FFCP PHASE1:Hg19::chr1:197886461..197886558,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56956|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14222|TSSclassifier=S|UniProt=Q9NQ69|association_with_transcript=0bp_to_ENST00000337020,ENST00000367387,ENST00000367388,NM_020204,uc001guk.1_5end|coexpression_cluster_id=C2547|description=CAGE_peak_1_at_LHX9_5end|id=chr1:197886461..197886558,+|ontology_enrichment_celltype=CL:0002620!1.52e-09!23|ontology_enrichment_celltype_v019=CL:0002620;4.37e-17;23|ontology_enrichment_celltype_v019_2=CL:0002620,4.18e-17,23;CL:0000057,9.75e-09,76|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;6.45e-10;5!DOID:450;6.45e-10;5!DOID:66;6.45e-10;5!DOID:423;6.45e-10;5!DOID:0080000;6.45e-10;5!DOID:11722;6.45e-10;5|ontology_enrichment_disease_v019_2=DOID:17,6.54e-10,5;DOID:450,6.54e-10,5;DOID:66,6.54e-10,5;DOID:423,6.54e-10,5;DOID:0080000,6.54e-10,5;DOID:11722,6.54e-10,5|ontology_enrichment_uberon=UBERON:0007100!2.97e-08!27;UBERON:0000948!4.56e-08!24;UBERON:0005498!4.56e-08!24;UBERON:0004140!4.56e-08!24;UBERON:0009881!4.56e-08!24;UBERON:0004141!4.56e-08!24;UBERON:0003084!4.56e-08!24;UBERON:0007005!4.56e-08!24;UBERON:0004139!4.56e-08!24;UBERON:0004291!4.56e-08!24|ontology_enrichment_uberon_v019=UBERON:0002097;1.50e-08;41!UBERON:0000488;5.14e-07;4!UBERON:0002199;6.19e-07;46!UBERON:0002416;6.19e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.15e-11,41;UBERON:0002199,2.19e-09,46;UBERON:0002416,2.19e-09,46;UBERON:0000488,5.11e-07,4|phase1_expression=0,0,0.140954404095971,0,0,4.36169262050184,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0.487932798790507,0,0,0,0.572471974262113,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,2.76997704265939,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0.575384784644301,0.256160706529101,0.709446689665756,0,0,0,0,0,0,0,0,0,0,0.398927315243264,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0.164437904603676,1.38175008892924,0.869409257205157,0,0,0,0.339928028092699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,4.98663991189768,5.78302643815306,0.50133791063589,1.15877215168659,3.1811437882044,0.486634870302636,46.7001996790495,9.97782288581538,5.35792192728069,3.6019245761871,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,0.838998872419812,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.7698683288442,0.12663051166458,0,0,0,8.41016400213461,1.06748995729705,0.49333509683432,3.42332138939743,0.269421344139376,0.980771418680752,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505008341862199,1.12606667884768,0,0,0,0,1.70148274740032,710.741736599271,709.6512030441,38.7835379121998,224.468139871133,312.352216121708,286.753921070785,299.462021837528,25.8227788329137,52.0313607560801,243.346158371326,246.233478868151,0.484938170456436,471.452738862064,489.050684796966,49.1725717700414,0,0,0,0,0,1.85910308591229,2.17688215532278,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0.482022059766964,0.110293972732394,0.217879444092406,0.237270619111097,0.404493924480493,0,0,0,0,21.8134226005642,2.94017422771084,1.26755034821831,1.96565443335525,0,0,0,2.74508496477641,0,0,0,0,0,0,2.88662684050547,32.8083046079467,3.87448690978212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531876233169741,1.04007436911366,0.257207374262142,0,0.266422179016099,0.57191197463259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0.76228387266739,1.30139853857622,2.31986643833309,0.167516265334349,4.46557126157214,0,0,0,0,0,0,0.207970861530807,2.67643483195743,0.157702415033935,1.17141414992713,0.902838299183157,0,3.10419213877515,3.32112799267718,0.184369168541703,0.260650843404249,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0,4.45254199334973,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54561517471583,1.92295876118521,3.05285149706176,0,0,294.051591614812,0.48335359146061,0,0,0,0.214840489736547,0,0,4.62966585363034,0,0,0,0.10115778085555,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.202182481573316,0,1.26377536871694,0,0,0,0,0,0,0,0.66343897524122,2.19225442626881,0,0,0,0,0.563391205064483,0,0,0,0,0.844430541190656,0.329294892959902,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0.478278818186467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0.242721043499027,0,0.568272293612826,0,0.593929361665277,0,0,1.68803299692615,0.111308705022906,0,0,0.796991953004279,0,0,0,0,28.9266816525481,0,0.179021174675609,0,0.394573622547734,0,37.7865766491765,0,0.371072392647405,0,0,0,0,0,0,0.236387681767936,0.344743373241465,8.45653378811438,32.9887490373255,6.20018970069687,1.32656082487949,0,0,0,0.658156191461918,2.1787692703798,0.41827123283581,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63232808159148,0,0,0,0.442287822516696,0,0,0.123563938946503,0,0.808813595768125,2.40773294189637,0.468528891450678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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56956 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14222 | |||
|TSSclassifier=S | |||
|UniProt=Q9NQ69 | |||
|association_with_transcript=0bp_to_ENST00000337020,ENST00000367387,ENST00000367388,NM_020204,uc001guk.1_5end | |||
|coexpression_cluster_id=C2547 | |||
|description=CAGE_peak_1_at_LHX9_5end | |||
|id=chr1:197886461..197886558,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.52e-09!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.37e-17;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.18e-17,23;CL:0000057,9.75e-09,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;6.45e-10;5!DOID:450;6.45e-10;5!DOID:66;6.45e-10;5!DOID:423;6.45e-10;5!DOID:0080000;6.45e-10;5!DOID:11722;6.45e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.54e-10,5;DOID:450,6.54e-10,5;DOID:66,6.54e-10,5;DOID:423,6.54e-10,5;DOID:0080000,6.54e-10,5;DOID:11722,6.54e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0007100!2.97e-08!27;UBERON:0000948!4.56e-08!24;UBERON:0005498!4.56e-08!24;UBERON:0004140!4.56e-08!24;UBERON:0009881!4.56e-08!24;UBERON:0004141!4.56e-08!24;UBERON:0003084!4.56e-08!24;UBERON:0007005!4.56e-08!24;UBERON:0004139!4.56e-08!24;UBERON:0004291!4.56e-08!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.50e-08;41!UBERON:0000488;5.14e-07;4!UBERON:0002199;6.19e-07;46!UBERON:0002416;6.19e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.15e-11,41;UBERON:0002199,2.19e-09,46;UBERON:0002416,2.19e-09,46;UBERON:0000488,5.11e-07,4 | |||
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| |||
|short_description=p1@LHX9 | |||
}} |
Revision as of 02:34, 12 September 2013
Short description: | p1@LHX9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LHX9_5end |
Coexpression cluster: | C2547_extraskeletal_Fibroblast_glioblastoma_Sertoli_mesothelioma_hepatoma_neuroepithelioma |
Association with transcript: | 0bp_to_ENST00000337020, ENST00000367387, ENST00000367388, NM_020204, uc001guk.1_5end |
EntrezGene: | LHX9 |
HGNC: | 14222 |
UniProt: | Q9NQ69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.18e-17 | 23 |
fibroblast | 9.75e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.15e-11 | 41 |
integument | 2.19e-09 | 46 |
integumental system | 2.19e-09 | 46 |
atypical epithelium | 5.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.54e-10 | 5 |
myotonic disease | 6.54e-10 | 5 |
muscle tissue disease | 6.54e-10 | 5 |
myopathy | 6.54e-10 | 5 |
muscular disease | 6.54e-10 | 5 |
myotonic dystrophy | 6.54e-10 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.