FFCP PHASE1:Hg19::chr20:22565185..22565223,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3170|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5022|TSSclassifier=S|UniProt=Q9Y261,B0ZTD4|association_with_transcript=-84bp_to_ENST00000319993,ENST00000419308,NM_021784,uc002wsm.2_5end|description=CAGE_peak_3_at_FOXA2_5end|id=chr20:22565185..22565223,-|ontology_enrichment_celltype=CL:0000223!3.35e-24!59;CL:0002076!1.92e-22!43;CL:0000066!6.10e-20!254;CL:0002368!9.32e-16!13;CL:0002202!1.40e-10!9;CL:0002632!1.40e-10!9;CL:0000082!3.06e-10!19;CL:0002251!1.51e-07!21;CL:0002159!5.11e-07!13|ontology_enrichment_celltype_v019=CL:0002368;1.27e-27;13!CL:0002202;2.77e-18;9!CL:0002632;2.77e-18;9!CL:0002076;5.78e-16;42!CL:0000082;4.24e-12;19!CL:0000307;5.01e-09;3!CL:0002328;5.72e-09;3|ontology_enrichment_celltype_v019_2=CL:0002368,8.57e-28,13;CL:0000223,9.99e-21,58;CL:0002076,1.04e-19,42;CL:0002202,2.37e-18,9;CL:0002632,2.37e-18,9;CL:0000066,3.58e-17,253;CL:0000082,4.76e-12,19;CL:0000068,4.57e-09,3;CL:0000069,4.57e-09,3;CL:0000307,4.57e-09,3;CL:0000377,4.57e-09,3;CL:0002328,5.37e-09,3|ontology_enrichment_development_v019=UBERON:0001041;6.19e-20;30!UBERON:0009497;2.84e-13;13!CL:0000223;2.71e-12;58!UBERON:0004161;1.45e-09;11!CL:0000377;5.01e-09;3|ontology_enrichment_disease=DOID:305!9.33e-15!106;DOID:0050687!2.41e-11!143;DOID:162!1.04e-08!235;DOID:14566!1.33e-08!239;DOID:1749!3.22e-07!14;DOID:0050615!4.49e-07!16|ontology_enrichment_disease_v019=DOID:0050615;3.35e-07;16|ontology_enrichment_disease_v019_2=DOID:305,3.10e-09,106;DOID:0050687,2.87e-07,143;DOID:0050615,3.75e-07,16|ontology_enrichment_uberon=UBERON:0004119!5.14e-21!169;UBERON:0000925!5.14e-21!169;UBERON:0006595!5.14e-21!169;UBERON:0001007!1.52e-20!155;UBERON:0001555!1.52e-20!155;UBERON:0007026!1.52e-20!155;UBERON:0005911!1.06e-17!82;UBERON:0005153!4.83e-17!37;UBERON:0004921!3.02e-16!129;UBERON:0004185!3.02e-16!129;UBERON:0005178!3.47e-15!34;UBERON:0002224!3.47e-15!34;UBERON:0005181!1.52e-14!35;UBERON:0000077!6.54e-14!130;UBERON:0002048!1.64e-13!22;UBERON:0000117!1.64e-13!22;UBERON:0000171!1.64e-13!22;UBERON:0000170!1.64e-13!22;UBERON:0005597!1.64e-13!22;UBERON:0000118!1.64e-13!22;UBERON:0000466!2.87e-13!126;UBERON:0001004!7.64e-13!72;UBERON:0005157!1.22e-12!51;UBERON:0005177!1.26e-12!107;UBERON:0000065!1.70e-12!53;UBERON:0001041!4.58e-12!98;UBERON:0008947!2.21e-11!38;UBERON:0003258!2.21e-11!38;UBERON:0004802!3.06e-10!19;UBERON:0000115!3.06e-10!19;UBERON:0000464!4.14e-10!104;UBERON:0004807!4.66e-09!28;UBERON:0007196!4.89e-09!14;UBERON:0001558!4.89e-09!14;UBERON:0003929!1.06e-08!54;UBERON:0000344!1.16e-08!12;UBERON:0001048!3.65e-08!168;UBERON:0000915!1.31e-07!52;UBERON:0009569!2.05e-07!113;UBERON:0000072!4.42e-07!46;UBERON:0003100!6.50e-07!41|ontology_enrichment_uberon_v019=UBERON:0002048;1.92e-17;22!UBERON:0000117;1.92e-17;22!UBERON:0000171;1.92e-17;22!UBERON:0000170;1.92e-17;22!UBERON:0005178;7.24e-16;34!UBERON:0002224;7.24e-16;34!UBERON:0005181;7.91e-16;35!UBERON:0000065;1.50e-13;44!UBERON:0004807;2.81e-12;22!UBERON:0004802;4.24e-12;19!UBERON:0000115;4.24e-12;19!UBERON:0007196;2.44e-10;15!UBERON:0001558;2.44e-10;15!UBERON:0004815;5.72e-09;3!UBERON:0002031;5.72e-09;3!UBERON:0000072;1.00e-07;37!UBERON:0005911;1.94e-07;36!UBERON:0000915;3.61e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0005178,2.01e-18,34;UBERON:0002224,2.01e-18,34;UBERON:0005153,3.29e-18,37;UBERON:0005181,9.17e-18,35;UBERON:0002048,2.12e-17,22;UBERON:0000117,2.12e-17,22;UBERON:0000171,2.12e-17,22;UBERON:0000170,2.12e-17,22;UBERON:0005597,2.12e-17,22;UBERON:0000118,2.12e-17,22;UBERON:0005157,5.93e-17,47;UBERON:0000065,4.43e-16,54;UBERON:0001041,2.38e-15,87;UBERON:0004119,1.31e-14,160;UBERON:0000925,1.31e-14,160;UBERON:0006595,1.31e-14,160;UBERON:0004921,3.00e-14,118;UBERON:0008947,5.73e-14,38;UBERON:0003258,5.73e-14,38;UBERON:0005911,1.03e-13,82;UBERON:0001007,8.89e-13,145;UBERON:0001555,8.89e-13,145;UBERON:0007026,8.89e-13,145;UBERON:0001004,9.85e-13,74;UBERON:0004802,4.76e-12,19;UBERON:0000115,4.76e-12,19;UBERON:0005177,3.63e-11,101;UBERON:0000915,1.70e-10,52;UBERON:0007196,2.23e-10,15;UBERON:0001558,2.23e-10,15;UBERON:0004807,4.55e-09,28;UBERON:0004815,5.37e-09,3;UBERON:0002031,5.37e-09,3;UBERON:0001048,1.61e-08,160;UBERON:0009569,9.26e-08,112;UBERON:0000072,1.01e-07,47;UBERON:0007499,1.18e-07,25;UBERON:0009856,2.74e-07,26|phase1_expression=0,0,0,0,0,0,0,0,0,3.44027511102112,35.5878595665938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,6.32532429434325,25.1432726913416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589405839739707,9.10738220731355,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23312862571041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,2.18196896472668,0.286804595389004,0,0,0.348581828608555,0.414644220061482,0.756962552626885,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0.658501712451753,25.8524032492525,0.201057944823262,3.24059558054854,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,0,0.567100388969546,1.70161193135412,6.39394664730716,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0.846016147141356,0.200506470303285,2.4861867012692,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,1.854738209659,5.4941678891006,6.35323149388527,0,1.30012049207304,0,0,0,0,0,0,0,0,0,8.76010051413184,4.22818148203234,1.78657797492418,12.138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,13.9522063451992,2.68120910214315,10.8890984861323,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766021480529467,0,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,3.69262196843137,0,0,0,0.935702702041099,0,0,0,0,0,0,0,0,0,0.222617410045812,0,5.06700979507184,0.398495976502139,0.276283915531148,7.05411693991973,0,0.369254416383208,0,5.75157447342892,1.61119057208048,0,0,0,0,0,0,0,0,0,0,1.137934482855,3.30529745380596,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0,1.07730361905316,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0.167821586975843,0,0,0,0.163232808159148,1.41353071433941,0,0.995261931078505,0.353830258013357,1.22206028986725,0,0,0,0,0,0,0,0.19566461893209,0,0,2.41981432097328,0,0,0.150323419414493,0.622129148383483,1.32930774541437,0.330991955875499,0.941798755221676,0,0,0,0.173559738335131,0.195984794828755,0,0,0,0,0,0,0,3.35373281427701,0,0,0,0,0,0.64127056201227,1.70762395791482,0,4.03453168031497,0,11.1536748610277,0,0,0,0.135904206073614,0.836822770498666,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,1.02418136999391,1.40106959247983,1.01105315781277,3.05125192695721,0,0,0,0.482259445395058,0,0,0,0,0,0,0,0,0,0,1.15149118391667,0,0,0,0,0,0.326587360109409,0,3.11951578847488,0,0,1.17241786942466,0,0,0,2.05304205461195,0,3.52398461473392,5.81655928868764,2.07119527673598,0,0,0,0,0,0,0,0,5.81100156125867,0,0,0,0,0,0.18628920882415,0,4.49929468663584,0,0,5.17584803335978,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.776314784381297,0,0,0,0.150257608997218,0,0,0,1.07410557042488,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,1.28120759293973,0,0,0,0,0,0,0.327609848846413,0,5.91673945404156,0,0,0,0,0.368211900503681,6.71421637053334,6.22077260032973,0,0,0,0,0,0,0,0,0,0,10.4074197277111,0.352675943690684,0,0,0,0,0,0,0,0,0,0.196295437002051,0.471878893390961,0.366857197043358,1.27078232765372,0,4.8325194824207,1.98916222116275,0.0752103283492573,0.80682027481408,1.56302802246618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.857440047187092,0.0679697329768317,0,0,4.22679327189863,0.078493092850514,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0.955538938977433,0.335566295393377,1.66855397145913,0.365753774946808,0,0,0,0,40.7054666424064,3.97901550322736,0,5.19551977379216,0.219881033490858,9.51065914470043,0,0.218559560503957,14.5798361872072,0,4.94920748913415,0,0,0,0,0,0,0,0,2.47026410200984,0.561689566824178,0,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0,0,0,0.426467963801962,0.23806443146374,0,0,0,0.445530107947154,0.202117188958219,0,0,0.336760265072938,0.78894425931944,0.332660356546013,0.488419611665847,0,0,0,0,0.122241444182866,0,0,0,0|short_description=p3@FOXA2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3170 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5022 | |||
|TSSclassifier=S | |||
|UniProt=Q9Y261,B0ZTD4 | |||
|association_with_transcript=-84bp_to_ENST00000319993,ENST00000419308,NM_021784,uc002wsm.2_5end | |||
|description=CAGE_peak_3_at_FOXA2_5end | |||
|id=chr20:22565185..22565223,- | |||
|ontology_enrichment_celltype=CL:0000223!3.35e-24!59;CL:0002076!1.92e-22!43;CL:0000066!6.10e-20!254;CL:0002368!9.32e-16!13;CL:0002202!1.40e-10!9;CL:0002632!1.40e-10!9;CL:0000082!3.06e-10!19;CL:0002251!1.51e-07!21;CL:0002159!5.11e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.27e-27;13!CL:0002202;2.77e-18;9!CL:0002632;2.77e-18;9!CL:0002076;5.78e-16;42!CL:0000082;4.24e-12;19!CL:0000307;5.01e-09;3!CL:0002328;5.72e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,8.57e-28,13;CL:0000223,9.99e-21,58;CL:0002076,1.04e-19,42;CL:0002202,2.37e-18,9;CL:0002632,2.37e-18,9;CL:0000066,3.58e-17,253;CL:0000082,4.76e-12,19;CL:0000068,4.57e-09,3;CL:0000069,4.57e-09,3;CL:0000307,4.57e-09,3;CL:0000377,4.57e-09,3;CL:0002328,5.37e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0001041;6.19e-20;30!UBERON:0009497;2.84e-13;13!CL:0000223;2.71e-12;58!UBERON:0004161;1.45e-09;11!CL:0000377;5.01e-09;3 | |||
|ontology_enrichment_disease=DOID:305!9.33e-15!106;DOID:0050687!2.41e-11!143;DOID:162!1.04e-08!235;DOID:14566!1.33e-08!239;DOID:1749!3.22e-07!14;DOID:0050615!4.49e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:0050615;3.35e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.10e-09,106;DOID:0050687,2.87e-07,143;DOID:0050615,3.75e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.14e-21!169;UBERON:0000925!5.14e-21!169;UBERON:0006595!5.14e-21!169;UBERON:0001007!1.52e-20!155;UBERON:0001555!1.52e-20!155;UBERON:0007026!1.52e-20!155;UBERON:0005911!1.06e-17!82;UBERON:0005153!4.83e-17!37;UBERON:0004921!3.02e-16!129;UBERON:0004185!3.02e-16!129;UBERON:0005178!3.47e-15!34;UBERON:0002224!3.47e-15!34;UBERON:0005181!1.52e-14!35;UBERON:0000077!6.54e-14!130;UBERON:0002048!1.64e-13!22;UBERON:0000117!1.64e-13!22;UBERON:0000171!1.64e-13!22;UBERON:0000170!1.64e-13!22;UBERON:0005597!1.64e-13!22;UBERON:0000118!1.64e-13!22;UBERON:0000466!2.87e-13!126;UBERON:0001004!7.64e-13!72;UBERON:0005157!1.22e-12!51;UBERON:0005177!1.26e-12!107;UBERON:0000065!1.70e-12!53;UBERON:0001041!4.58e-12!98;UBERON:0008947!2.21e-11!38;UBERON:0003258!2.21e-11!38;UBERON:0004802!3.06e-10!19;UBERON:0000115!3.06e-10!19;UBERON:0000464!4.14e-10!104;UBERON:0004807!4.66e-09!28;UBERON:0007196!4.89e-09!14;UBERON:0001558!4.89e-09!14;UBERON:0003929!1.06e-08!54;UBERON:0000344!1.16e-08!12;UBERON:0001048!3.65e-08!168;UBERON:0000915!1.31e-07!52;UBERON:0009569!2.05e-07!113;UBERON:0000072!4.42e-07!46;UBERON:0003100!6.50e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;1.92e-17;22!UBERON:0000117;1.92e-17;22!UBERON:0000171;1.92e-17;22!UBERON:0000170;1.92e-17;22!UBERON:0005178;7.24e-16;34!UBERON:0002224;7.24e-16;34!UBERON:0005181;7.91e-16;35!UBERON:0000065;1.50e-13;44!UBERON:0004807;2.81e-12;22!UBERON:0004802;4.24e-12;19!UBERON:0000115;4.24e-12;19!UBERON:0007196;2.44e-10;15!UBERON:0001558;2.44e-10;15!UBERON:0004815;5.72e-09;3!UBERON:0002031;5.72e-09;3!UBERON:0000072;1.00e-07;37!UBERON:0005911;1.94e-07;36!UBERON:0000915;3.61e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005178,2.01e-18,34;UBERON:0002224,2.01e-18,34;UBERON:0005153,3.29e-18,37;UBERON:0005181,9.17e-18,35;UBERON:0002048,2.12e-17,22;UBERON:0000117,2.12e-17,22;UBERON:0000171,2.12e-17,22;UBERON:0000170,2.12e-17,22;UBERON:0005597,2.12e-17,22;UBERON:0000118,2.12e-17,22;UBERON:0005157,5.93e-17,47;UBERON:0000065,4.43e-16,54;UBERON:0001041,2.38e-15,87;UBERON:0004119,1.31e-14,160;UBERON:0000925,1.31e-14,160;UBERON:0006595,1.31e-14,160;UBERON:0004921,3.00e-14,118;UBERON:0008947,5.73e-14,38;UBERON:0003258,5.73e-14,38;UBERON:0005911,1.03e-13,82;UBERON:0001007,8.89e-13,145;UBERON:0001555,8.89e-13,145;UBERON:0007026,8.89e-13,145;UBERON:0001004,9.85e-13,74;UBERON:0004802,4.76e-12,19;UBERON:0000115,4.76e-12,19;UBERON:0005177,3.63e-11,101;UBERON:0000915,1.70e-10,52;UBERON:0007196,2.23e-10,15;UBERON:0001558,2.23e-10,15;UBERON:0004807,4.55e-09,28;UBERON:0004815,5.37e-09,3;UBERON:0002031,5.37e-09,3;UBERON:0001048,1.61e-08,160;UBERON:0009569,9.26e-08,112;UBERON:0000072,1.01e-07,47;UBERON:0007499,1.18e-07,25;UBERON:0009856,2.74e-07,26 | |||
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|short_description=p3@FOXA2 | |||
}} |
Revision as of 07:46, 12 September 2013
Short description: | p3@FOXA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_FOXA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -84bp_to_ENST00000319993, ENST00000419308, NM_021784, uc002wsm.2_5end |
EntrezGene: | FOXA2 |
HGNC: | 5022 |
UniProt: | Q9Y261B0ZTD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 8.57e-28 | 13 |
endodermal cell | 9.99e-21 | 58 |
endo-epithelial cell | 1.04e-19 | 42 |
epithelial cell of tracheobronchial tree | 2.37e-18 | 9 |
epithelial cell of lower respiratory tract | 2.37e-18 | 9 |
epithelial cell | 3.58e-17 | 253 |
epithelial cell of lung | 4.76e-12 | 19 |
duct epithelial cell | 4.57e-09 | 3 |
branched duct epithelial cell | 4.57e-09 | 3 |
tracheal epithelial cell | 4.57e-09 | 3 |
tracheoblast | 4.57e-09 | 3 |
bronchial epithelial cell | 5.37e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.10e-09 | 106 |
cell type cancer | 2.87e-07 | 143 |
respiratory system cancer | 3.75e-07 | 16 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.