FFCP PHASE1:Hg19::chr18:7117741..7117752,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=284217|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6481|TSSclassifier=S|UniProt=P25391|association_with_transcript=60bp_to_ENST00000389658,NM_005559,uc002knm.2,uc010wzj.1_5end|coexpression_cluster_id=C3739|description=CAGE_peak_3_at_LAMA1_5end|id=chr18:7117741..7117752,-|ontology_enrichment_celltype=CL:0000333!5.68e-10!41;CL:0000133!1.29e-09!59;CL:0000055!2.03e-09!180;CL:0002319!4.96e-08!25;CL:0000221!2.91e-07!71;CL:0000148!5.12e-07!10;CL:0000541!5.12e-07!10|ontology_enrichment_celltype_v019=CL:0000708;8.77e-08;3!CL:0002322;1.11e-07;5!CL:0000148;1.24e-07;10!CL:0000147;6.46e-07;14!CL:0002590;7.62e-07;3|ontology_enrichment_celltype_v019_2=CL:0000708,6.27e-08,3;CL:0000148,8.86e-08,10;CL:0000541,8.86e-08,10;CL:0002322,9.53e-08,5;CL:0000133,2.25e-07,59;CL:0000333,5.12e-07,41;CL:0002590,5.35e-07,3;CL:0000147,6.33e-07,14|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.31e-25!94;UBERON:0001016!1.31e-25!94;UBERON:0001017!1.11e-24!82;UBERON:0005743!2.87e-24!86;UBERON:0004121!6.68e-20!169;UBERON:0000955!5.60e-19!69;UBERON:0006238!5.60e-19!69;UBERON:0000924!9.73e-19!173;UBERON:0006601!9.73e-19!173;UBERON:0000033!5.33e-17!123;UBERON:0002616!3.46e-16!59;UBERON:0000153!1.31e-15!129;UBERON:0007811!1.31e-15!129;UBERON:0003075!9.77e-15!86;UBERON:0007284!9.77e-15!86;UBERON:0001049!2.30e-14!57;UBERON:0005068!2.30e-14!57;UBERON:0006241!2.30e-14!57;UBERON:0007135!2.30e-14!57;UBERON:0002346!2.70e-13!90;UBERON:0003056!6.76e-12!61;UBERON:0002780!9.54e-12!41;UBERON:0001890!9.54e-12!41;UBERON:0006240!9.54e-12!41;UBERON:0003080!3.14e-11!42;UBERON:0002020!2.78e-10!34;UBERON:0003528!2.78e-10!34;UBERON:0000475!3.20e-10!365;UBERON:0001893!5.32e-10!34;UBERON:0002791!8.61e-10!33;UBERON:0000119!1.20e-09!312;UBERON:0001869!4.18e-09!32;UBERON:0000483!1.33e-08!309;UBERON:0000956!2.16e-07!25;UBERON:0000203!2.16e-07!25;UBERON:0000991!2.38e-07!21;UBERON:0009196!2.38e-07!21;UBERON:0009117!2.38e-07!21;UBERON:0005564!2.38e-07!21;UBERON:0004176!8.64e-07!22|ontology_enrichment_uberon_v019=UBERON:0005284;5.39e-11;5!UBERON:0006876;5.43e-09;11!UBERON:0003210;8.77e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.14e-13,89;UBERON:0001017,4.49e-13,81;UBERON:0005284,2.72e-11,5;UBERON:0000955,2.34e-10,68;UBERON:0006238,2.34e-10,68;UBERON:0004121,2.79e-10,171;UBERON:0000924,2.79e-10,171;UBERON:0006601,2.79e-10,171;UBERON:0006876,4.67e-09,11;UBERON:0003210,6.27e-08,3|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0.313454721478088,1.14494394852423,0.958120975510189,2.13422487311165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,1.15076305659177,0,0.50133791063589,0.144846518960824,0,0,0,0,0.087834785693126,1.30979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0.132409180813219,0,0,0,0,0,0.933633106199299,0.134710672069688,0.817309515567294,2.72443369760877,2.88087962239999,0.468642863667593,0.624320153660641,0.570471821544449,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0.741800787835671,0,0,0.336672227908132,0.250237039743928,0,0,0,1.50238058906597,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0.169560592310488,0,0.818238361772504,0.286804595389004,0.731842236777572,2.25300606146525,1.85910308591229,2.17688215532278,2.01856680700503,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,1.02940686179115,0.219500570817251,0,0,0,0,0,0,0.695582429850461,3.17003474436719,0.144366447761074,0,0,0,0,0,0,0,0,0.503946384596579,0,0.53735113621709,0,1.53353071666084,0,0,0,0,0,0.253991577168676,1.52795370223311,0,1.71072446022705,0.925447434329912,6.30720421472227,0.857479297891735,2.01835951821649,10.0270815831654,1.98013371716565,2.19761916788222,0,0.845302752556,2.39344304926383,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0.579125226670317,0.205476322550383,0.895304816199478,0,0,0,0,1.77866236955724,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0.496215615637554,0.153461973288062,0,0.384417447767103,0,0.160853921143607,0,0,0.355123450626254,0.0821271560138091,1.55776328755086,0.116210378459959,0,0.200506470303285,0.0920809889358963,0,0.182091168006717,1.04899531967539,0,0.847168708148562,1.56869953835371,0,0.844413031143006,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0.656029291399411,0,0,0,0,0,0,0,0.096670718292122,0.924291702687866,0.307007349452259,0,0.322260734604821,0.725083469571143,1.10794615640931,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,1.48863347743867,1.581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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=284217 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6481 | |||
|TSSclassifier=S | |||
|UniProt=P25391 | |||
|association_with_transcript=60bp_to_ENST00000389658,NM_005559,uc002knm.2,uc010wzj.1_5end | |||
|coexpression_cluster_id=C3739 | |||
|description=CAGE_peak_3_at_LAMA1_5end | |||
|id=chr18:7117741..7117752,- | |||
|ontology_enrichment_celltype=CL:0000333!5.68e-10!41;CL:0000133!1.29e-09!59;CL:0000055!2.03e-09!180;CL:0002319!4.96e-08!25;CL:0000221!2.91e-07!71;CL:0000148!5.12e-07!10;CL:0000541!5.12e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000708;8.77e-08;3!CL:0002322;1.11e-07;5!CL:0000148;1.24e-07;10!CL:0000147;6.46e-07;14!CL:0002590;7.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,6.27e-08,3;CL:0000148,8.86e-08,10;CL:0000541,8.86e-08,10;CL:0002322,9.53e-08,5;CL:0000133,2.25e-07,59;CL:0000333,5.12e-07,41;CL:0002590,5.35e-07,3;CL:0000147,6.33e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.31e-25!94;UBERON:0001016!1.31e-25!94;UBERON:0001017!1.11e-24!82;UBERON:0005743!2.87e-24!86;UBERON:0004121!6.68e-20!169;UBERON:0000955!5.60e-19!69;UBERON:0006238!5.60e-19!69;UBERON:0000924!9.73e-19!173;UBERON:0006601!9.73e-19!173;UBERON:0000033!5.33e-17!123;UBERON:0002616!3.46e-16!59;UBERON:0000153!1.31e-15!129;UBERON:0007811!1.31e-15!129;UBERON:0003075!9.77e-15!86;UBERON:0007284!9.77e-15!86;UBERON:0001049!2.30e-14!57;UBERON:0005068!2.30e-14!57;UBERON:0006241!2.30e-14!57;UBERON:0007135!2.30e-14!57;UBERON:0002346!2.70e-13!90;UBERON:0003056!6.76e-12!61;UBERON:0002780!9.54e-12!41;UBERON:0001890!9.54e-12!41;UBERON:0006240!9.54e-12!41;UBERON:0003080!3.14e-11!42;UBERON:0002020!2.78e-10!34;UBERON:0003528!2.78e-10!34;UBERON:0000475!3.20e-10!365;UBERON:0001893!5.32e-10!34;UBERON:0002791!8.61e-10!33;UBERON:0000119!1.20e-09!312;UBERON:0001869!4.18e-09!32;UBERON:0000483!1.33e-08!309;UBERON:0000956!2.16e-07!25;UBERON:0000203!2.16e-07!25;UBERON:0000991!2.38e-07!21;UBERON:0009196!2.38e-07!21;UBERON:0009117!2.38e-07!21;UBERON:0005564!2.38e-07!21;UBERON:0004176!8.64e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0005284;5.39e-11;5!UBERON:0006876;5.43e-09;11!UBERON:0003210;8.77e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.14e-13,89;UBERON:0001017,4.49e-13,81;UBERON:0005284,2.72e-11,5;UBERON:0000955,2.34e-10,68;UBERON:0006238,2.34e-10,68;UBERON:0004121,2.79e-10,171;UBERON:0000924,2.79e-10,171;UBERON:0006601,2.79e-10,171;UBERON:0006876,4.67e-09,11;UBERON:0003210,6.27e-08,3 | |||
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| |||
|short_description=p3@LAMA1 | |||
}} |
Revision as of 18:08, 11 September 2013
Short description: | p3@LAMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LAMA1_5end |
Coexpression cluster: | C3739_choriocarcinoma_large_melanoma_pancreatic_mesenchymal_Meningeal_Melanocyte |
Association with transcript: | 60bp_to_ENST00000389658, NM_005559, uc002knm.2, uc010wzj.1_5end |
EntrezGene: | LAMA1 |
HGNC: | 6481 |
UniProt: | P25391 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 6.27e-08 | 3 |
melanocyte | 8.86e-08 | 10 |
melanoblast | 8.86e-08 | 10 |
embryonic stem cell | 9.53e-08 | 5 |
neurectodermal cell | 2.25e-07 | 59 |
migratory neural crest cell | 5.12e-07 | 41 |
smooth muscle cell of the brain vasculature | 5.35e-07 | 3 |
pigment cell | 6.33e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.14e-13 | 89 |
central nervous system | 4.49e-13 | 81 |
brain vasculature | 2.72e-11 | 5 |
brain | 2.34e-10 | 68 |
future brain | 2.34e-10 | 68 |
ectoderm-derived structure | 2.79e-10 | 171 |
ectoderm | 2.79e-10 | 171 |
presumptive ectoderm | 2.79e-10 | 171 |
vasculature of organ | 4.67e-09 | 11 |
blood-cerebrospinal fluid barrier | 6.27e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.