FFCP PHASE1:Hg19::chr18:61254400..61254410,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5275|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8944|TSSclassifier=S|UniProt=Q9UIV8|association_with_transcript=-123bp_to_ENST00000269489,NM_012397,uc002ljc.2,uc002ljd.2,uc010xep.1,uc010xeq.1,uc010xer.1_5end|coexpression_cluster_id=C820|description=CAGE_peak_8_at_SERPINB13_5end|id=chr18:61254400..61254410,+|ontology_enrichment_celltype=CL:0002076!2.00e-12!43;CL:0002251!3.12e-12!21;CL:0000223!7.76e-11!59;CL:0002336!2.22e-08!1;CL:0002261!2.22e-08!1;CL:0002170!2.22e-08!1|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1749!8.02e-19!14;DOID:3151!3.31e-09!1;DOID:3149!3.31e-09!1;DOID:4362!5.40e-07!5|ontology_enrichment_disease_v019=DOID:3151;3.34e-66;1!DOID:3149;3.34e-66;1!DOID:3451;5.96e-34;2!DOID:4159;5.96e-34;2!DOID:0060122;5.96e-34;2!DOID:4362;1.40e-14;5|ontology_enrichment_disease_v019_2=DOID:3151,2.39e-66,1;DOID:3149,2.39e-66,1;DOID:3451,5.04e-34,2;DOID:4159,5.04e-34,2;DOID:0060122,5.04e-34,2;DOID:4362,1.40e-14,5|ontology_enrichment_uberon=UBERON:0003729!7.65e-24!5;UBERON:0000974!1.45e-18!10;UBERON:0003343!1.74e-17!4;UBERON:0004785!1.74e-17!4;UBERON:0000341!6.78e-16!2;UBERON:0000344!3.77e-15!12;UBERON:0000166!3.67e-12!21;UBERON:0000165!5.06e-12!28;UBERON:0000930!5.06e-12!28;UBERON:0000002!9.17e-12!6;UBERON:0001560!9.17e-12!6;UBERON:0001004!2.32e-10!72;UBERON:0000997!3.58e-09!1;UBERON:0005056!3.58e-09!1;UBERON:0001444!1.07e-08!48;UBERON:0002372!1.78e-08!1;UBERON:0001961!1.78e-08!1;UBERON:0001744!1.78e-08!1;UBERON:0001735!1.78e-08!1;UBERON:0000161!4.26e-07!35;UBERON:0004119!6.42e-07!169;UBERON:0000925!6.42e-07!169;UBERON:0006595!6.42e-07!169|ontology_enrichment_uberon_v019=UBERON:0000997;3.34e-66;1!UBERON:0005056;3.34e-66;1!UBERON:0004176;3.34e-66;1!UBERON:0000014;9.45e-18;4!UBERON:0000002;2.19e-12;6!UBERON:0001560;2.19e-12;6!UBERON:0003134;2.74e-09;33!UBERON:0000474;1.23e-08;37!UBERON:0003100;5.50e-08;41|ontology_enrichment_uberon_v019_2=UBERON:0000997,4.66e-66,1;UBERON:0005056,4.66e-66,1;UBERON:0000014,8.69e-18,4;UBERON:0000002,2.19e-12,6;UBERON:0001560,2.19e-12,6;UBERON:0003134,2.92e-08,37;UBERON:0000474,2.92e-08,37;UBERON:0003100,1.47e-07,41|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20674611840788,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37189356380129,0.261177619741208,0,0,0,0,0,0.969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67717343799633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785181748008205,0.353909170043221,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879356221798103,0.511049710558381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0.23806443146374,0,0,0,0,0,0.217716747896961,0,0.134704106029175,0.502055437748735,0,0,0,0,0,0,0,0,0,0,0|short_description=p8@SERPINB13}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5275 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8944 | |||
|TSSclassifier=S | |||
|UniProt=Q9UIV8 | |||
|association_with_transcript=-123bp_to_ENST00000269489,NM_012397,uc002ljc.2,uc002ljd.2,uc010xep.1,uc010xeq.1,uc010xer.1_5end | |||
|coexpression_cluster_id=C820 | |||
|description=CAGE_peak_8_at_SERPINB13_5end | |||
|id=chr18:61254400..61254410,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.00e-12!43;CL:0002251!3.12e-12!21;CL:0000223!7.76e-11!59;CL:0002336!2.22e-08!1;CL:0002261!2.22e-08!1;CL:0002170!2.22e-08!1 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!8.02e-19!14;DOID:3151!3.31e-09!1;DOID:3149!3.31e-09!1;DOID:4362!5.40e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:3151;3.34e-66;1!DOID:3149;3.34e-66;1!DOID:3451;5.96e-34;2!DOID:4159;5.96e-34;2!DOID:0060122;5.96e-34;2!DOID:4362;1.40e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,2.39e-66,1;DOID:3149,2.39e-66,1;DOID:3451,5.04e-34,2;DOID:4159,5.04e-34,2;DOID:0060122,5.04e-34,2;DOID:4362,1.40e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0003729!7.65e-24!5;UBERON:0000974!1.45e-18!10;UBERON:0003343!1.74e-17!4;UBERON:0004785!1.74e-17!4;UBERON:0000341!6.78e-16!2;UBERON:0000344!3.77e-15!12;UBERON:0000166!3.67e-12!21;UBERON:0000165!5.06e-12!28;UBERON:0000930!5.06e-12!28;UBERON:0000002!9.17e-12!6;UBERON:0001560!9.17e-12!6;UBERON:0001004!2.32e-10!72;UBERON:0000997!3.58e-09!1;UBERON:0005056!3.58e-09!1;UBERON:0001444!1.07e-08!48;UBERON:0002372!1.78e-08!1;UBERON:0001961!1.78e-08!1;UBERON:0001744!1.78e-08!1;UBERON:0001735!1.78e-08!1;UBERON:0000161!4.26e-07!35;UBERON:0004119!6.42e-07!169;UBERON:0000925!6.42e-07!169;UBERON:0006595!6.42e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000997;3.34e-66;1!UBERON:0005056;3.34e-66;1!UBERON:0004176;3.34e-66;1!UBERON:0000014;9.45e-18;4!UBERON:0000002;2.19e-12;6!UBERON:0001560;2.19e-12;6!UBERON:0003134;2.74e-09;33!UBERON:0000474;1.23e-08;37!UBERON:0003100;5.50e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000997,4.66e-66,1;UBERON:0005056,4.66e-66,1;UBERON:0000014,8.69e-18,4;UBERON:0000002,2.19e-12,6;UBERON:0001560,2.19e-12,6;UBERON:0003134,2.92e-08,37;UBERON:0000474,2.92e-08,37;UBERON:0003100,1.47e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20674611840788,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37189356380129,0.261177619741208,0,0,0,0,0,0.969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67717343799633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785181748008205,0.353909170043221,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879356221798103,0.511049710558381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0.23806443146374,0,0,0,0,0,0.217716747896961,0,0.134704106029175,0.502055437748735,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@SERPINB13 | |||
}} |
Revision as of 18:01, 11 September 2013
Short description: | p8@SERPINB13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SERPINB13_5end |
Coexpression cluster: | C820_cervical_tongue_esophagus_throat_tonsil_oral_uterus |
Association with transcript: | -123bp_to_ENST00000269489, NM_012397, uc002ljc.2, uc002ljd.2, uc010xep.1, uc010xeq.1, uc010xer.1_5end |
EntrezGene: | SERPINB13 |
HGNC: | 8944 |
UniProt: | Q9UIV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammalian vulva | 4.66e-66 | 1 |
external female genitalia | 4.66e-66 | 1 |
zone of skin | 8.69e-18 | 4 |
uterine cervix | 2.19e-12 | 6 |
neck of organ | 2.19e-12 | 6 |
female reproductive organ | 2.92e-08 | 37 |
female reproductive system | 2.92e-08 | 37 |
female organism | 1.47e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 2.39e-66 | 1 |
keratoacanthoma | 2.39e-66 | 1 |
skin carcinoma | 5.04e-34 | 2 |
skin cancer | 5.04e-34 | 2 |
integumentary system cancer | 5.04e-34 | 2 |
cervical cancer | 1.40e-14 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.