FFCP PHASE1:Hg19::chr19:3557606..3557617,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=126321|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28299|TSSclassifier=S|UniProt=Q6NUT3,E9PAJ8,A8MXP7|association_with_transcript=-35bp_to_ENST00000355415,ENST00000389395,ENST00000398558,NM_001042680,NM_021731,NM_174983,uc002lxw.2,uc002lxx.2,uc002lxz.2_5end|coexpression_cluster_id=C88|description=CAGE_peak_2_at_MFSD12_5end|id=chr19:3557606..3557617,-|ontology_enrichment_celltype=CL:0002321!6.09e-13!248;CL:0000220!2.93e-12!246;CL:0000055!4.06e-09!180;CL:0000221!4.65e-09!71;CL:0000147!2.79e-08!14;CL:0000148!8.40e-08!10;CL:0000541!8.40e-08!10;CL:0000133!8.55e-08!59;CL:0000183!1.13e-07!59;CL:0000393!1.82e-07!60;CL:0000211!1.82e-07!60;CL:0000075!2.02e-07!27;CL:0002077!2.41e-07!33;CL:0000066!2.70e-07!254;CL:0000333!4.15e-07!41;CL:0000325!5.02e-07!39;CL:0000187!8.92e-07!54|ontology_enrichment_celltype_v019=CL:0000147;5.45e-09;14!CL:0000148;2.93e-08;10!CL:0000075;3.80e-07;27|ontology_enrichment_celltype_v019_2=CL:0002321,7.92e-12,250;CL:0000221,5.46e-09,72;CL:0000147,2.00e-08,14;CL:0000148,6.16e-08,10;CL:0000541,6.16e-08,10;CL:0000133,8.16e-08,59;CL:0000075,1.03e-07,27;CL:0002077,2.85e-07,34;CL:0000393,3.29e-07,61;CL:0000211,3.29e-07,61;CL:0000333,5.65e-07,41|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!1.25e-16!312;UBERON:0000483!1.34e-16!309;UBERON:0000475!2.26e-13!365;UBERON:0000481!9.69e-13!347;UBERON:0000922!5.28e-11!612;UBERON:0000064!6.91e-11!219;UBERON:0002100!1.24e-09!216;UBERON:0002050!1.64e-09!605;UBERON:0005423!1.64e-09!605;UBERON:0000923!1.71e-09!604;UBERON:0005291!1.71e-09!604;UBERON:0006598!1.71e-09!604;UBERON:0002532!1.71e-09!604;UBERON:0006554!5.37e-09!44;UBERON:0001008!1.06e-08!45;UBERON:0003104!2.87e-08!238;UBERON:0009142!2.87e-08!238;UBERON:0000468!4.97e-08!659;UBERON:0005256!5.43e-08!143;UBERON:0000486!9.60e-08!82;UBERON:0002113!1.70e-07!27;UBERON:0003918!1.70e-07!27;UBERON:0005095!1.70e-07!27;UBERON:0007687!1.70e-07!27;UBERON:0000489!4.19e-07!32|ontology_enrichment_uberon_v019=UBERON:0006554;4.30e-08;30!UBERON:0001008;4.30e-08;30!UBERON:0002113;1.32e-07;24!UBERON:0011143;1.32e-07;24!UBERON:0000489;6.92e-07;29|ontology_enrichment_uberon_v019_2=UBERON:0000483,1.02e-16,306;UBERON:0000119,1.17e-16,309;UBERON:0000922,7.01e-10,592;UBERON:0006554,9.03e-10,47;UBERON:0002100,1.24e-09,199;UBERON:0003104,1.47e-09,160;UBERON:0009142,1.47e-09,160;UBERON:0001008,1.81e-09,48;UBERON:0005423,6.85e-09,581;UBERON:0002113,3.90e-08,26;UBERON:0003918,3.90e-08,26;UBERON:0011143,3.90e-08,26;UBERON:0005095,3.90e-08,26;UBERON:0007687,3.90e-08,26;UBERON:0010371,5.72e-08,104;UBERON:0007503,7.60e-08,78;UBERON:0000486,9.58e-08,83;UBERON:0000489,1.18e-07,31;UBERON:0000025,3.59e-07,192;UBERON:0007524,3.90e-07,73;UBERON:0006555,8.18e-07,16;UBERON:0004819,8.18e-07,16;UBERON:0003077,8.29e-07,72;UBERON:0007285,8.29e-07,72|phase1_expression=1.45342703416445,2.14100523890983,3.66481450649525,6.00439790118782,2.68176656656373,4.36169262050184,0,3.15859936713415,2.35067065379855,3.44027511102112,5.58240934377942,1.74753097704138,2.90143676051299,1.48519623552056,2.31978163009541,2.6893005858071,1.20538905604795,0.730310090387373,3.41552959153355,4.062994916534,4.89601658986207,5.32873026512749,2.28988789704845,2.6006140763848,3.38965126905968,1.45185470921107,1.14940825229924,1.33808328233255,0.786728553697808,1.15148819429164,0.464448369948228,5.51652734687356,6.32532429434325,3.32778609150109,0.542270404062111,2.41687695228617,2.05520307534393,0.553995408531877,3.60980005446255,0.651032612147555,0.895661896959697,1.94336199611388,1.28787783817093,1.01778767145695,0.377875943688809,0,0.464858073811369,0.411167888021826,0.619412741790207,1.1507695692886,0.512321413058201,0.47296445977717,1.03423704220986,0.645484683583826,0,0.752969358170419,1.36453075028923,0.674170453335254,0.612167784741805,0.641858054152187,0.639337125799041,0.329851300186716,0.797854630486527,0.426224750532694,0.580418477257168,0.56738522469114,0.622822248995575,0.251248665256743,1.0429658368404,0,0,0,0.316462387440884,0.845021145247767,0.212604299965044,0.838634582033504,0.898629049171961,0.750884464207532,0.48217676009124,0.855038231223746,1.39241674039363,0.730656615058536,0,0.546138611262131,0.889509253863555,0,0,0.574752439954483,0,0,0,0.587237189370939,0,2.64342657158052,0.560508562981536,1.58030450865046,0.393419540227666,0,0.616804496998528,0.167186495390678,0.32592226663359,0.473447805734733,1.94826728407911,0.111410456885174,0.589211814949674,0.664601683750863,0.270803863765016,0.640456598628376,0.260118695119756,0.328875809207352,1.65810010671509,0.289803085735052,1.03800594213442,0.535081656179426,1.04535523804977,0.566546713487831,0.766440987203842,0.34362744548263,0,0.637130828648193,0,0.950452044448374,0.301150238155546,0.76791966692651,0,0,0,1.00803371612366,0.802320587350522,0.579297615531196,2.43806866313962,1.34140171940727,2.42938867502708,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=126321 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28299 | |||
|TSSclassifier=S | |||
|UniProt=Q6NUT3,E9PAJ8,A8MXP7 | |||
|association_with_transcript=-35bp_to_ENST00000355415,ENST00000389395,ENST00000398558,NM_001042680,NM_021731,NM_174983,uc002lxw.2,uc002lxx.2,uc002lxz.2_5end | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_2_at_MFSD12_5end | |||
|id=chr19:3557606..3557617,- | |||
|ontology_enrichment_celltype=CL:0002321!6.09e-13!248;CL:0000220!2.93e-12!246;CL:0000055!4.06e-09!180;CL:0000221!4.65e-09!71;CL:0000147!2.79e-08!14;CL:0000148!8.40e-08!10;CL:0000541!8.40e-08!10;CL:0000133!8.55e-08!59;CL:0000183!1.13e-07!59;CL:0000393!1.82e-07!60;CL:0000211!1.82e-07!60;CL:0000075!2.02e-07!27;CL:0002077!2.41e-07!33;CL:0000066!2.70e-07!254;CL:0000333!4.15e-07!41;CL:0000325!5.02e-07!39;CL:0000187!8.92e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000147;5.45e-09;14!CL:0000148;2.93e-08;10!CL:0000075;3.80e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.92e-12,250;CL:0000221,5.46e-09,72;CL:0000147,2.00e-08,14;CL:0000148,6.16e-08,10;CL:0000541,6.16e-08,10;CL:0000133,8.16e-08,59;CL:0000075,1.03e-07,27;CL:0002077,2.85e-07,34;CL:0000393,3.29e-07,61;CL:0000211,3.29e-07,61;CL:0000333,5.65e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.25e-16!312;UBERON:0000483!1.34e-16!309;UBERON:0000475!2.26e-13!365;UBERON:0000481!9.69e-13!347;UBERON:0000922!5.28e-11!612;UBERON:0000064!6.91e-11!219;UBERON:0002100!1.24e-09!216;UBERON:0002050!1.64e-09!605;UBERON:0005423!1.64e-09!605;UBERON:0000923!1.71e-09!604;UBERON:0005291!1.71e-09!604;UBERON:0006598!1.71e-09!604;UBERON:0002532!1.71e-09!604;UBERON:0006554!5.37e-09!44;UBERON:0001008!1.06e-08!45;UBERON:0003104!2.87e-08!238;UBERON:0009142!2.87e-08!238;UBERON:0000468!4.97e-08!659;UBERON:0005256!5.43e-08!143;UBERON:0000486!9.60e-08!82;UBERON:0002113!1.70e-07!27;UBERON:0003918!1.70e-07!27;UBERON:0005095!1.70e-07!27;UBERON:0007687!1.70e-07!27;UBERON:0000489!4.19e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;4.30e-08;30!UBERON:0001008;4.30e-08;30!UBERON:0002113;1.32e-07;24!UBERON:0011143;1.32e-07;24!UBERON:0000489;6.92e-07;29 | |||
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| |||
|short_description=p2@MFSD12 | |||
}} |
Revision as of 20:04, 11 September 2013
Short description: | p2@MFSD12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_MFSD12_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -35bp_to_ENST00000355415, ENST00000389395, ENST00000398558, NM_001042680, NM_021731, NM_174983, uc002lxw.2, uc002lxx.2, uc002lxz.2_5end |
EntrezGene: | MFSD12 |
HGNC: | 28299 |
UniProt: | Q6NUT3E9PAJ8A8MXP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.92e-12 | 250 |
ectodermal cell | 5.46e-09 | 72 |
pigment cell | 2.00e-08 | 14 |
melanocyte | 6.16e-08 | 10 |
melanoblast | 6.16e-08 | 10 |
neurectodermal cell | 8.16e-08 | 59 |
columnar/cuboidal epithelial cell | 1.03e-07 | 27 |
ecto-epithelial cell | 2.85e-07 | 34 |
electrically responsive cell | 3.29e-07 | 61 |
electrically active cell | 3.29e-07 | 61 |
migratory neural crest cell | 5.65e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
epithelium | 1.02e-16 | 306 |
cell layer | 1.17e-16 | 309 |
embryo | 7.01e-10 | 592 |
urinary system structure | 9.03e-10 | 47 |
trunk | 1.24e-09 | 199 |
mesenchyme | 1.47e-09 | 160 |
entire embryonic mesenchyme | 1.47e-09 | 160 |
renal system | 1.81e-09 | 48 |
developing anatomical structure | 6.85e-09 | 581 |
kidney | 3.90e-08 | 26 |
kidney mesenchyme | 3.90e-08 | 26 |
upper urinary tract | 3.90e-08 | 26 |
kidney rudiment | 3.90e-08 | 26 |
kidney field | 3.90e-08 | 26 |
ecto-epithelium | 5.72e-08 | 104 |
epithelial vesicle | 7.60e-08 | 78 |
multilaminar epithelium | 9.58e-08 | 83 |
cavitated compound organ | 1.18e-07 | 31 |
tube | 3.59e-07 | 192 |
dense mesenchyme tissue | 3.90e-07 | 73 |
excretory tube | 8.18e-07 | 16 |
kidney epithelium | 8.18e-07 | 16 |
paraxial mesoderm | 8.29e-07 | 72 |
presumptive paraxial mesoderm | 8.29e-07 | 72 |
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