FFCP PHASE1:Hg19::chr1:170632285..170632309,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5396|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9142|TSSclassifier=S|UniProt=P54821|association_with_transcript=10bp_to_ENST00000367760_5end|coexpression_cluster_id=C929|description=CAGE_peak_1_at_PRRX1_5end|id=chr1:170632285..170632309,+|ontology_enrichment_celltype=CL:0000055!2.38e-37!180;CL:0000057!1.25e-24!75;CL:0000680!1.02e-12!57;CL:0000056!1.02e-12!57;CL:0000355!1.02e-12!57;CL:0000187!9.15e-12!54;CL:0002620!1.03e-11!23;CL:0000183!1.91e-10!59;CL:0000393!4.19e-10!60;CL:0000211!4.19e-10!60;CL:0000192!1.23e-08!42;CL:0000514!1.23e-08!42;CL:0000359!5.87e-08!32;CL:0002334!8.75e-08!12;CL:0000136!3.88e-07!15|ontology_enrichment_celltype_v019=CL:0002620;2.26e-12;23!CL:0000057;5.02e-10;73!CL:0002334;3.80e-08;12!CL:0002320;1.24e-07;188!CL:0000359;1.32e-07;32!CL:0000187;3.64e-07;55!CL:0002570;5.35e-07;8!CL:0000192;6.58e-07;43|ontology_enrichment_celltype_v019_2=CL:0000057,1.56e-25,76;CL:0000680,2.61e-13,58;CL:0000056,2.61e-13,58;CL:0000355,2.61e-13,58;CL:0002620,2.17e-12,23;CL:0000187,2.65e-12,55;CL:0000393,2.51e-10,61;CL:0000211,2.51e-10,61;CL:0000192,5.33e-09,43;CL:0000514,5.33e-09,43;CL:0002334,3.73e-08,12;CL:0000359,6.56e-08,32;CL:0000136,1.81e-07,15;CL:0000048,2.01e-07,427;CL:0002570,5.50e-07,8|ontology_enrichment_development_v019=CL:0000355;2.53e-07;58!CL:0000514;6.58e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!4.04e-22!83;UBERON:0002329!4.04e-22!83;UBERON:0003077!4.04e-22!83;UBERON:0003059!4.04e-22!83;UBERON:0007282!4.04e-22!83;UBERON:0009618!4.04e-22!83;UBERON:0007285!4.04e-22!83;UBERON:0004290!9.61e-19!70;UBERON:0000475!1.19e-16!365;UBERON:0000486!3.99e-15!82;UBERON:0003102!1.19e-14!95;UBERON:0002385!2.89e-14!63;UBERON:0001015!2.89e-14!63;UBERON:0000383!2.89e-14!63;UBERON:0001134!3.61e-14!61;UBERON:0002036!3.61e-14!61;UBERON:0003082!3.61e-14!61;UBERON:0002199!1.61e-11!45;UBERON:0002416!1.61e-11!45;UBERON:0007023!5.15e-11!115;UBERON:0000468!2.80e-10!659;UBERON:0002097!2.75e-09!40;UBERON:0001013!4.92e-09!14;UBERON:0000481!6.84e-09!347;UBERON:0000479!6.88e-09!787;UBERON:0004872!8.05e-08!84;UBERON:0005256!8.93e-08!143;UBERON:0000153!4.03e-07!129;UBERON:0007811!4.03e-07!129;UBERON:0000924!6.49e-07!173;UBERON:0006601!6.49e-07!173;UBERON:0000078!7.32e-07!18;UBERON:0000033!7.61e-07!123;UBERON:0001637!8.89e-07!42;UBERON:0003509!8.89e-07!42;UBERON:0004572!8.89e-07!42|ontology_enrichment_uberon_v019=UBERON:0002385;8.12e-10;31!UBERON:0001015;8.12e-10;31!UBERON:0000383;8.12e-10;31!UBERON:0001013;1.67e-09;14!UBERON:0002384;8.63e-09;198!UBERON:0002199;1.52e-08;46!UBERON:0002416;1.52e-08;46!UBERON:0002204;2.32e-08;70!UBERON:0002097;3.91e-08;41!UBERON:0003102;1.01e-07;50!UBERON:0001134;1.82e-07;16!UBERON:0002036;1.82e-07;16!UBERON:0002067;7.31e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.04e-20,73;UBERON:0003077,1.01e-19,72;UBERON:0007285,1.01e-19,72;UBERON:0002329,1.15e-19,71;UBERON:0003059,1.15e-19,71;UBERON:0007282,1.15e-19,71;UBERON:0004290,1.15e-19,71;UBERON:0009618,1.15e-19,71;UBERON:0000486,6.39e-16,83;UBERON:0003102,1.11e-15,99;UBERON:0007503,1.20e-15,78;UBERON:0001134,7.69e-15,62;UBERON:0002036,7.69e-15,62;UBERON:0003082,7.69e-15,62;UBERON:0002385,1.67e-14,64;UBERON:0001015,1.67e-14,64;UBERON:0000383,1.67e-14,64;UBERON:0002199,3.73e-13,46;UBERON:0002416,3.73e-13,46;UBERON:0010314,1.31e-12,132;UBERON:0000479,3.26e-12,773;UBERON:0007023,5.03e-11,114;UBERON:0002097,9.73e-11,41;UBERON:0001013,1.77e-09,14;UBERON:0005256,1.34e-07,122;UBERON:0003104,1.44e-07,160;UBERON:0009142,1.44e-07,160;UBERON:0004872,4.59e-07,83;UBERON:0001637,5.05e-07,42;UBERON:0003509,5.05e-07,42;UBERON:0004572,5.05e-07,42;UBERON:0004121,5.27e-07,171;UBERON:0000924,5.27e-07,171;UBERON:0006601,5.27e-07,171;UBERON:0007100,6.54e-07,27;UBERON:0004573,6.71e-07,33;UBERON:0004571,6.71e-07,33;UBERON:0002067,7.44e-07,9;UBERON:0004016,7.44e-07,9;UBERON:0010083,7.44e-07,9|phase1_expression=77.031632810716,50.313623114381,19.1697989570521,23.01685862122,6.70441641640932,31.4041868676133,5.06599756336621,51.8010296210001,56.677281319365,0.491467873003018,0,0,0,14.2331305904054,5.30235801164665,31.5992818832334,27.121253761079,23.3699228923959,20.9811103479918,1.10808952269109,0.612002073732759,0.940364164434263,4.57977579409691,6.84372125364421,4.2684497462233,4.35556412763322,3.85872770414745,2.67616656466509,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,5.36560687762909,3.83587685530591,25.3007406669196,45.621749867866,51.4205142310924,77.9380228110077,27.7381876072502,0,0,0.43917392846563,7.20384915237419,0,0,0,0,0,0,0,0,0,7.74211135595512,0,0,2.51699661725944,0,0.208994966536811,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0.366403487860815,0,0,0,33.7940927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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=S | |||
|UniProt=P54821 | |||
|association_with_transcript=10bp_to_ENST00000367760_5end | |||
|coexpression_cluster_id=C929 | |||
|description=CAGE_peak_1_at_PRRX1_5end | |||
|id=chr1:170632285..170632309,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.38e-37!180;CL:0000057!1.25e-24!75;CL:0000680!1.02e-12!57;CL:0000056!1.02e-12!57;CL:0000355!1.02e-12!57;CL:0000187!9.15e-12!54;CL:0002620!1.03e-11!23;CL:0000183!1.91e-10!59;CL:0000393!4.19e-10!60;CL:0000211!4.19e-10!60;CL:0000192!1.23e-08!42;CL:0000514!1.23e-08!42;CL:0000359!5.87e-08!32;CL:0002334!8.75e-08!12;CL:0000136!3.88e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.26e-12;23!CL:0000057;5.02e-10;73!CL:0002334;3.80e-08;12!CL:0002320;1.24e-07;188!CL:0000359;1.32e-07;32!CL:0000187;3.64e-07;55!CL:0002570;5.35e-07;8!CL:0000192;6.58e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.56e-25,76;CL:0000680,2.61e-13,58;CL:0000056,2.61e-13,58;CL:0000355,2.61e-13,58;CL:0002620,2.17e-12,23;CL:0000187,2.65e-12,55;CL:0000393,2.51e-10,61;CL:0000211,2.51e-10,61;CL:0000192,5.33e-09,43;CL:0000514,5.33e-09,43;CL:0002334,3.73e-08,12;CL:0000359,6.56e-08,32;CL:0000136,1.81e-07,15;CL:0000048,2.01e-07,427;CL:0002570,5.50e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;2.53e-07;58!CL:0000514;6.58e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002385;8.12e-10;31!UBERON:0001015;8.12e-10;31!UBERON:0000383;8.12e-10;31!UBERON:0001013;1.67e-09;14!UBERON:0002384;8.63e-09;198!UBERON:0002199;1.52e-08;46!UBERON:0002416;1.52e-08;46!UBERON:0002204;2.32e-08;70!UBERON:0002097;3.91e-08;41!UBERON:0003102;1.01e-07;50!UBERON:0001134;1.82e-07;16!UBERON:0002036;1.82e-07;16!UBERON:0002067;7.31e-07;9 | |||
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| |||
|short_description=p1@PRRX1 | |||
}} |
Revision as of 01:41, 12 September 2013
Short description: | p1@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PRRX1_5end |
Coexpression cluster: | C929_myxofibrosarcoma_Fibroblast_normal_Olfactory_mesenchymal_dura_Preadipocyte |
Association with transcript: | 10bp_to_ENST00000367760_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.56e-25 | 76 |
muscle precursor cell | 2.61e-13 | 58 |
myoblast | 2.61e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.61e-13 | 58 |
skin fibroblast | 2.17e-12 | 23 |
muscle cell | 2.65e-12 | 55 |
electrically responsive cell | 2.51e-10 | 61 |
electrically active cell | 2.51e-10 | 61 |
smooth muscle cell | 5.33e-09 | 43 |
smooth muscle myoblast | 5.33e-09 | 43 |
preadipocyte | 3.73e-08 | 12 |
vascular associated smooth muscle cell | 6.56e-08 | 32 |
fat cell | 1.81e-07 | 15 |
multi fate stem cell | 2.01e-07 | 427 |
mesenchymal stem cell of adipose | 5.50e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.