FFCP PHASE1:Hg19::chr1:183208516..183208541,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3918|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6493|TSSclassifier=S|UniProt=|association_with_transcript=-94bp_to_ENST00000461729_5end|coexpression_cluster_id=C268|description=CAGE_peak_6_at_LAMC2_5end|id=chr1:183208516..183208541,+|ontology_enrichment_celltype=CL:0002076!9.92e-26!43;CL:0000066!2.58e-22!254;CL:0000223!1.01e-16!59;CL:0002368!2.27e-16!13;CL:0002159!1.69e-10!13;CL:0002251!4.44e-10!21;CL:0002202!1.37e-08!9;CL:0002632!1.37e-08!9;CL:0002166!3.10e-08!3;CL:0002621!3.99e-08!3;CL:0000068!1.15e-07!3;CL:0000069!1.15e-07!3;CL:0000307!1.15e-07!3;CL:0000377!1.15e-07!3;CL:0002541!5.40e-07!3|ontology_enrichment_celltype_v019=CL:0002368;5.67e-33;13!CL:0002076;2.25e-30;42!CL:0002166;5.38e-22;3!CL:0002621;5.98e-22;3!CL:0000244;9.47e-17;4!CL:0000731;9.47e-17;4!CL:0002159;2.12e-12;14!CL:0002202;3.34e-12;9!CL:0002632;3.34e-12;9!CL:0000240;7.79e-11;6!CL:0000311;7.79e-11;6!CL:0000079;7.79e-11;6!CL:0000237;7.79e-11;6!CL:0002231;2.59e-10;3!CL:0002328;5.94e-10;3!CL:0000307;5.94e-10;3!CL:0002251;1.54e-08;20!CL:0002336;4.40e-08;1!CL:0002261;4.40e-08;1!CL:0002252;4.40e-08;1!CL:0002170;4.40e-08;1!CL:0002327;1.12e-07;4|ontology_enrichment_celltype_v019_2=CL:0002076,2.97e-34,42;CL:0002368,4.14e-33,13;CL:0000223,5.24e-24,58;CL:0002166,3.78e-22,3;CL:0002621,8.23e-22,3;CL:0000066,6.80e-17,253;CL:0000244,8.76e-17,4;CL:0000731,8.76e-17,4;CL:0002159,1.68e-12,14;CL:0002202,2.97e-12,9;CL:0002632,2.97e-12,9;CL:0000240,6.25e-11,6;CL:0000311,6.25e-11,6;CL:0000079,6.25e-11,6;CL:0000237,6.25e-11,6;CL:0000036,6.25e-11,6;CL:0000357,6.25e-11,6;CL:0000114,6.25e-11,6;CL:0002231,2.84e-10,3;CL:0000068,5.42e-10,3;CL:0000069,5.42e-10,3;CL:0002328,5.42e-10,3;CL:0000307,5.42e-10,3;CL:0000377,5.42e-10,3;CL:0002251,1.48e-08,20;CL:0002252,3.10e-08,1;CL:0002336,3.83e-08,1;CL:0002261,3.83e-08,1;CL:0002170,3.83e-08,1;CL:0002327,1.24e-07,4;CL:0002321,3.43e-07,250|ontology_enrichment_development_v019=CL:0000223;1.46e-14;58!CL:0000357;7.79e-11;6!CL:0000114;7.79e-11;6!CL:0000377;5.94e-10;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!7.17e-11!14;UBERON:0000158!7.17e-11!14;UBERON:0003124!1.94e-10!7;UBERON:0004119!2.60e-09!169;UBERON:0000925!2.60e-09!169;UBERON:0006595!2.60e-09!169;UBERON:0001949!3.99e-08!3;UBERON:0001004!1.12e-07!72;UBERON:0000365!1.20e-07!5;UBERON:0004923!3.84e-07!57;UBERON:0000476!5.40e-07!3;UBERON:0000920!5.40e-07!3|ontology_enrichment_uberon_v019=UBERON:0001949;5.98e-22;3!UBERON:0000486;6.32e-21;12!UBERON:0001708;1.20e-16;4!UBERON:0008895;1.20e-16;4!UBERON:0000365;1.65e-13;5!UBERON:0011159;1.99e-13;5!UBERON:0005910;2.42e-11;6!UBERON:0004815;5.94e-10;3!UBERON:0002031;5.94e-10;3!UBERON:0003929;1.03e-09;7!UBERON:0005911;7.07e-09;36!UBERON:0003729;7.93e-09;13!UBERON:0003350;1.48e-08;8!UBERON:0001828;1.48e-08;8!UBERON:0004913;4.40e-08;1!UBERON:0003703;4.40e-08;1!UBERON:0001174;4.40e-08;1!UBERON:0004914;4.40e-08;1!UBERON:0004807;9.65e-08;22!UBERON:0001911;1.12e-07;4!UBERON:0007196;2.22e-07;15!UBERON:0001558;2.22e-07;15!UBERON:0000065;3.10e-07;44|ontology_enrichment_uberon_v019_2=UBERON:0001949,8.23e-22,3;UBERON:0001708,9.24e-17,4;UBERON:0008895,9.24e-17,4;UBERON:0000365,1.55e-13,5;UBERON:0011159,1.62e-13,5;UBERON:0004119,6.65e-12,160;UBERON:0000925,6.65e-12,160;UBERON:0006595,6.65e-12,160;UBERON:0005910,2.30e-11,6;UBERON:0010188,2.38e-11,6;UBERON:0002539,2.38e-11,6;UBERON:0008816,2.38e-11,6;UBERON:0004815,5.42e-10,3;UBERON:0002031,5.42e-10,3;UBERON:0001004,1.91e-09,74;UBERON:0003729,8.35e-09,13;UBERON:0003350,1.66e-08,8;UBERON:0001828,1.66e-08,8;UBERON:0005911,2.51e-08,82;UBERON:0004913,5.43e-08,1;UBERON:0003703,5.43e-08,1;UBERON:0001174,5.43e-08,1;UBERON:0004914,5.43e-08,1;UBERON:0001911,1.24e-07,4;UBERON:0005333,1.24e-07,4;UBERON:0008425,1.24e-07,4;UBERON:0005311,1.24e-07,4;UBERON:0007196,2.08e-07,15;UBERON:0001558,2.08e-07,15;UBERON:0000065,3.93e-07,54|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0.873765488520689,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0.264818361626438,0,0,0,0,0.24666754841716,0,0,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28543450377605,3.27295344709002,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64625428112938,0,2.51322431029077,1.38882667737794,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,1.87467667973554,10.4148919483293,4.11147782002921,1.34337784054272,1.16253575405585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-94bp_to_ENST00000461729_5end | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_6_at_LAMC2_5end | |||
|id=chr1:183208516..183208541,+ | |||
|ontology_enrichment_celltype=CL:0002076!9.92e-26!43;CL:0000066!2.58e-22!254;CL:0000223!1.01e-16!59;CL:0002368!2.27e-16!13;CL:0002159!1.69e-10!13;CL:0002251!4.44e-10!21;CL:0002202!1.37e-08!9;CL:0002632!1.37e-08!9;CL:0002166!3.10e-08!3;CL:0002621!3.99e-08!3;CL:0000068!1.15e-07!3;CL:0000069!1.15e-07!3;CL:0000307!1.15e-07!3;CL:0000377!1.15e-07!3;CL:0002541!5.40e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;5.67e-33;13!CL:0002076;2.25e-30;42!CL:0002166;5.38e-22;3!CL:0002621;5.98e-22;3!CL:0000244;9.47e-17;4!CL:0000731;9.47e-17;4!CL:0002159;2.12e-12;14!CL:0002202;3.34e-12;9!CL:0002632;3.34e-12;9!CL:0000240;7.79e-11;6!CL:0000311;7.79e-11;6!CL:0000079;7.79e-11;6!CL:0000237;7.79e-11;6!CL:0002231;2.59e-10;3!CL:0002328;5.94e-10;3!CL:0000307;5.94e-10;3!CL:0002251;1.54e-08;20!CL:0002336;4.40e-08;1!CL:0002261;4.40e-08;1!CL:0002252;4.40e-08;1!CL:0002170;4.40e-08;1!CL:0002327;1.12e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.97e-34,42;CL:0002368,4.14e-33,13;CL:0000223,5.24e-24,58;CL:0002166,3.78e-22,3;CL:0002621,8.23e-22,3;CL:0000066,6.80e-17,253;CL:0000244,8.76e-17,4;CL:0000731,8.76e-17,4;CL:0002159,1.68e-12,14;CL:0002202,2.97e-12,9;CL:0002632,2.97e-12,9;CL:0000240,6.25e-11,6;CL:0000311,6.25e-11,6;CL:0000079,6.25e-11,6;CL:0000237,6.25e-11,6;CL:0000036,6.25e-11,6;CL:0000357,6.25e-11,6;CL:0000114,6.25e-11,6;CL:0002231,2.84e-10,3;CL:0000068,5.42e-10,3;CL:0000069,5.42e-10,3;CL:0002328,5.42e-10,3;CL:0000307,5.42e-10,3;CL:0000377,5.42e-10,3;CL:0002251,1.48e-08,20;CL:0002252,3.10e-08,1;CL:0002336,3.83e-08,1;CL:0002261,3.83e-08,1;CL:0002170,3.83e-08,1;CL:0002327,1.24e-07,4;CL:0002321,3.43e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;1.46e-14;58!CL:0000357;7.79e-11;6!CL:0000114;7.79e-11;6!CL:0000377;5.94e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.17e-11!14;UBERON:0000158!7.17e-11!14;UBERON:0003124!1.94e-10!7;UBERON:0004119!2.60e-09!169;UBERON:0000925!2.60e-09!169;UBERON:0006595!2.60e-09!169;UBERON:0001949!3.99e-08!3;UBERON:0001004!1.12e-07!72;UBERON:0000365!1.20e-07!5;UBERON:0004923!3.84e-07!57;UBERON:0000476!5.40e-07!3;UBERON:0000920!5.40e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;5.98e-22;3!UBERON:0000486;6.32e-21;12!UBERON:0001708;1.20e-16;4!UBERON:0008895;1.20e-16;4!UBERON:0000365;1.65e-13;5!UBERON:0011159;1.99e-13;5!UBERON:0005910;2.42e-11;6!UBERON:0004815;5.94e-10;3!UBERON:0002031;5.94e-10;3!UBERON:0003929;1.03e-09;7!UBERON:0005911;7.07e-09;36!UBERON:0003729;7.93e-09;13!UBERON:0003350;1.48e-08;8!UBERON:0001828;1.48e-08;8!UBERON:0004913;4.40e-08;1!UBERON:0003703;4.40e-08;1!UBERON:0001174;4.40e-08;1!UBERON:0004914;4.40e-08;1!UBERON:0004807;9.65e-08;22!UBERON:0001911;1.12e-07;4!UBERON:0007196;2.22e-07;15!UBERON:0001558;2.22e-07;15!UBERON:0000065;3.10e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,8.23e-22,3;UBERON:0001708,9.24e-17,4;UBERON:0008895,9.24e-17,4;UBERON:0000365,1.55e-13,5;UBERON:0011159,1.62e-13,5;UBERON:0004119,6.65e-12,160;UBERON:0000925,6.65e-12,160;UBERON:0006595,6.65e-12,160;UBERON:0005910,2.30e-11,6;UBERON:0010188,2.38e-11,6;UBERON:0002539,2.38e-11,6;UBERON:0008816,2.38e-11,6;UBERON:0004815,5.42e-10,3;UBERON:0002031,5.42e-10,3;UBERON:0001004,1.91e-09,74;UBERON:0003729,8.35e-09,13;UBERON:0003350,1.66e-08,8;UBERON:0001828,1.66e-08,8;UBERON:0005911,2.51e-08,82;UBERON:0004913,5.43e-08,1;UBERON:0003703,5.43e-08,1;UBERON:0001174,5.43e-08,1;UBERON:0004914,5.43e-08,1;UBERON:0001911,1.24e-07,4;UBERON:0005333,1.24e-07,4;UBERON:0008425,1.24e-07,4;UBERON:0005311,1.24e-07,4;UBERON:0007196,2.08e-07,15;UBERON:0001558,2.08e-07,15;UBERON:0000065,3.93e-07,54 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0.873765488520689,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0.264818361626438,0,0,0,0,0.24666754841716,0,0,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28543450377605,3.27295344709002,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64625428112938,0,2.51322431029077,1.38882667737794,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,1.87467667973554,10.4148919483293,4.11147782002921,1.34337784054272,1.16253575405585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0.384417447767103,0,0,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,4.21063587636898,1.19705285616665,0,0,0,0.451199612907412,0.462092022626489,0,0,1.26661954671451,0,0,0,0,0,0,0.764628819135115,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,3.96683796866347,4.61256161676255,2.29702882490251,3.94515345336645,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92444225451024,0.670302275535787,1.08890984861323,0.470719003883896,2.58303223602738,0,3.54744122829341,5.97280840538095,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0.69169171316418,0.179515288819544,0,0.31900115973192,0.274792780205587,1.06606955203727,0,0,0,0,0,0,0,0,1.05499032264014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.391969589657511,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.320635281006135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0.298509605773748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0.438568099157414,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,0.49131575253029,1.18284868973636,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.79832133146375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0,0,0,0,0,0.31020638566432,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299823467774787,0,0.705789743431384,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0.23806443146374,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p6@LAMC2 | |||
}} |
Revision as of 02:11, 12 September 2013
Short description: | p6@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -94bp_to_ENST00000461729_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 8.23e-22 | 3 |
jaw skeleton | 9.24e-17 | 4 |
splanchnocranium | 9.24e-17 | 4 |
urothelium | 1.55e-13 | 5 |
primary subdivision of cranial skeletal system | 1.62e-13 | 5 |
endoderm-derived structure | 6.65e-12 | 160 |
endoderm | 6.65e-12 | 160 |
presumptive endoderm | 6.65e-12 | 160 |
transitional epithelium | 2.30e-11 | 6 |
protuberance | 2.38e-11 | 6 |
pharyngeal arch | 2.38e-11 | 6 |
embryonic head | 2.38e-11 | 6 |
lower respiratory tract epithelium | 5.42e-10 | 3 |
epithelium of bronchus | 5.42e-10 | 3 |
respiratory system | 1.91e-09 | 74 |
mouth mucosa | 8.35e-09 | 13 |
epithelium of mucosa | 1.66e-08 | 8 |
gingiva | 1.66e-08 | 8 |
endo-epithelium | 2.51e-08 | 82 |
hepatopancreatic ampulla | 5.43e-08 | 1 |
extrahepatic bile duct | 5.43e-08 | 1 |
common bile duct | 5.43e-08 | 1 |
duodenal papilla | 5.43e-08 | 1 |
mammary gland | 1.24e-07 | 4 |
mammary bud | 1.24e-07 | 4 |
mammary ridge | 1.24e-07 | 4 |
mammary placode | 1.24e-07 | 4 |
tracheobronchial tree | 2.08e-07 | 15 |
lower respiratory tract | 2.08e-07 | 15 |
respiratory tract | 3.93e-07 | 54 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.