FFCP PHASE1:Hg19::chr2:109403193..109403270,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=165055|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26531|TSSclassifier=S|UniProt=Q96M89,F8WF51|association_with_transcript=0bp_to_ENST00000295124,ENST00000409529,ENST00000412964,ENST00000447782,ENST00000470608,NM_144978,uc002ten.1,uc002teo.1,uc002tep.1,uc010fjm.1_5end|coexpression_cluster_id=C109|description=CAGE_peak_1_at_CCDC138_5end|id=chr2:109403193..109403270,+|ontology_enrichment_celltype=CL:0000542!3.57e-09!53;CL:0000051!3.57e-09!53;CL:0000838!9.12e-09!52|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000542,3.51e-09,53;CL:0000051,3.51e-09,53;CL:0000838,8.98e-09,52|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!9.33e-50!235;DOID:14566!1.13e-46!239;DOID:0050687!1.13e-27!143;DOID:305!1.08e-24!106;DOID:0050686!2.30e-23!137;DOID:2531!1.00e-17!51;DOID:0060083!1.00e-17!51;DOID:1240!1.12e-13!39;DOID:8692!9.37e-11!31;DOID:3095!9.03e-07!22;DOID:2994!9.03e-07!22|ontology_enrichment_disease_v019=DOID:1240;1.97e-11;39!DOID:2531;2.33e-11;51!DOID:0060083;2.33e-11;51!DOID:8692;1.73e-10;31!DOID:305;6.21e-08;106!DOID:0050687;2.52e-07;143!DOID:3095;4.93e-07;22!DOID:2994;4.93e-07;22|ontology_enrichment_disease_v019_2=DOID:162,6.20e-50,235;DOID:14566,5.68e-47,239;DOID:0050687,8.86e-28,143;DOID:305,1.03e-24,106;DOID:0050686,1.93e-23,137;DOID:2531,9.68e-18,51;DOID:0060083,9.68e-18,51;DOID:1240,1.09e-13,39;DOID:8692,9.19e-11,31;DOID:3095,7.78e-07,22;DOID:2994,7.78e-07,22|ontology_enrichment_uberon=UBERON:0000073!1.42e-09!94;UBERON:0001016!1.42e-09!94;UBERON:0001017!3.58e-08!82;UBERON:0005743!5.95e-08!86|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.65e-10,89;UBERON:0001017,1.73e-08,81;UBERON:0011216,1.41e-07,223|phase1_expression=1.99846217197612,2.78330681058278,1.83240725324762,1.0007329835313,1.78784437770915,0.872338524100369,5.06599756336621,1.89515962028049,1.56711376919903,3.68600904752263,2.09340350391728,1.96597234917155,0.791300934685361,1.36142988256051,1.32558950291166,4.03395087871065,3.01347264011988,3.65155045193687,0.975865597581014,4.80172126499473,4.89601658986207,1.25381888591235,16.8879232407323,13.4136936571427,19.8357370559788,13.6015862231353,15.0244078693401,16.6079748571863,2.75354993794233,4.22212337906934,1.85779347979291,11.0330546937471,2.409647350226,2.58827807116751,33.6207650518509,40.9447389563774,13.505620209403,2.21598163412751,3.00816671205213,1.51907609501096,2.91090116511902,3.2389366601898,2.57575567634187,0.290796477559129,0.755751887377619,0.485168122375632,0.929716147622738,0.411167888021826,0.929119112685311,0.863077176966451,1.0246428261164,0.709446689665756,1.03423704220986,3.22742341791913,1.35426486594342,0.752969358170419,0.272906150057846,0.674170453335254,0.918251677112708,0.320929027076094,0,0.659702600373432,0.398927315243264,0.426224750532694,0.580418477257168,0,0,1.00499466102697,1.0429658368404,1.95469960234605,2.42159801053347,0.736555271975129,0.949387162322653,3.80259515361495,1.4882300997553,2.72556239160889,1.90958672949042,1.05123824989054,1.92870704036496,1.99508920618874,2.18808344918999,2.00930569141097,7.03984977845291,9.28435639145624,5.33705552318133,8.10787422876364,8.40831572775626,8.62128659931725,3.96626923670917,7.63243003628291,11.384259382189,6.45960908308033,8.41001101875504,2.64342657158052,11.2101712596307,12.6424360692037,6.09800287352883,3.93010762749165,6.16804496998528,8.86088425570594,8.47397893247335,8.04861269749047,7.79306913631645,6.90744832688076,9.42738903919479,7.97522020501036,12.9985854607207,6.53265730600943,5.9827299877544,4.27538551969558,7.18510046243206,4.34704628602579,8.89719378972362,7.49114318651197,8.36284190439814,9.51798478659556,7.66440987203842,7.90343124610049,9.1087089127021,8.60126618675061,11.0684187155591,3.8018081777935,8.2816315492775,9.47100922542696,12.4930726552346,6.62976305723247,11.4957919568947,7.86266298576456,4.27904313253612,5.64815175142916,4.87613732627923,3.35350429851818,3.58015173161885,4.69870898099936,1.50401373190767,1.30361867064741,2.3858578411533,0.486634870302636,11.15510842536,6.20842312895179,6.85111328406383,5.82856885964821,2.18577172975525,0.370784442784429,1.62273696827342,1.0447784237956,0.531831842075461,10.9705687180457,16.0158575018436,10.7722675385574,3.9752481473341,3.4409383804245,2.08284300964557,1.13061588384802,2.09749718104953,1.10047216776027,2.29894463190492,4.13466814670926,4.62496141492723,6.35969164252873,2.01414658554573,2.28081631715554,0.976248230192678,6.25027236587977,0,10.6266676658055,7.85852804191594,7.31974623141594,6.13266549863533,2.84779697870439,1.83201743930407,1.31780417436063,0,0.872188104285069,2.48485975847659,4.30543739659571,4.36950296683622,4.58938593198102,3.54668382198357,1.68203280042692,2.1349799145941,1.97334038733728,7.15785381419462,4.58016285036939,7.68270944633256,3.02714855289863,0,2.10889288650417,3.74592092196385,3.4228309292667,1.64393548606981,10.8039738752264,9.06488488461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0276174,8.89851215136553,4.00314773537622,4.87058328739606,12.6122473491205,7.30526976407596,9.71674160483796,10.9882888214022,3.28792103212619,51.5124374248689,12.5540739397575,25.3833077561766,4.00855682365126,6.83813341738022,5.1215543128185,6.22133695632683,1.29068207646083,4.14162002556979,5.0275908807903,3.38709640152743,8.93516787321795,12.0980490409085,19.1107787795487,7.49431393045209,4.80936144714691,15.6054943977305,0.647428837187895,1.33461648913121,3.4794432940146,5.82853191670967,10.2933363923326,20.2929790664596,14.0325707117531,29.9307117403244,39.5785860283545,14.0395444517006,2.70109553377806,5.24542945209498,3.76253837089218,3.43207650455468,1.17838273550813,6.0855624805633,9.20843841013967,13.5249832826688,2.0391253762538,3.57138888323444,3.80301539044105,16.3903495716883,10.8917902549451,4.58763333230399,8.585826235741,2.19100916473955,4.12856355064087,6.30694165866386,30.4499115032846,4.69141282317311,15.7086248522536,6.34832208618481,2.60396512716726,0.924351257262837,2.16313281061895,23.3407885944896,36.3854354639106,20.018363159807,11.6267265905859,20.3085228001826,18.1951901078993,12.2846694253264,15.9893053240485,15.2739554189022,9.12086383404657,8.79180464826109,6.82348742083139,10.4748349844046,20.0225620491619,15.3945291453728,8.07349410580417,2.73682780596109,3.84022659020617,3.9189014621453,3.08009970976753,4.71464371102113,9.46733111183328,4.65724499164419,19.4553811980229,16.6494659569236,0,5.83863813692815,7.03922827210363,8.80138398116638,8.13792356631477,9.32059483859718,2.21401172950129,6.09080135376143|short_description=p1@CCDC138}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=165055 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26531 | |||
|TSSclassifier=S | |||
|UniProt=Q96M89,F8WF51 | |||
|association_with_transcript=0bp_to_ENST00000295124,ENST00000409529,ENST00000412964,ENST00000447782,ENST00000470608,NM_144978,uc002ten.1,uc002teo.1,uc002tep.1,uc010fjm.1_5end | |||
|coexpression_cluster_id=C109 | |||
|description=CAGE_peak_1_at_CCDC138_5end | |||
|id=chr2:109403193..109403270,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.57e-09!53;CL:0000051!3.57e-09!53;CL:0000838!9.12e-09!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.51e-09,53;CL:0000051,3.51e-09,53;CL:0000838,8.98e-09,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.33e-50!235;DOID:14566!1.13e-46!239;DOID:0050687!1.13e-27!143;DOID:305!1.08e-24!106;DOID:0050686!2.30e-23!137;DOID:2531!1.00e-17!51;DOID:0060083!1.00e-17!51;DOID:1240!1.12e-13!39;DOID:8692!9.37e-11!31;DOID:3095!9.03e-07!22;DOID:2994!9.03e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.97e-11;39!DOID:2531;2.33e-11;51!DOID:0060083;2.33e-11;51!DOID:8692;1.73e-10;31!DOID:305;6.21e-08;106!DOID:0050687;2.52e-07;143!DOID:3095;4.93e-07;22!DOID:2994;4.93e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.20e-50,235;DOID:14566,5.68e-47,239;DOID:0050687,8.86e-28,143;DOID:305,1.03e-24,106;DOID:0050686,1.93e-23,137;DOID:2531,9.68e-18,51;DOID:0060083,9.68e-18,51;DOID:1240,1.09e-13,39;DOID:8692,9.19e-11,31;DOID:3095,7.78e-07,22;DOID:2994,7.78e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.42e-09!94;UBERON:0001016!1.42e-09!94;UBERON:0001017!3.58e-08!82;UBERON:0005743!5.95e-08!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.65e-10,89;UBERON:0001017,1.73e-08,81;UBERON:0011216,1.41e-07,223 | |||
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| |||
|short_description=p1@CCDC138 | |||
}} |
Revision as of 12:55, 12 September 2013
Short description: | p1@CCDC138 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CCDC138_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | 0bp_to_ENST00000295124, ENST00000409529, ENST00000412964, ENST00000447782, ENST00000470608, NM_144978, uc002ten.1, uc002teo.1, uc002tep.1, uc010fjm.1_5end |
EntrezGene: | CCDC138 |
HGNC: | 26531 |
UniProt: | Q96M89F8WF51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.51e-09 | 53 |
common lymphoid progenitor | 3.51e-09 | 53 |
lymphoid lineage restricted progenitor cell | 8.98e-09 | 52 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.65e-10 | 89 |
central nervous system | 1.73e-08 | 81 |
organ system subdivision | 1.41e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.20e-50 | 235 |
disease of cellular proliferation | 5.68e-47 | 239 |
cell type cancer | 8.86e-28 | 143 |
carcinoma | 1.03e-24 | 106 |
organ system cancer | 1.93e-23 | 137 |
hematologic cancer | 9.68e-18 | 51 |
immune system cancer | 9.68e-18 | 51 |
leukemia | 1.09e-13 | 39 |
myeloid leukemia | 9.19e-11 | 31 |
germ cell and embryonal cancer | 7.78e-07 | 22 |
germ cell cancer | 7.78e-07 | 22 |
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