FFCP PHASE1:Hg19::chr1:34630820..34630844,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=114784 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19290 | |||
|TSSclassifier=S | |||
|UniProt=E7EUA6,Q53TY4 | |||
|association_with_transcript=30bp_to_ENST00000373381,uc001bxm.1_5end | |||
|coexpression_cluster_id=C1856 | |||
|description=CAGE_peak_1_at_CSMD2_5end | |||
|id=chr1:34630820..34630844,- | |||
|ontology_enrichment_celltype=CL:0000055!7.04e-23!180;CL:0000057!1.89e-11!75;CL:0000393!1.12e-10!60;CL:0000211!1.12e-10!60;CL:0002620!4.69e-10!23;CL:0000359!6.42e-09!32;CL:0000680!3.02e-08!57;CL:0000056!3.02e-08!57;CL:0000355!3.02e-08!57;CL:0000187!4.86e-08!54;CL:0000192!6.01e-08!42;CL:0000514!6.01e-08!42;CL:0000183!2.13e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.81e-11;23!CL:0000359;1.05e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,3.71e-11,23;CL:0000057,6.40e-11,76;CL:0000359,4.20e-09,32;CL:0000393,3.56e-08,61;CL:0000211,3.56e-08,61;CL:0000047,3.24e-07,8;CL:0000133,3.91e-07,59;CL:0000192,6.71e-07,43;CL:0000514,6.71e-07,43 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.50e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.19e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.64e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.85e-34!82;UBERON:0005743!6.45e-34!86;UBERON:0000073!1.05e-31!94;UBERON:0001016!1.05e-31!94;UBERON:0001049!1.89e-31!57;UBERON:0005068!1.89e-31!57;UBERON:0006241!1.89e-31!57;UBERON:0007135!1.89e-31!57;UBERON:0002616!5.44e-27!59;UBERON:0002346!6.95e-27!90;UBERON:0000955!9.85e-27!69;UBERON:0006238!9.85e-27!69;UBERON:0003075!1.16e-26!86;UBERON:0007284!1.16e-26!86;UBERON:0000475!6.19e-26!365;UBERON:0002780!2.38e-24!41;UBERON:0001890!2.38e-24!41;UBERON:0006240!2.38e-24!41;UBERON:0000924!7.89e-24!173;UBERON:0006601!7.89e-24!173;UBERON:0004121!2.39e-23!169;UBERON:0002020!2.98e-23!34;UBERON:0003528!2.98e-23!34;UBERON:0003080!3.20e-23!42;UBERON:0001893!4.14e-23!34;UBERON:0002791!1.82e-22!33;UBERON:0001869!4.35e-22!32;UBERON:0003056!1.81e-18!61;UBERON:0000033!6.90e-18!123;UBERON:0000956!1.58e-17!25;UBERON:0000203!1.58e-17!25;UBERON:0000119!5.27e-17!312;UBERON:0000153!8.71e-17!129;UBERON:0007811!8.71e-17!129;UBERON:0000483!1.17e-16!309;UBERON:0002619!3.05e-16!22;UBERON:0000025!3.14e-16!194;UBERON:0001950!6.77e-15!20;UBERON:0007023!2.02e-14!115;UBERON:0004111!6.98e-14!241;UBERON:0000468!2.96e-13!659;UBERON:0002199!5.93e-12!45;UBERON:0002416!5.93e-12!45;UBERON:0000477!1.41e-11!286;UBERON:0004290!5.85e-11!70;UBERON:0000467!1.15e-10!625;UBERON:0000480!1.71e-10!626;UBERON:0002097!2.26e-10!40;UBERON:0000486!8.47e-10!82;UBERON:0000914!9.04e-10!83;UBERON:0002329!9.04e-10!83;UBERON:0003077!9.04e-10!83;UBERON:0003059!9.04e-10!83;UBERON:0007282!9.04e-10!83;UBERON:0009618!9.04e-10!83;UBERON:0007285!9.04e-10!83;UBERON:0004573!1.93e-09!33;UBERON:0004571!1.93e-09!33;UBERON:0000064!2.01e-09!219;UBERON:0003076!2.67e-09!15;UBERON:0003057!2.67e-09!15;UBERON:0001637!2.72e-09!42;UBERON:0003509!2.72e-09!42;UBERON:0004572!2.72e-09!42;UBERON:0000481!1.19e-08!347;UBERON:0000922!5.74e-08!612;UBERON:0001134!6.28e-08!61;UBERON:0002036!6.28e-08!61;UBERON:0003082!6.28e-08!61;UBERON:0004732!6.63e-08!13;UBERON:0002385!1.65e-07!63;UBERON:0001015!1.65e-07!63;UBERON:0000383!1.65e-07!63;UBERON:0004733!2.37e-07!12;UBERON:0002028!2.37e-07!12;UBERON:0007277!2.37e-07!12;UBERON:0002308!3.62e-07!9;UBERON:0000125!3.62e-07!9;UBERON:0002420!4.92e-07!9;UBERON:0007245!4.92e-07!9;UBERON:0010009!4.92e-07!9;UBERON:0010011!4.92e-07!9;UBERON:0000454!4.92e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.54e-23;32!UBERON:0003528;1.69e-23;34!UBERON:0002020;1.69e-23;34!UBERON:0001893;2.05e-23;34!UBERON:0002791;2.47e-23;32!UBERON:0002780;8.67e-21;41!UBERON:0001890;8.67e-21;41!UBERON:0000956;1.70e-20;25!UBERON:0000203;1.70e-20;25!UBERON:0000073;3.30e-20;53!UBERON:0002616;3.30e-20;53!UBERON:0002619;5.52e-19;22!UBERON:0001950;2.17e-17;20!UBERON:0000955;5.55e-14;68!UBERON:0001017;8.79e-14;75!UBERON:0001016;3.34e-13;83!UBERON:0004732;4.60e-09;13!UBERON:0002199;6.90e-09;46!UBERON:0002416;6.90e-09;46!UBERON:0002097;1.87e-08;41!UBERON:0004733;2.09e-08;12!UBERON:0002028;2.09e-08;12!UBERON:0000125;3.27e-08;9!UBERON:0002308;3.27e-08;9!UBERON:0002420;4.62e-08;9!UBERON:0007245;4.62e-08;9!UBERON:0010009;4.62e-08;9!UBERON:0010011;4.62e-08;9!UBERON:0000454;4.62e-08;9!UBERON:0003102;2.91e-07;50!UBERON:0010314;6.39e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.46e-40,81;UBERON:0001049,2.33e-38,56;UBERON:0005068,2.33e-38,56;UBERON:0006241,2.33e-38,56;UBERON:0007135,2.33e-38,56;UBERON:0001016,1.77e-37,89;UBERON:0000073,7.09e-36,53;UBERON:0002616,7.09e-36,53;UBERON:0003075,1.64e-31,82;UBERON:0007284,1.64e-31,82;UBERON:0000955,2.23e-31,68;UBERON:0006238,2.23e-31,68;UBERON:0002346,2.86e-31,86;UBERON:0010314,5.84e-29,132;UBERON:0002780,1.40e-28,41;UBERON:0001890,1.40e-28,41;UBERON:0003080,1.40e-28,41;UBERON:0006240,1.40e-28,41;UBERON:0003528,2.81e-27,34;UBERON:0002020,2.81e-27,34;UBERON:0001893,4.15e-27,34;UBERON:0010371,2.47e-26,104;UBERON:0001869,6.77e-26,32;UBERON:0002791,1.16e-25,32;UBERON:0004121,1.16e-22,171;UBERON:0000924,1.16e-22,171;UBERON:0006601,1.16e-22,171;UBERON:0003056,3.64e-22,61;UBERON:0000956,1.74e-20,25;UBERON:0000203,1.74e-20,25;UBERON:0002619,5.85e-19,22;UBERON:0001950,2.30e-17,20;UBERON:0000025,2.86e-16,192;UBERON:0002199,4.96e-13,46;UBERON:0002416,4.96e-13,46;UBERON:0000119,1.29e-12,309;UBERON:0000483,1.70e-12,306;UBERON:0002097,3.48e-11,41;UBERON:0007023,9.67e-11,114;UBERON:0003076,9.88e-11,15;UBERON:0003057,9.88e-11,15;UBERON:0004111,1.27e-10,240;UBERON:0004732,4.41e-09,13;UBERON:0004733,1.99e-08,12;UBERON:0002028,1.99e-08,12;UBERON:0007277,1.99e-08,12;UBERON:0003077,2.48e-08,72;UBERON:0007285,2.48e-08,72;UBERON:0000125,3.29e-08,9;UBERON:0002308,3.29e-08,9;UBERON:0002420,4.72e-08,9;UBERON:0007245,4.72e-08,9;UBERON:0010009,4.72e-08,9;UBERON:0010011,4.72e-08,9;UBERON:0000454,4.72e-08,9;UBERON:0007524,4.90e-08,73;UBERON:0002329,7.24e-08,71;UBERON:0003059,7.24e-08,71;UBERON:0007282,7.24e-08,71;UBERON:0004290,7.24e-08,71;UBERON:0009618,7.24e-08,71;UBERON:0001637,9.80e-08,42;UBERON:0003509,9.80e-08,42;UBERON:0004572,9.80e-08,42;UBERON:0004573,1.36e-07,33;UBERON:0004571,1.36e-07,33;UBERON:0011216,6.25e-07,223;UBERON:0000486,9.88e-07,83 | |||
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| |||
|short_description=p1@CSMD2 | |||
}} |
Revision as of 05:24, 12 September 2013
Short description: | p1@CSMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CSMD2_5end |
Coexpression cluster: | C1856_brain_parietal_temporal_occipital_duodenum_Fibroblast_neuroectodermal |
Association with transcript: | 30bp_to_ENST00000373381, uc001bxm.1_5end |
EntrezGene: | CSMD2 |
HGNC: | 19290 |
UniProt: | E7EUA6Q53TY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 3.71e-11 | 23 |
fibroblast | 6.40e-11 | 76 |
vascular associated smooth muscle cell | 4.20e-09 | 32 |
electrically responsive cell | 3.56e-08 | 61 |
electrically active cell | 3.56e-08 | 61 |
neuronal stem cell | 3.24e-07 | 8 |
neurectodermal cell | 3.91e-07 | 59 |
smooth muscle cell | 6.71e-07 | 43 |
smooth muscle myoblast | 6.71e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.64e-07 | 14 |
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