FFCP PHASE1:Hg19::chr20:33543546..33543621,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2937 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4624 | |||
|TSSclassifier=S | |||
|UniProt=P48637 | |||
|association_with_transcript=0bp_to_ENST00000216951,NM_000178,uc002xbg.2,uc002xbh.2,uc010gez.1,uc010zup.1_5end | |||
|description=CAGE_peak_1_at_GSS_5end | |||
|id=chr20:33543546..33543621,- | |||
|ontology_enrichment_celltype=CL:0000066!2.68e-30!254;CL:0000220!3.64e-29!246;CL:0002321!9.14e-29!248;CL:0000548!5.16e-26!679;CL:0000004!5.16e-26!679;CL:0000255!5.16e-26!679;CL:0000012!2.08e-25!682;CL:0000144!8.54e-15!625;CL:0000055!5.36e-14!180;CL:0000003!7.62e-14!722;CL:0002371!1.26e-13!591;CL:0000223!3.28e-12!59;CL:0002076!1.70e-11!43;CL:0000222!2.35e-11!119;CL:0000192!4.47e-10!42;CL:0000514!4.47e-10!42;CL:0000183!5.06e-10!59;CL:0000063!1.74e-09!578;CL:0000359!9.69e-09!32;CL:0000680!2.73e-08!57;CL:0000056!2.73e-08!57;CL:0000355!2.73e-08!57;CL:0000187!3.53e-08!54;CL:0002368!2.07e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.92e-09;42!CL:0000359;2.42e-08;32!CL:0002368;2.13e-07;13!CL:0000192;3.71e-07;43!CL:1000449;5.52e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.13e-30,253;CL:0002321,8.57e-29,250;CL:0000223,3.23e-12,58;CL:0002076,1.56e-11,42;CL:0000222,2.41e-11,121;CL:0000192,1.53e-09,43;CL:0000514,1.53e-09,43;CL:0000359,9.69e-09,32;CL:0000680,6.50e-08,58;CL:0000056,6.50e-08,58;CL:0000355,6.50e-08,58;CL:0000187,8.58e-08,55;CL:0002368,2.07e-07,13;CL:1000449,5.86e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;3.71e-07;43!CL:0000223;5.98e-07;58 | |||
|ontology_enrichment_disease=DOID:14566!1.34e-11!239;DOID:162!1.49e-10!235;DOID:0050687!2.34e-09!143;DOID:305!3.86e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.34e-11,239;DOID:162,1.49e-10,235;DOID:0050687,2.34e-09,143;DOID:305,3.86e-08,106 | |||
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| |||
|short_description=p1@GSS | |||
}} |
Revision as of 08:10, 12 September 2013
Short description: | p1@GSS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GSS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000216951, NM_000178, uc002xbg.2, uc002xbh.2, uc010gez.1, uc010zup.1_5end |
EntrezGene: | GSS |
HGNC: | 4624 |
UniProt: | P48637 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.13e-30 | 253 |
embryonic cell | 8.57e-29 | 250 |
endodermal cell | 3.23e-12 | 58 |
endo-epithelial cell | 1.56e-11 | 42 |
mesodermal cell | 2.41e-11 | 121 |
smooth muscle cell | 1.53e-09 | 43 |
smooth muscle myoblast | 1.53e-09 | 43 |
vascular associated smooth muscle cell | 9.69e-09 | 32 |
muscle precursor cell | 6.50e-08 | 58 |
myoblast | 6.50e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.50e-08 | 58 |
muscle cell | 8.58e-08 | 55 |
respiratory epithelial cell | 2.07e-07 | 13 |
epithelial cell of nephron | 5.86e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.26e-13 | 199 |
unilaminar epithelium | 3.40e-11 | 148 |
mesenchyme | 4.02e-10 | 160 |
entire embryonic mesenchyme | 4.02e-10 | 160 |
multilaminar epithelium | 8.18e-10 | 83 |
epithelial tube | 9.34e-10 | 117 |
trunk mesenchyme | 1.13e-09 | 122 |
epithelial vesicle | 2.03e-09 | 78 |
urinary system structure | 1.20e-08 | 47 |
renal system | 6.63e-08 | 48 |
cell layer | 1.42e-07 | 309 |
artery | 1.47e-07 | 42 |
arterial blood vessel | 1.47e-07 | 42 |
arterial system | 1.47e-07 | 42 |
vasculature | 1.63e-07 | 78 |
vascular system | 1.63e-07 | 78 |
epithelium | 2.41e-07 | 306 |
somite | 2.81e-07 | 71 |
presomitic mesoderm | 2.81e-07 | 71 |
presumptive segmental plate | 2.81e-07 | 71 |
dermomyotome | 2.81e-07 | 71 |
trunk paraxial mesoderm | 2.81e-07 | 71 |
paraxial mesoderm | 5.48e-07 | 72 |
presumptive paraxial mesoderm | 5.48e-07 | 72 |
nephron epithelium | 5.86e-07 | 15 |
renal tubule | 5.86e-07 | 15 |
nephron tubule | 5.86e-07 | 15 |
nephron | 5.86e-07 | 15 |
uriniferous tubule | 5.86e-07 | 15 |
nephrogenic mesenchyme | 5.86e-07 | 15 |
parenchyma | 5.92e-07 | 15 |
dense mesenchyme tissue | 6.80e-07 | 73 |
excretory tube | 7.48e-07 | 16 |
kidney epithelium | 7.48e-07 | 16 |
trunk region element | 7.79e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.34e-11 | 239 |
cancer | 1.49e-10 | 235 |
cell type cancer | 2.34e-09 | 143 |
carcinoma | 3.86e-08 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.