FFCP PHASE1:Hg19::chr1:85062226..85062238,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C41|description=CAGE_peak_at_chr1:85062226..85062238,-|id=chr1:85062226..85062238,-|ontology_enrichment_celltype=CL:0002586!2.31e-12!3;CL:0000149!1.32e-09!4|ontology_enrichment_celltype_v019=CL:0002586;4.09e-23;3!CL:0000149;1.03e-17;4|ontology_enrichment_celltype_v019_2=CL:0002586,4.09e-23,3;CL:0000149,1.03e-17,4|ontology_enrichment_development_v019=UBERON:0003056;2.62e-23;3|ontology_enrichment_disease=DOID:5409!1.57e-09!4|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000966!1.82e-27!5;UBERON:0005388!1.82e-27!5;UBERON:0001802!1.82e-27!5;UBERON:0001905!9.07e-18!2;UBERON:0002757!9.07e-18!2;UBERON:0010134!9.07e-18!2;UBERON:0002784!9.07e-18!2;UBERON:0005408!9.07e-18!2;UBERON:0001899!9.07e-18!2;UBERON:0000970!1.06e-15!20;UBERON:0002104!5.40e-15!21;UBERON:0000020!9.23e-14!23;UBERON:0001032!3.20e-13!24;UBERON:0004456!3.20e-13!24;UBERON:0001781!2.31e-12!3;UBERON:0001782!2.31e-12!3;UBERON:0005424!2.31e-12!3;UBERON:0003296!1.44e-09!4;UBERON:0010133!1.44e-09!4;UBERON:0000019!5.35e-08!19;UBERON:0000047!5.35e-08!19;UBERON:0004088!5.35e-08!19;UBERON:0003072!5.35e-08!19;UBERON:0003071!5.35e-08!19;UBERON:0004128!5.35e-08!19;UBERON:0001456!2.52e-07!21|ontology_enrichment_uberon_v019=UBERON:0000966;2.87e-53;5!UBERON:0005388;2.87e-53;5!UBERON:0001802;2.87e-53;5!UBERON:0000970;1.56e-30;20!UBERON:0002104;3.84e-29;21!UBERON:0000020;1.01e-26;23!UBERON:0001032;1.16e-25;24!UBERON:0004456;1.16e-25;24!UBERON:0001781;4.09e-23;3!UBERON:0001782;4.09e-23;3!UBERON:0000019;5.27e-15;19!UBERON:0000047;5.27e-15;19!UBERON:0004088;5.27e-15;19!UBERON:0010230;5.27e-15;19!UBERON:0001456;1.09e-13;21!UBERON:0007625;2.63e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.22e-44,6;UBERON:0005388,1.22e-44,6;UBERON:0001802,1.22e-44,6;UBERON:0000970,3.84e-29,21;UBERON:0002104,3.84e-29,21;UBERON:0000020,1.16e-25,24;UBERON:0001032,1.16e-25,24;UBERON:0004456,1.16e-25,24;UBERON:0001782,4.09e-23,3;UBERON:0005424,4.09e-23,3;UBERON:0001781,1.03e-17,4;UBERON:0000019,2.58e-14,20;UBERON:0000047,2.58e-14,20;UBERON:0010312,2.58e-14,20;UBERON:0004088,2.58e-14,20;UBERON:0010230,2.58e-14,20;UBERON:0003072,2.58e-14,20;UBERON:0004128,2.58e-14,20;UBERON:0003071,2.58e-14,20;UBERON:0001456,4.01e-13,22;UBERON:0005085,1.20e-09,31;UBERON:0007625,2.63e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61569185248852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.723496481918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:85062226..85062238,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_at_chr1:85062226..85062238,- | |||
|id=chr1:85062226..85062238,- | |||
|ontology_enrichment_celltype=CL:0002586!2.31e-12!3;CL:0000149!1.32e-09!4 | |||
|ontology_enrichment_celltype_v019=CL:0002586;4.09e-23;3!CL:0000149;1.03e-17;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,4.09e-23,3;CL:0000149,1.03e-17,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.62e-23;3 | |||
|ontology_enrichment_disease=DOID:5409!1.57e-09!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!1.82e-27!5;UBERON:0005388!1.82e-27!5;UBERON:0001802!1.82e-27!5;UBERON:0001905!9.07e-18!2;UBERON:0002757!9.07e-18!2;UBERON:0010134!9.07e-18!2;UBERON:0002784!9.07e-18!2;UBERON:0005408!9.07e-18!2;UBERON:0001899!9.07e-18!2;UBERON:0000970!1.06e-15!20;UBERON:0002104!5.40e-15!21;UBERON:0000020!9.23e-14!23;UBERON:0001032!3.20e-13!24;UBERON:0004456!3.20e-13!24;UBERON:0001781!2.31e-12!3;UBERON:0001782!2.31e-12!3;UBERON:0005424!2.31e-12!3;UBERON:0003296!1.44e-09!4;UBERON:0010133!1.44e-09!4;UBERON:0000019!5.35e-08!19;UBERON:0000047!5.35e-08!19;UBERON:0004088!5.35e-08!19;UBERON:0003072!5.35e-08!19;UBERON:0003071!5.35e-08!19;UBERON:0004128!5.35e-08!19;UBERON:0001456!2.52e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.87e-53;5!UBERON:0005388;2.87e-53;5!UBERON:0001802;2.87e-53;5!UBERON:0000970;1.56e-30;20!UBERON:0002104;3.84e-29;21!UBERON:0000020;1.01e-26;23!UBERON:0001032;1.16e-25;24!UBERON:0004456;1.16e-25;24!UBERON:0001781;4.09e-23;3!UBERON:0001782;4.09e-23;3!UBERON:0000019;5.27e-15;19!UBERON:0000047;5.27e-15;19!UBERON:0004088;5.27e-15;19!UBERON:0010230;5.27e-15;19!UBERON:0001456;1.09e-13;21!UBERON:0007625;2.63e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.22e-44,6;UBERON:0005388,1.22e-44,6;UBERON:0001802,1.22e-44,6;UBERON:0000970,3.84e-29,21;UBERON:0002104,3.84e-29,21;UBERON:0000020,1.16e-25,24;UBERON:0001032,1.16e-25,24;UBERON:0004456,1.16e-25,24;UBERON:0001782,4.09e-23,3;UBERON:0005424,4.09e-23,3;UBERON:0001781,1.03e-17,4;UBERON:0000019,2.58e-14,20;UBERON:0000047,2.58e-14,20;UBERON:0010312,2.58e-14,20;UBERON:0004088,2.58e-14,20;UBERON:0010230,2.58e-14,20;UBERON:0003072,2.58e-14,20;UBERON:0004128,2.58e-14,20;UBERON:0003071,2.58e-14,20;UBERON:0001456,4.01e-13,22;UBERON:0005085,1.20e-09,31;UBERON:0007625,2.63e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61569185248852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.723496481918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:85062226..85062238,- | |||
}} |
Revision as of 06:56, 12 September 2013
Short description: | p@chr1:85062226..85062238, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:85062226..85062238, - |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 4.09e-23 | 3 |
visual pigment cell | 1.03e-17 | 4 |
Ontology term | p-value | n |
---|---|---|
retina | 1.22e-44 | 6 |
photoreceptor array | 1.22e-44 | 6 |
posterior segment of eyeball | 1.22e-44 | 6 |
eye | 3.84e-29 | 21 |
visual system | 3.84e-29 | 21 |
sense organ | 1.16e-25 | 24 |
sensory system | 1.16e-25 | 24 |
entire sense organ system | 1.16e-25 | 24 |
pigmented layer of retina | 4.09e-23 | 3 |
presumptive retinal pigmented epithelium | 4.09e-23 | 3 |
layer of retina | 1.03e-17 | 4 |
camera-type eye | 2.58e-14 | 20 |
simple eye | 2.58e-14 | 20 |
immature eye | 2.58e-14 | 20 |
ocular region | 2.58e-14 | 20 |
eyeball of camera-type eye | 2.58e-14 | 20 |
optic cup | 2.58e-14 | 20 |
optic vesicle | 2.58e-14 | 20 |
eye primordium | 2.58e-14 | 20 |
face | 4.01e-13 | 22 |
ectodermal placode | 1.20e-09 | 31 |
pigment epithelium of eye | 2.63e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.