.7815276626821,10.8015998696956,4.04226053731007,1.38895653772983,2.47330397904978,0,0,2.70838706696137,3.7440682422278,1.78357394746474,0,0.16798212819886,0.708875486211932,0.716468181622786,1.16253575405585,0.383382679165211,2.95597942737566,1.32072651019839,1.24396869324463,0.864719720501769,2.01987893482208,1.96843472305724,0.763976851116555,4.68869788840188,0,0.925447434329912,1.8020583470635,5.43070221998099,0,0.43596006883328,0.1466765716419,2.45616259939778,0,0.845302752556,0.797814349754612,0,0.257207374262142,0,0,1.42977993658148,4.34097284313154,3.29296134712308,0.325736184293735,3.19852753868291,1.58390374586686,1.80863626235752,0.871533458600294,4.79870357673874,0,1.50677127429638,0,0,0,4.27910715122155,0.144781306667579,0,0.895304816199478,0,0,0,0,3.04913549066956,5.20559415430487,1.54657762555539,0.502548796003046,1.27587750330633,0,0,0,0.36807447515742,1.50051156317903,0.271265023699736,0.623912584592421,0,0.315404830067869,0.234282829985426,1.80567659836631,2.27407504055985,0,0,1.29058417979192,0,1.17480694477644,0.686286847621712,0,0,0.106727557803444,0,0,0,0,4.60385919864187,1.12264037773229,0.256278298511402,2.55853624533352,0.482561763430822,5.93672265779964,0.925258162815933,0.532685175939381,0,1.55776328755086,0.232420756919918,0.483437798366489,0,0.368323955743585,0.918515585316854,0.364182336013434,0.917870904715969,1.35359883872224,0.231046011313244,2.35304930753057,1.46139224653261,0.316654886678627,9.09867072567173,3.91215522135986,6.90930931526846,3.08454505380579,1.08378575017541,1.50506932156456,0.509752546090077,0,0.671624264166535,0,0,0.769350375349168,0.328014645699706,0,0.9273691048295,0.732555718546747,0.577566499444116,0,0,3.21367859688319,0.096670718292122,0.616194468458578,0.15350367472613,0,1.71872391789238,1.74020032697074,0.340906509664404,0.0890320356467374,0.330569830721956,0.192190067365106,1.40373983744043,1.31505115112215,0.464845549297286,0.62962469366128,0,0.616067160352178,0.532306030317022,0,1.11194531462352,0.572499546967965,0,1.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| |||
|short_description=p3@NRP2 | |||
}} |
Revision as of 16:11, 12 September 2013
Short description: | p3@NRP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NRP2_5end |
Coexpression cluster: | C4174_Endothelial_mesenchymal_epithelioid_Hepatic_migratory_Neural_Mast |
Association with transcript: | -17bp_to_ENST00000355117, ENST00000360409, ENST00000540178, ENST00000540841, NM_003872, NM_018534, NM_201264, NM_201266, NM_201267, NM_201279, uc002vat.2, uc002vau.2, uc002vav.2, uc002vaw.2, uc002vax.2, uc002vay.2_5end |
EntrezGene: | NRP2 |
HGNC: | 8005 |
UniProt: | E9PF66O60462F5H1G4F5H2X3Q7LBX6Q7Z3T9Q9H2E2Q7LBX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.59e-14 | 36 |
endothelial cell of vascular tree | 8.24e-11 | 24 |
meso-epithelial cell | 3.06e-10 | 45 |
lining cell | 2.00e-08 | 58 |
barrier cell | 2.00e-08 | 58 |
mesodermal cell | 2.78e-07 | 121 |
blood vessel endothelial cell | 5.76e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.76e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
vasculature | 9.88e-10 | 78 |
vascular system | 9.88e-10 | 78 |
vessel | 6.85e-09 | 68 |
mesoderm | 5.14e-08 | 315 |
mesoderm-derived structure | 5.14e-08 | 315 |
presumptive mesoderm | 5.14e-08 | 315 |
simple squamous epithelium | 8.34e-08 | 22 |
female gonad | 9.07e-08 | 13 |
epithelial tube open at both ends | 4.26e-07 | 59 |
blood vessel | 4.26e-07 | 59 |
blood vasculature | 4.26e-07 | 59 |
vascular cord | 4.26e-07 | 59 |
squamous epithelium | 5.12e-07 | 25 |
blood vessel endothelium | 5.76e-07 | 18 |
endothelium | 5.76e-07 | 18 |
cardiovascular system endothelium | 5.76e-07 | 18 |
epithelial tube | 6.34e-07 | 117 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.64e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.