FFCP PHASE1:Hg19::chr1:33430403..33430421,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=127544|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26886|TSSclassifier=W|UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25|association_with_transcript=-117bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end|coexpression_cluster_id=C0|description=CAGE_peak_1_at_RNF19B_5end|id=chr1:33430403..33430421,-|ontology_enrichment_celltype=CL:0000738!5.46e-29!140;CL:0000766!4.39e-25!76;CL:0002057!4.79e-25!42;CL:0002087!5.45e-23!119;CL:0000860!1.36e-22!45;CL:0002009!3.81e-22!65;CL:0002031!1.16e-21!124;CL:0002194!1.92e-21!63;CL:0000576!1.92e-21!63;CL:0000040!1.92e-21!63;CL:0000559!1.92e-21!63;CL:0000557!4.57e-20!71;CL:0000839!4.05e-19!70;CL:0000037!8.61e-16!172;CL:0000566!8.61e-16!172;CL:0002032!7.93e-15!165;CL:0000837!7.93e-15!165;CL:0000988!1.14e-14!182;CL:0000763!1.44e-11!112;CL:0000049!1.44e-11!112|ontology_enrichment_celltype_v019=CL:0000860;6.92e-20;33!CL:0002057;6.92e-20;33!CL:0000473;7.07e-18;39!CL:0000234;7.07e-18;39!CL:0000576;4.13e-14;48!CL:0000766;8.14e-12;69!CL:0002087;9.51e-08;104!CL:0000738;1.41e-07;136|ontology_enrichment_celltype_v019_2=CL:0000738,1.49e-30,136;CL:0000766,2.25e-27,72;CL:0000473,1.51e-26,48;CL:0000234,1.51e-26,48;CL:0000860,4.79e-25,42;CL:0002057,4.79e-25,42;CL:0002009,1.61e-24,61;CL:0002087,1.71e-24,115;CL:0002194,8.13e-24,59;CL:0000576,8.13e-24,59;CL:0000040,8.13e-24,59;CL:0000559,8.13e-24,59;CL:0002031,4.82e-23,120;CL:0000557,4.30e-22,67;CL:0000839,4.32e-21,66;CL:0000037,1.17e-16,168;CL:0002032,1.11e-15,161;CL:0000837,1.11e-15,161;CL:0000988,4.13e-15,177;CL:0000763,1.67e-12,108;CL:0000049,1.67e-12,108|ontology_enrichment_development_v019=CL:0002057;1.93e-18;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!3.39e-20!112;UBERON:0002390!5.68e-20!102;UBERON:0003061!5.68e-20!102;UBERON:0002371!1.32e-15!80;UBERON:0002405!3.85e-13!115;UBERON:0001474!3.17e-12!86;UBERON:0003081!3.27e-12!216;UBERON:0004765!1.66e-08!101;UBERON:0001434!1.66e-08!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.29e-21,108;UBERON:0002390,1.75e-21,98;UBERON:0003061,1.75e-21,98;UBERON:0002405,3.50e-17,93;UBERON:0002371,4.09e-17,76;UBERON:0001474,2.10e-13,82;UBERON:0003081,1.50e-12,203;UBERON:0004765,1.92e-11,90;UBERON:0001434,2.59e-08,100|phase1_expression=2.18014055124668,3.21150785836475,0.845726424575827,5.00366491765652,2.68176656656373,2.61701557230111,5.06599756336621,4.42203911398782,3.13422753839806,6.14334841253772,17.4450291993107,3.9319446983431,5.53910654279752,3.58922423584135,13.9186897805725,11.4295274896802,10.8485015044316,8.03341099426111,7.80692478064811,2.83178433576612,9.18003110599138,4.38836610069323,2.86235987131057,5.61185142798825,3.89182182743889,11.0799438334529,13.3002954908912,12.3575926662476,85.7534123530611,39.9182574021101,100.940112402082,24.824373060931,24.09647350226,26.6222887320087,32.2263554414055,12.0843847614308,6.16560922603179,191.68241135203,283.36930427531,207.896414145786,13.2110129801555,13.9274276388161,17.2575630314905,149.033194749054,171.555678434719,181.695461829674,214.996859137758,205.172776122891,174.674393184838,646.732497940194,563.297393657492,374.587852143519,510.223607490195,327.906219260584,354.817394877175,156.617626499447,141.365385729964,91.4624581691494,627.165895467979,275.678034258364,615.042315018678,442.99029615076,459.963194475483,457.339157321581,776.599922570091,672.351491259001,733.684609316787,384.15920917756,355.651350362577,216.102900481591,655.647661351938,384.850129607005,462.668010438573,16.6891676186434,18.4965740969588,22.4334750693962,24.9369561145219,18.9222884980298,19.2870704036496,19.3808665744049,12.7306673407418,16.4397738388171,12.3197371122926,6.55366333514558,8.00558328477199,11.9484462318622,4.80475184443215,6.8970292794538,4.62731410949403,1.90810750907073,17.0763890732835,21.1405388173538,15.6732023531344,31.7211188589662,76.7896731284704,2.89722493252585,19.4742672412695,34.5849471219265,31.0458263489259,7.02183280640848,9.12582346574053,5.6813736688168,9.74133642039557,10.6954038609767,9.42738903919479,7.75368631042674,8.93652750424551,19.5979719180283,16.6475964876644,11.18177751305,12.4357508003632,6.95527405764126,4.89345658434799,3.21048993707656,4.18142095219907,5.77877647757588,14.562378756873,10.3088233644789,7.59059076058509,5.09704662918555,7.81300144627702,14.2567806667256,5.72185452495537,6.14335733541208,7.49584359314075,7.81364931745256,9.03240796613151,23.5879889572937,55.0926803314025,27.0821635260834,4.87613732627923,4.02420515822182,3.45228916977532,6.50590474292219,3.50936537445123,4.92478164466801,4.7717156823066,35.0377106617898,1.13441780596881,3.32594096193846,4.56740885604255,24.3621080425746,11.6574492253614,15.9437310397305,16.8764644700435,16.0199358315326,26.0597602616976,20.5101936902594,21.7358066096449,24.8876525890809,8.745545924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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=127544 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26886 | |||
|TSSclassifier=W | |||
|UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | |||
|association_with_transcript=-117bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_RNF19B_5end | |||
|id=chr1:33430403..33430421,- | |||
|ontology_enrichment_celltype=CL:0000738!5.46e-29!140;CL:0000766!4.39e-25!76;CL:0002057!4.79e-25!42;CL:0002087!5.45e-23!119;CL:0000860!1.36e-22!45;CL:0002009!3.81e-22!65;CL:0002031!1.16e-21!124;CL:0002194!1.92e-21!63;CL:0000576!1.92e-21!63;CL:0000040!1.92e-21!63;CL:0000559!1.92e-21!63;CL:0000557!4.57e-20!71;CL:0000839!4.05e-19!70;CL:0000037!8.61e-16!172;CL:0000566!8.61e-16!172;CL:0002032!7.93e-15!165;CL:0000837!7.93e-15!165;CL:0000988!1.14e-14!182;CL:0000763!1.44e-11!112;CL:0000049!1.44e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.92e-20;33!CL:0002057;6.92e-20;33!CL:0000473;7.07e-18;39!CL:0000234;7.07e-18;39!CL:0000576;4.13e-14;48!CL:0000766;8.14e-12;69!CL:0002087;9.51e-08;104!CL:0000738;1.41e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.49e-30,136;CL:0000766,2.25e-27,72;CL:0000473,1.51e-26,48;CL:0000234,1.51e-26,48;CL:0000860,4.79e-25,42;CL:0002057,4.79e-25,42;CL:0002009,1.61e-24,61;CL:0002087,1.71e-24,115;CL:0002194,8.13e-24,59;CL:0000576,8.13e-24,59;CL:0000040,8.13e-24,59;CL:0000559,8.13e-24,59;CL:0002031,4.82e-23,120;CL:0000557,4.30e-22,67;CL:0000839,4.32e-21,66;CL:0000037,1.17e-16,168;CL:0002032,1.11e-15,161;CL:0000837,1.11e-15,161;CL:0000988,4.13e-15,177;CL:0000763,1.67e-12,108;CL:0000049,1.67e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.93e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.39e-20!112;UBERON:0002390!5.68e-20!102;UBERON:0003061!5.68e-20!102;UBERON:0002371!1.32e-15!80;UBERON:0002405!3.85e-13!115;UBERON:0001474!3.17e-12!86;UBERON:0003081!3.27e-12!216;UBERON:0004765!1.66e-08!101;UBERON:0001434!1.66e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.29e-21,108;UBERON:0002390,1.75e-21,98;UBERON:0003061,1.75e-21,98;UBERON:0002405,3.50e-17,93;UBERON:0002371,4.09e-17,76;UBERON:0001474,2.10e-13,82;UBERON:0003081,1.50e-12,203;UBERON:0004765,1.92e-11,90;UBERON:0001434,2.59e-08,100 | |||
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| |||
|short_description=p1@RNF19B | |||
}} |
Revision as of 05:22, 12 September 2013
Short description: | p1@RNF19B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RNF19B_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -117bp_to_ENST00000235150, ENST00000356990, ENST00000373456, ENST00000405457, NM_001127361, NM_153341, uc001bwm.3, uc010oho.1, uc010ohp.1_5end |
EntrezGene: | RNF19B |
HGNC: | 26886 |
UniProt: | G3XA82E9PAW6Q6ZMZ0F5GY25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.49e-30 | 136 |
myeloid leukocyte | 2.25e-27 | 72 |
defensive cell | 1.51e-26 | 48 |
phagocyte | 1.51e-26 | 48 |
classical monocyte | 4.79e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.79e-25 | 42 |
macrophage dendritic cell progenitor | 1.61e-24 | 61 |
nongranular leukocyte | 1.71e-24 | 115 |
monopoietic cell | 8.13e-24 | 59 |
monocyte | 8.13e-24 | 59 |
monoblast | 8.13e-24 | 59 |
promonocyte | 8.13e-24 | 59 |
hematopoietic lineage restricted progenitor cell | 4.82e-23 | 120 |
granulocyte monocyte progenitor cell | 4.30e-22 | 67 |
myeloid lineage restricted progenitor cell | 4.32e-21 | 66 |
hematopoietic stem cell | 1.17e-16 | 168 |
hematopoietic oligopotent progenitor cell | 1.11e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.11e-15 | 161 |
hematopoietic cell | 4.13e-15 | 177 |
myeloid cell | 1.67e-12 | 108 |
common myeloid progenitor | 1.67e-12 | 108 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.29e-21 | 108 |
hematopoietic system | 1.75e-21 | 98 |
blood island | 1.75e-21 | 98 |
immune system | 3.50e-17 | 93 |
bone marrow | 4.09e-17 | 76 |
bone element | 2.10e-13 | 82 |
lateral plate mesoderm | 1.50e-12 | 203 |
skeletal element | 1.92e-11 | 90 |
skeletal system | 2.59e-08 | 100 |
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