FFCP PHASE1:Hg19::chr19:17137781..17137792,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27151|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23228|TSSclassifier=S|UniProt=Q8IZJ3,F8W7D1,Q6NVW5|association_with_transcript=-156bp_to_ENST00000291440,ENST00000388925,ENST00000443236,NM_015692,uc002nfb.2_5end|coexpression_cluster_id=C41|description=CAGE_peak_6_at_CPAMD8_5end|id=chr19:17137781..17137792,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000306;7.14e-26;4!CL:0002222;7.14e-26;4!CL:0002224;7.14e-26;4|ontology_enrichment_celltype_v019_2=CL:0000306,7.14e-26,4;CL:0002222,7.14e-26,4;CL:0002224,7.14e-26,4|ontology_enrichment_development_v019=UBERON:0003056;4.27e-34;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.59e-20!90;UBERON:0007023!1.84e-18!115;UBERON:0003075!1.29e-17!86;UBERON:0007284!1.29e-17!86;UBERON:0005743!4.30e-17!86;UBERON:0000073!6.54e-17!94;UBERON:0001016!6.54e-17!94;UBERON:0001017!4.70e-16!82;UBERON:0001049!2.99e-15!57;UBERON:0005068!2.99e-15!57;UBERON:0006241!2.99e-15!57;UBERON:0007135!2.99e-15!57;UBERON:0002298!4.00e-15!8;UBERON:0000924!1.43e-12!173;UBERON:0006601!1.43e-12!173;UBERON:0000153!2.53e-11!129;UBERON:0007811!2.53e-11!129;UBERON:0003076!3.20e-11!15;UBERON:0003057!3.20e-11!15;UBERON:0002616!1.10e-10!59;UBERON:0004121!1.12e-10!169;UBERON:0000341!1.39e-10!2;UBERON:0000955!4.38e-10!69;UBERON:0006238!4.38e-10!69;UBERON:0003056!8.21e-09!61;UBERON:0001896!1.04e-07!3;UBERON:0005290!1.04e-07!3;UBERON:0010096!1.04e-07!3;UBERON:0000974!1.17e-07!10;UBERON:0002780!1.29e-07!41;UBERON:0001890!1.29e-07!41;UBERON:0006240!1.29e-07!41;UBERON:0002240!1.44e-07!3;UBERON:0006331!1.64e-07!3;UBERON:0003080!2.09e-07!42;UBERON:0000033!2.28e-07!123;UBERON:0000988!3.65e-07!3|ontology_enrichment_uberon_v019=UBERON:0010077;7.14e-26;4!UBERON:0005389;7.14e-26;4!UBERON:0000484;7.14e-26;4!UBERON:0000965;7.14e-26;4!UBERON:0001803;7.14e-26;4!UBERON:0000019;5.37e-22;19!UBERON:0000047;5.37e-22;19!UBERON:0004088;5.37e-22;19!UBERON:0010230;5.37e-22;19!UBERON:0000966;4.21e-21;5!UBERON:0005388;4.21e-21;5!UBERON:0001802;4.21e-21;5!UBERON:0000970;5.71e-21;20!UBERON:0002104;4.86e-20;21!UBERON:0001456;4.86e-20;21!UBERON:0000020;2.02e-18;23!UBERON:0001032;1.03e-17;24!UBERON:0004456;1.03e-17;24!UBERON:0007625;2.37e-10;11!UBERON:0001801;2.00e-08;14!UBERON:0001444;3.54e-08;48!UBERON:0000153;1.91e-07;54|ontology_enrichment_uberon_v019_2=UBERON:0010077,7.14e-26,4;UBERON:0005389,7.14e-26,4;UBERON:0000484,7.14e-26,4;UBERON:0002546,7.14e-26,4;UBERON:0000965,7.14e-26,4;UBERON:0001803,7.14e-26,4;UBERON:0003073,7.14e-26,4;UBERON:0005426,7.14e-26,4;UBERON:0000019,5.71e-21,20;UBERON:0000047,5.71e-21,20;UBERON:0010312,5.71e-21,20;UBERON:0004088,5.71e-21,20;UBERON:0010230,5.71e-21,20;UBERON:0003072,5.71e-21,20;UBERON:0004128,5.71e-21,20;UBERON:0003071,5.71e-21,20;UBERON:0000970,4.86e-20,21;UBERON:0002104,4.86e-20,21;UBERON:0001456,3.41e-19,22;UBERON:0000966,7.67e-18,6;UBERON:0005388,7.67e-18,6;UBERON:0001802,7.67e-18,6;UBERON:0000020,1.03e-17,24;UBERON:0001032,1.03e-17,24;UBERON:0004456,1.03e-17,24;UBERON:0005085,5.04e-14,31;UBERON:0000076,1.07e-13,8;UBERON:0007625,2.37e-10,11;UBERON:0001444,2.38e-09,49;UBERON:0001801,2.00e-08,14;UBERON:0000033,2.46e-08,56;UBERON:0000153,1.20e-07,62;UBERON:0007811,1.20e-07,62;UBERON:0003056,1.20e-07,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73895607462615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0.314408610199332,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27151 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23228 | |||
|TSSclassifier=S | |||
|UniProt=Q8IZJ3,F8W7D1,Q6NVW5 | |||
|association_with_transcript=-156bp_to_ENST00000291440,ENST00000388925,ENST00000443236,NM_015692,uc002nfb.2_5end | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_6_at_CPAMD8_5end | |||
|id=chr19:17137781..17137792,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000306;7.14e-26;4!CL:0002222;7.14e-26;4!CL:0002224;7.14e-26;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,7.14e-26,4;CL:0002222,7.14e-26,4;CL:0002224,7.14e-26,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.27e-34;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.59e-20!90;UBERON:0007023!1.84e-18!115;UBERON:0003075!1.29e-17!86;UBERON:0007284!1.29e-17!86;UBERON:0005743!4.30e-17!86;UBERON:0000073!6.54e-17!94;UBERON:0001016!6.54e-17!94;UBERON:0001017!4.70e-16!82;UBERON:0001049!2.99e-15!57;UBERON:0005068!2.99e-15!57;UBERON:0006241!2.99e-15!57;UBERON:0007135!2.99e-15!57;UBERON:0002298!4.00e-15!8;UBERON:0000924!1.43e-12!173;UBERON:0006601!1.43e-12!173;UBERON:0000153!2.53e-11!129;UBERON:0007811!2.53e-11!129;UBERON:0003076!3.20e-11!15;UBERON:0003057!3.20e-11!15;UBERON:0002616!1.10e-10!59;UBERON:0004121!1.12e-10!169;UBERON:0000341!1.39e-10!2;UBERON:0000955!4.38e-10!69;UBERON:0006238!4.38e-10!69;UBERON:0003056!8.21e-09!61;UBERON:0001896!1.04e-07!3;UBERON:0005290!1.04e-07!3;UBERON:0010096!1.04e-07!3;UBERON:0000974!1.17e-07!10;UBERON:0002780!1.29e-07!41;UBERON:0001890!1.29e-07!41;UBERON:0006240!1.29e-07!41;UBERON:0002240!1.44e-07!3;UBERON:0006331!1.64e-07!3;UBERON:0003080!2.09e-07!42;UBERON:0000033!2.28e-07!123;UBERON:0000988!3.65e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0010077;7.14e-26;4!UBERON:0005389;7.14e-26;4!UBERON:0000484;7.14e-26;4!UBERON:0000965;7.14e-26;4!UBERON:0001803;7.14e-26;4!UBERON:0000019;5.37e-22;19!UBERON:0000047;5.37e-22;19!UBERON:0004088;5.37e-22;19!UBERON:0010230;5.37e-22;19!UBERON:0000966;4.21e-21;5!UBERON:0005388;4.21e-21;5!UBERON:0001802;4.21e-21;5!UBERON:0000970;5.71e-21;20!UBERON:0002104;4.86e-20;21!UBERON:0001456;4.86e-20;21!UBERON:0000020;2.02e-18;23!UBERON:0001032;1.03e-17;24!UBERON:0004456;1.03e-17;24!UBERON:0007625;2.37e-10;11!UBERON:0001801;2.00e-08;14!UBERON:0001444;3.54e-08;48!UBERON:0000153;1.91e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,7.14e-26,4;UBERON:0005389,7.14e-26,4;UBERON:0000484,7.14e-26,4;UBERON:0002546,7.14e-26,4;UBERON:0000965,7.14e-26,4;UBERON:0001803,7.14e-26,4;UBERON:0003073,7.14e-26,4;UBERON:0005426,7.14e-26,4;UBERON:0000019,5.71e-21,20;UBERON:0000047,5.71e-21,20;UBERON:0010312,5.71e-21,20;UBERON:0004088,5.71e-21,20;UBERON:0010230,5.71e-21,20;UBERON:0003072,5.71e-21,20;UBERON:0004128,5.71e-21,20;UBERON:0003071,5.71e-21,20;UBERON:0000970,4.86e-20,21;UBERON:0002104,4.86e-20,21;UBERON:0001456,3.41e-19,22;UBERON:0000966,7.67e-18,6;UBERON:0005388,7.67e-18,6;UBERON:0001802,7.67e-18,6;UBERON:0000020,1.03e-17,24;UBERON:0001032,1.03e-17,24;UBERON:0004456,1.03e-17,24;UBERON:0005085,5.04e-14,31;UBERON:0000076,1.07e-13,8;UBERON:0007625,2.37e-10,11;UBERON:0001444,2.38e-09,49;UBERON:0001801,2.00e-08,14;UBERON:0000033,2.46e-08,56;UBERON:0000153,1.20e-07,62;UBERON:0007811,1.20e-07,62;UBERON:0003056,1.20e-07,61 | |||
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|short_description=p6@CPAMD8 | |||
}} |
Revision as of 19:16, 11 September 2013
Short description: | p6@CPAMD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_CPAMD8_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -156bp_to_ENST00000291440, ENST00000388925, ENST00000443236, NM_015692, uc002nfb.2_5end |
EntrezGene: | CPAMD8 |
HGNC: | 23228 |
UniProt: | Q8IZJ3F8W7D1Q6NVW5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 7.14e-26 | 4 |
vertebrate lens cell | 7.14e-26 | 4 |
lens epithelial cell | 7.14e-26 | 4 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 7.14e-26 | 4 |
transparent eye structure | 7.14e-26 | 4 |
simple cuboidal epithelium | 7.14e-26 | 4 |
cranial placode | 7.14e-26 | 4 |
lens of camera-type eye | 7.14e-26 | 4 |
epithelium of lens | 7.14e-26 | 4 |
lens placode | 7.14e-26 | 4 |
lens vesicle | 7.14e-26 | 4 |
camera-type eye | 5.71e-21 | 20 |
simple eye | 5.71e-21 | 20 |
immature eye | 5.71e-21 | 20 |
ocular region | 5.71e-21 | 20 |
eyeball of camera-type eye | 5.71e-21 | 20 |
optic cup | 5.71e-21 | 20 |
optic vesicle | 5.71e-21 | 20 |
eye primordium | 5.71e-21 | 20 |
eye | 4.86e-20 | 21 |
visual system | 4.86e-20 | 21 |
face | 3.41e-19 | 22 |
retina | 7.67e-18 | 6 |
photoreceptor array | 7.67e-18 | 6 |
posterior segment of eyeball | 7.67e-18 | 6 |
sense organ | 1.03e-17 | 24 |
sensory system | 1.03e-17 | 24 |
entire sense organ system | 1.03e-17 | 24 |
ectodermal placode | 5.04e-14 | 31 |
external ectoderm | 1.07e-13 | 8 |
pigment epithelium of eye | 2.37e-10 | 11 |
subdivision of head | 2.38e-09 | 49 |
anterior segment of eyeball | 2.00e-08 | 14 |
head | 2.46e-08 | 56 |
anterior region of body | 1.20e-07 | 62 |
craniocervical region | 1.20e-07 | 62 |
pre-chordal neural plate | 1.20e-07 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.