FFCP PHASE1:Hg19::chr1:183212478..183212492,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3918|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6493|TSSclassifier=S|UniProt=|association_with_transcript=-76bp_to_ENST00000476255_5end|coexpression_cluster_id=C268|description=CAGE_peak_7_at_LAMC2_5end|id=chr1:183212478..183212492,+|ontology_enrichment_celltype=CL:0000066!8.32e-37!254;CL:0002076!1.84e-28!43;CL:0002159!3.89e-21!13;CL:0000223!9.22e-19!59;CL:0002368!4.91e-18!13;CL:0002077!1.10e-12!33;CL:0000244!6.30e-11!4;CL:0000731!6.30e-11!4;CL:0000076!8.20e-11!62;CL:0000362!1.43e-10!8;CL:0000240!3.01e-10!6;CL:0000311!3.01e-10!6;CL:0000079!3.01e-10!6;CL:0000237!3.01e-10!6;CL:0000036!3.01e-10!6;CL:0000357!3.01e-10!6;CL:0000114!3.01e-10!6;CL:0000063!4.18e-10!578;CL:0000220!4.76e-10!246;CL:0002321!7.13e-10!248;CL:0002202!1.47e-09!9;CL:0002632!1.47e-09!9;CL:0002251!4.09e-09!21;CL:0002166!1.26e-08!3;CL:0002621!1.43e-08!3;CL:0000068!1.70e-08!3;CL:0000069!1.70e-08!3;CL:0000307!1.70e-08!3;CL:0000377!1.70e-08!3;CL:0000312!3.89e-08!5;CL:0002231!4.26e-08!3;CL:0000622!1.88e-07!5|ontology_enrichment_celltype_v019=CL:0002076;6.50e-25;42!CL:0002368;1.02e-24;13!CL:0002621;8.14e-21;3!CL:0000240;5.65e-18;6!CL:0000311;5.65e-18;6!CL:0000079;5.65e-18;6!CL:0000237;5.65e-18;6!CL:0002159;7.36e-17;14!CL:0000244;2.11e-16;4!CL:0000731;2.11e-16;4!CL:0002327;2.16e-15;4!CL:0000312;1.10e-12;5!CL:0002166;3.18e-10;3!CL:0000307;4.37e-10;3!CL:0002231;5.48e-10;3!CL:0002251;3.98e-08;20!CL:0002336;8.12e-08;1!CL:0002261;8.12e-08;1!CL:0002252;8.12e-08;1!CL:0002170;8.12e-08;1!CL:0002202;2.37e-07;9!CL:0002632;2.37e-07;9!CL:0000362;2.95e-07;9|ontology_enrichment_celltype_v019_2=CL:0002076,1.64e-28,42;CL:0002368,6.20e-25,13;CL:0002621,1.22e-20,3;CL:0000223,6.73e-20,58;CL:0000066,5.36e-19,253;CL:0000240,8.79e-18,6;CL:0000311,8.79e-18,6;CL:0000079,8.79e-18,6;CL:0000237,8.79e-18,6;CL:0000036,8.79e-18,6;CL:0000357,8.79e-18,6;CL:0000114,8.79e-18,6;CL:0002159,8.02e-17,14;CL:0000244,2.00e-16,4;CL:0000731,2.00e-16,4;CL:0002327,2.77e-15,4;CL:0000312,1.52e-12,5;CL:0002166,3.04e-10,3;CL:0000068,4.58e-10,3;CL:0000069,4.58e-10,3;CL:0000307,4.58e-10,3;CL:0000377,4.58e-10,3;CL:0002231,6.57e-10,3;CL:0002251,4.58e-08,20;CL:0002252,8.69e-08,1;CL:0002336,9.29e-08,1;CL:0002261,9.29e-08,1;CL:0002170,9.29e-08,1;CL:0002202,2.27e-07,9;CL:0002632,2.27e-07,9;CL:0000362,3.50e-07,9|ontology_enrichment_development_v019=CL:0000357;5.65e-18;6!CL:0000114;5.65e-18;6!CL:0000223;5.02e-13;58!CL:0000377;4.37e-10;3|ontology_enrichment_disease=DOID:1749!7.52e-09!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005910!2.53e-14!6;UBERON:0000365!9.59e-13!5;UBERON:0001949!1.43e-08!3;UBERON:0004119!1.73e-08!169;UBERON:0000925!1.73e-08!169;UBERON:0006595!1.73e-08!169;UBERON:0005631!2.70e-07!14;UBERON:0000158!2.70e-07!14;UBERON:0001004!3.25e-07!72|ontology_enrichment_uberon_v019=UBERON:0001949;8.14e-21;3!UBERON:0000486;4.01e-20;12!UBERON:0001911;2.16e-15;4!UBERON:0000365;3.14e-13;5!UBERON:0005910;4.17e-11;6!UBERON:0003929;3.16e-09;7!UBERON:0003729;2.12e-08;13!UBERON:0003350;3.94e-08;8!UBERON:0001828;3.94e-08;8!UBERON:0001708;7.11e-08;4!UBERON:0008895;7.11e-08;4!UBERON:0010371;2.42e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.22e-20,3;UBERON:0001911,2.77e-15,4;UBERON:0005333,2.77e-15,4;UBERON:0008425,2.77e-15,4;UBERON:0005311,2.77e-15,4;UBERON:0000365,3.02e-13,5;UBERON:0005910,4.03e-11,6;UBERON:0004119,5.70e-10,160;UBERON:0000925,5.70e-10,160;UBERON:0006595,5.70e-10,160;UBERON:0003729,2.49e-08,13;UBERON:0003350,4.56e-08,8;UBERON:0001828,4.56e-08,8;UBERON:0000076,6.73e-08,8;UBERON:0001708,6.87e-08,4;UBERON:0008895,6.87e-08,4;UBERON:0003102,1.78e-07,99;UBERON:0001004,1.91e-07,74|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.245733936501509,0,1.31064823278103,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0,0,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.63826047591912,2.45471508531751,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,2.30475599358114,1.1240175325762,3.31745608958382,1.29623823221941,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,7.8951600253464,2.55195175036296,1.16426079513703,1.45316969256981,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0.116210378459959,0.241718899183244,6.41620704970512,1.19705285616665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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-76bp_to_ENST00000476255_5end | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_7_at_LAMC2_5end | |||
|id=chr1:183212478..183212492,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.32e-37!254;CL:0002076!1.84e-28!43;CL:0002159!3.89e-21!13;CL:0000223!9.22e-19!59;CL:0002368!4.91e-18!13;CL:0002077!1.10e-12!33;CL:0000244!6.30e-11!4;CL:0000731!6.30e-11!4;CL:0000076!8.20e-11!62;CL:0000362!1.43e-10!8;CL:0000240!3.01e-10!6;CL:0000311!3.01e-10!6;CL:0000079!3.01e-10!6;CL:0000237!3.01e-10!6;CL:0000036!3.01e-10!6;CL:0000357!3.01e-10!6;CL:0000114!3.01e-10!6;CL:0000063!4.18e-10!578;CL:0000220!4.76e-10!246;CL:0002321!7.13e-10!248;CL:0002202!1.47e-09!9;CL:0002632!1.47e-09!9;CL:0002251!4.09e-09!21;CL:0002166!1.26e-08!3;CL:0002621!1.43e-08!3;CL:0000068!1.70e-08!3;CL:0000069!1.70e-08!3;CL:0000307!1.70e-08!3;CL:0000377!1.70e-08!3;CL:0000312!3.89e-08!5;CL:0002231!4.26e-08!3;CL:0000622!1.88e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.50e-25;42!CL:0002368;1.02e-24;13!CL:0002621;8.14e-21;3!CL:0000240;5.65e-18;6!CL:0000311;5.65e-18;6!CL:0000079;5.65e-18;6!CL:0000237;5.65e-18;6!CL:0002159;7.36e-17;14!CL:0000244;2.11e-16;4!CL:0000731;2.11e-16;4!CL:0002327;2.16e-15;4!CL:0000312;1.10e-12;5!CL:0002166;3.18e-10;3!CL:0000307;4.37e-10;3!CL:0002231;5.48e-10;3!CL:0002251;3.98e-08;20!CL:0002336;8.12e-08;1!CL:0002261;8.12e-08;1!CL:0002252;8.12e-08;1!CL:0002170;8.12e-08;1!CL:0002202;2.37e-07;9!CL:0002632;2.37e-07;9!CL:0000362;2.95e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.64e-28,42;CL:0002368,6.20e-25,13;CL:0002621,1.22e-20,3;CL:0000223,6.73e-20,58;CL:0000066,5.36e-19,253;CL:0000240,8.79e-18,6;CL:0000311,8.79e-18,6;CL:0000079,8.79e-18,6;CL:0000237,8.79e-18,6;CL:0000036,8.79e-18,6;CL:0000357,8.79e-18,6;CL:0000114,8.79e-18,6;CL:0002159,8.02e-17,14;CL:0000244,2.00e-16,4;CL:0000731,2.00e-16,4;CL:0002327,2.77e-15,4;CL:0000312,1.52e-12,5;CL:0002166,3.04e-10,3;CL:0000068,4.58e-10,3;CL:0000069,4.58e-10,3;CL:0000307,4.58e-10,3;CL:0000377,4.58e-10,3;CL:0002231,6.57e-10,3;CL:0002251,4.58e-08,20;CL:0002252,8.69e-08,1;CL:0002336,9.29e-08,1;CL:0002261,9.29e-08,1;CL:0002170,9.29e-08,1;CL:0002202,2.27e-07,9;CL:0002632,2.27e-07,9;CL:0000362,3.50e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;5.65e-18;6!CL:0000114;5.65e-18;6!CL:0000223;5.02e-13;58!CL:0000377;4.37e-10;3 | |||
|ontology_enrichment_disease=DOID:1749!7.52e-09!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005910!2.53e-14!6;UBERON:0000365!9.59e-13!5;UBERON:0001949!1.43e-08!3;UBERON:0004119!1.73e-08!169;UBERON:0000925!1.73e-08!169;UBERON:0006595!1.73e-08!169;UBERON:0005631!2.70e-07!14;UBERON:0000158!2.70e-07!14;UBERON:0001004!3.25e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;8.14e-21;3!UBERON:0000486;4.01e-20;12!UBERON:0001911;2.16e-15;4!UBERON:0000365;3.14e-13;5!UBERON:0005910;4.17e-11;6!UBERON:0003929;3.16e-09;7!UBERON:0003729;2.12e-08;13!UBERON:0003350;3.94e-08;8!UBERON:0001828;3.94e-08;8!UBERON:0001708;7.11e-08;4!UBERON:0008895;7.11e-08;4!UBERON:0010371;2.42e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.22e-20,3;UBERON:0001911,2.77e-15,4;UBERON:0005333,2.77e-15,4;UBERON:0008425,2.77e-15,4;UBERON:0005311,2.77e-15,4;UBERON:0000365,3.02e-13,5;UBERON:0005910,4.03e-11,6;UBERON:0004119,5.70e-10,160;UBERON:0000925,5.70e-10,160;UBERON:0006595,5.70e-10,160;UBERON:0003729,2.49e-08,13;UBERON:0003350,4.56e-08,8;UBERON:0001828,4.56e-08,8;UBERON:0000076,6.73e-08,8;UBERON:0001708,6.87e-08,4;UBERON:0008895,6.87e-08,4;UBERON:0003102,1.78e-07,99;UBERON:0001004,1.91e-07,74 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.245733936501509,0,1.31064823278103,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0,0,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.63826047591912,2.45471508531751,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,2.30475599358114,1.1240175325762,3.31745608958382,1.29623823221941,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,7.8951600253464,2.55195175036296,1.16426079513703,1.45316969256981,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0.116210378459959,0.241718899183244,6.41620704970512,1.19705285616665,0,0,0,0,0.539107359730903,0,0,1.37217117560738,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,6.44611169907815,6.53446229041361,1.91419068741876,1.92199783625545,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50177493086331,0.670302275535787,3.26672954583968,0,0.43050537267123,8.42357378338128,3.99087138183008,5.97280840538095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,2.74297483886435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0.489961987071888,0.174118413160805,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0.422624246717254,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.366857197043358,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0.244209805832924,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p7@LAMC2 | |||
}} |
Revision as of 02:11, 12 September 2013
Short description: | p7@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -76bp_to_ENST00000476255_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.22e-20 | 3 |
mammary gland | 2.77e-15 | 4 |
mammary bud | 2.77e-15 | 4 |
mammary ridge | 2.77e-15 | 4 |
mammary placode | 2.77e-15 | 4 |
urothelium | 3.02e-13 | 5 |
transitional epithelium | 4.03e-11 | 6 |
endoderm-derived structure | 5.70e-10 | 160 |
endoderm | 5.70e-10 | 160 |
presumptive endoderm | 5.70e-10 | 160 |
mouth mucosa | 2.49e-08 | 13 |
epithelium of mucosa | 4.56e-08 | 8 |
gingiva | 4.56e-08 | 8 |
external ectoderm | 6.73e-08 | 8 |
jaw skeleton | 6.87e-08 | 4 |
splanchnocranium | 6.87e-08 | 4 |
surface structure | 1.78e-07 | 99 |
respiratory system | 1.91e-07 | 74 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.